Wall clock time and date at job start Mon Mar 8 2021 11:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00091 * 2 1 4 4 H 1.09006 * 109.46822 * 238.90247 * 3 2 1 5 5 C 1.52994 * 109.47260 * 358.90031 * 3 2 1 6 6 C 1.53000 * 109.47224 * 60.00168 * 5 3 2 7 7 C 1.52998 * 109.47299 * 59.99846 * 6 5 3 8 8 H 1.08996 * 109.47283 * 60.00231 * 7 6 5 9 9 O 1.42897 * 109.47621 * 180.02562 * 7 6 5 10 10 C 1.53008 * 109.47053 * 300.00305 * 7 6 5 11 11 C 1.52999 * 109.47029 * 59.99959 * 10 7 6 12 12 S 1.65598 * 119.99687 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40247 * 203.54066 * 12 2 1 14 14 O 1.42106 * 106.40252 * 336.45646 * 12 2 1 15 15 C 1.76200 * 107.22148 * 90.00006 * 12 2 1 16 16 C 1.38239 * 119.99698 * 269.72728 * 15 12 2 17 17 C 1.38236 * 119.99829 * 179.76487 * 16 15 12 18 18 C 1.38236 * 119.99788 * 0.48182 * 17 16 15 19 19 C 1.50700 * 120.00115 * 179.76477 * 18 17 16 20 20 O 1.42903 * 109.46638 * 120.02501 * 19 18 17 21 21 Si 1.86296 * 109.47008 * 0.02926 * 19 18 17 22 22 C 1.38234 * 120.00172 * 359.79417 * 18 17 16 23 23 C 1.38234 * 120.00079 * 359.95322 * 22 18 17 24 24 H 1.08998 * 109.47096 * 264.41699 * 1 2 3 25 25 H 1.09006 * 109.47176 * 24.41368 * 1 2 3 26 26 H 1.09003 * 109.47115 * 144.40912 * 1 2 3 27 27 H 1.09004 * 109.47308 * 179.97438 * 5 3 2 28 28 H 1.09003 * 109.47644 * 299.99950 * 5 3 2 29 29 H 1.09002 * 109.47459 * 180.02562 * 6 5 3 30 30 H 1.09005 * 109.46984 * 300.00299 * 6 5 3 31 31 H 0.96696 * 114.00643 * 179.97438 * 9 7 6 32 32 H 1.09000 * 109.46873 * 180.02562 * 10 7 6 33 33 H 1.08996 * 109.47016 * 300.00090 * 10 7 6 34 34 H 1.08996 * 109.46931 * 180.02562 * 11 10 7 35 35 H 1.08997 * 109.47525 * 59.99846 * 11 10 7 36 36 H 1.08002 * 120.00106 * 359.97438 * 16 15 12 37 37 H 1.07994 * 120.00471 * 180.25372 * 17 16 15 38 38 H 1.08990 * 109.47765 * 240.02422 * 19 18 17 39 39 H 0.96703 * 114.00290 * 299.99688 * 20 19 18 40 40 H 1.48504 * 110.00263 * 58.67422 * 21 19 18 41 41 H 1.48498 * 110.00053 * 179.97438 * 21 19 18 42 42 H 1.08005 * 120.00508 * 179.97438 * 22 18 17 43 43 H 1.08003 * 120.00643 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 2.8389 1.3179 -0.8800 5 6 1.2036 2.4315 -0.0277 6 6 0.3034 2.3624 1.2075 7 6 1.1621 2.4555 2.4703 8 1 1.7071 3.3994 2.4704 9 8 0.3214 2.3904 3.6240 10 6 2.1561 1.2926 2.4980 11 6 3.0563 1.3618 1.2628 12 16 2.2929 -1.4342 -0.0006 13 8 3.5759 -1.1571 0.5439 14 8 1.4112 -2.4068 0.5435 15 6 2.5537 -1.8852 -1.6838 16 6 1.6219 -2.6654 -2.3427 17 6 1.8241 -3.0152 -3.6646 18 6 2.9630 -2.5932 -4.3248 19 6 3.1861 -2.9789 -5.7644 20 8 3.2828 -1.7986 -6.5642 21 14 1.7568 -4.0159 -6.3581 22 6 3.8975 -1.8178 -3.6643 23 6 3.6928 -1.4636 -2.3439 24 1 -0.3633 -0.1000 1.0228 25 1 -0.3634 0.9358 -0.4248 26 1 -0.3633 -0.8357 -0.5981 27 1 1.7486 3.3755 -0.0272 28 1 0.5918 2.3653 -0.9274 29 1 -0.4051 3.1906 1.1876 30 1 -0.2417 1.4184 1.2075 31 1 0.7996 2.4433 4.4628 32 1 2.7675 1.3587 3.3979 33 1 1.6111 0.3487 2.4980 34 1 3.7641 0.5331 1.2823 35 1 3.6014 2.3057 1.2628 36 1 0.7343 -2.9988 -1.8255 37 1 1.0943 -3.6213 -4.1806 38 1 4.1098 -3.5513 -5.8483 39 1 2.4941 -1.2397 -6.5375 40 1 0.4872 -3.2582 -6.2190 41 1 1.9644 -4.4024 -7.7768 42 1 4.7875 -1.4884 -4.1799 43 1 4.4227 -0.8574 -1.8279 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15557740_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:19 Heat of formation + Delta-G solvation = -98.059617 kcal Electronic energy + Delta-G solvation = -27614.475847 eV Core-core repulsion = 23754.281476 eV Total energy + Delta-G solvation = -3860.194371 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.122 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.84029 -40.71578 -38.51949 -37.86449 -37.54041 -37.04897 -34.26736 -33.05720 -32.23602 -32.20886 -30.22199 -27.29168 -26.80460 -24.10937 -23.76122 -23.05667 -22.83035 -21.29405 -20.09029 -19.12700 -18.51572 -18.34331 -18.04920 -17.32594 -17.04501 -16.52899 -16.38745 -16.10409 -15.90042 -15.65484 -15.45888 -15.10957 -14.82586 -14.63039 -14.54327 -14.29601 -14.04457 -13.90635 -13.79437 -13.45176 -13.27163 -13.06811 -12.97103 -12.76013 -12.68530 -12.65772 -12.55485 -12.08031 -11.90207 -11.83630 -11.77577 -11.46271 -11.07072 -10.80863 -10.51727 -10.41828 -10.16795 -10.00192 -4.96540 -0.80878 -0.40020 0.16478 1.21095 1.54418 1.78542 1.90793 2.32486 2.63468 3.09157 3.29068 3.29508 3.45751 3.55207 3.71003 3.74570 3.80244 3.94622 4.04909 4.16879 4.17580 4.26825 4.29461 4.39038 4.41911 4.48050 4.52036 4.55856 4.59928 4.66262 4.80384 4.81275 4.87320 4.92897 4.95488 4.96759 5.12375 5.17201 5.19108 5.21751 5.23454 5.33292 5.52184 5.64567 5.67825 6.39249 6.85569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.987 5.987 3 C 0.150 3.850 4 H 0.096 0.904 5 C -0.111 4.111 6 C -0.149 4.149 7 C 0.104 3.896 8 H 0.062 0.938 9 O -0.590 6.590 10 C -0.148 4.148 11 C -0.170 4.170 12 S 2.697 3.303 13 O -0.970 6.970 14 O -0.984 6.984 15 C -0.679 4.679 16 C -0.026 4.026 17 C -0.139 4.139 18 C -0.062 4.062 19 C -0.089 4.089 20 O -0.543 6.543 21 Si 0.762 3.238 22 C -0.120 4.120 23 C -0.027 4.027 24 H 0.060 0.940 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.391 0.609 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.388 0.612 40 H -0.276 1.276 41 H -0.301 1.301 42 H 0.145 0.855 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 2.299 -2.849 3.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.827 5.827 3 C 0.045 3.955 4 H 0.114 0.886 5 C -0.149 4.149 6 C -0.186 4.186 7 C 0.045 3.955 8 H 0.080 0.920 9 O -0.398 6.398 10 C -0.186 4.186 11 C -0.208 4.208 12 S 2.790 3.210 13 O -0.960 6.960 14 O -0.974 6.974 15 C -0.767 4.767 16 C -0.045 4.045 17 C -0.157 4.157 18 C -0.063 4.063 19 C -0.198 4.198 20 O -0.351 6.351 21 Si 0.667 3.333 22 C -0.139 4.139 23 C -0.046 4.046 24 H 0.078 0.922 25 H 0.129 0.871 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.240 0.760 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.172 0.828 37 H 0.174 0.826 38 H 0.151 0.849 39 H 0.238 0.762 40 H -0.202 1.202 41 H -0.229 1.229 42 H 0.163 0.837 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.251 1.477 -3.253 3.785 hybrid contribution 0.449 1.150 -0.285 1.267 sum -0.802 2.628 -3.538 4.480 Atomic orbital electron populations 1.22126 0.77568 1.05221 1.02309 1.57295 1.15614 1.20278 1.89487 1.21146 0.93310 0.82659 0.98411 0.88603 1.21733 0.97401 0.97605 0.98177 1.22251 0.98732 1.05101 0.92481 1.21901 0.90711 0.96683 0.86173 0.91972 1.86466 1.38934 1.97035 1.17372 1.22180 0.98083 0.99197 0.99161 1.22582 0.98870 1.05756 0.93637 1.01712 0.72765 0.72349 0.74135 1.93473 1.41659 1.84091 1.76818 1.93554 1.66729 1.59896 1.77244 1.30945 1.05001 1.14510 1.26236 1.21137 0.97267 0.91736 0.94377 1.21388 0.97964 1.01275 0.95084 1.20790 0.93907 0.95036 0.96584 1.25357 1.13893 0.92992 0.87522 1.86602 1.44283 1.35312 1.68884 0.93979 0.73690 0.85269 0.80397 1.21347 1.00116 0.98272 0.94169 1.21160 0.94128 0.94800 0.94507 0.92171 0.87125 0.90611 0.88733 0.88689 0.91156 0.88629 0.76017 0.91382 0.93371 0.88282 0.88835 0.82829 0.82590 0.84949 0.76229 1.20175 1.22865 0.83700 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.28 8.08 127.77 1.03 0.75 16 2 N -0.99 1.47 2.52 -516.51 -1.30 0.17 16 3 C 0.15 -0.58 3.15 44.99 0.14 -0.43 16 4 H 0.10 -0.68 8.14 -2.38 -0.02 -0.69 16 5 C -0.11 0.75 4.91 30.59 0.15 0.90 16 6 C -0.15 0.38 4.88 30.59 0.15 0.53 16 7 C 0.10 -0.03 3.47 30.60 0.11 0.08 16 8 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 9 O -0.59 -1.64 13.32 -148.98 -1.98 -3.63 16 10 C -0.15 -0.16 5.39 30.60 0.16 0.01 16 11 C -0.17 0.13 5.22 30.59 0.16 0.29 16 12 S 2.70 10.34 5.59 -56.49 -0.32 10.03 16 13 O -0.97 -7.47 13.54 -128.00 -1.73 -9.21 16 14 O -0.98 -9.62 16.46 -128.00 -2.11 -11.73 16 15 C -0.68 -0.78 5.97 22.27 0.13 -0.65 16 16 C -0.03 0.02 9.52 22.27 0.21 0.23 16 17 C -0.14 0.39 8.67 22.27 0.19 0.59 16 18 C -0.06 0.14 5.39 -19.87 -0.11 0.03 16 19 C -0.09 0.30 2.82 71.24 0.20 0.51 16 20 O -0.54 0.40 12.77 -148.98 -1.90 -1.50 16 21 Si 0.76 -3.30 29.79 68.60 2.04 -1.26 16 22 C -0.12 0.14 9.61 22.27 0.21 0.35 16 23 C -0.03 0.00 9.52 22.27 0.21 0.22 16 24 H 0.06 -0.09 6.77 -2.39 -0.02 -0.11 16 25 H 0.11 -0.91 4.86 -2.38 -0.01 -0.92 16 26 H 0.08 -0.44 7.99 -2.39 -0.02 -0.45 16 27 H 0.09 -0.82 8.14 -2.38 -0.02 -0.84 16 28 H 0.09 -0.90 6.98 -2.39 -0.02 -0.92 16 29 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.10 -0.18 3.55 -2.38 -0.01 -0.18 16 31 H 0.39 -1.61 9.08 -74.06 -0.67 -2.28 16 32 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.05 0.23 7.60 -2.39 -0.02 0.21 16 34 H 0.10 0.35 4.96 -2.39 -0.01 0.34 16 35 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 36 H 0.15 -0.49 7.61 -2.91 -0.02 -0.51 16 37 H 0.16 -1.17 4.88 -2.91 -0.01 -1.18 16 38 H 0.13 -0.66 7.96 -2.39 -0.02 -0.68 16 39 H 0.39 -2.53 8.70 -74.06 -0.64 -3.17 16 40 H -0.28 0.35 7.11 99.48 0.71 1.05 16 41 H -0.30 -1.13 7.11 99.48 0.71 -0.42 16 42 H 0.15 -0.46 8.06 -2.91 -0.02 -0.48 16 43 H 0.15 -0.39 7.62 -2.91 -0.02 -0.41 16 Total: 0.00 -21.58 340.29 -4.56 -26.14 By element: Atomic # 1 Polarization: -12.18 SS G_CDS: -0.22 Total: -12.40 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 2.96 Total: 3.38 kcal Atomic # 7 Polarization: 1.47 SS G_CDS: -1.30 Total: 0.17 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -7.73 Total: -26.06 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: 2.04 Total: -1.26 kcal Atomic # 16 Polarization: 10.34 SS G_CDS: -0.32 Total: 10.03 kcal Total: -21.58 -4.56 -26.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.923 kcal (2) G-P(sol) polarization free energy of solvation -21.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds