Wall clock time and date at job start Mon Mar 8 2021 11:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00133 * 2 1 4 4 H 1.09005 * 109.47392 * 239.24933 * 3 2 1 5 5 C 1.53007 * 109.47118 * 359.24634 * 3 2 1 6 6 C 1.53008 * 109.46503 * 60.00124 * 5 3 2 7 7 C 1.53000 * 109.47288 * 60.00024 * 6 5 3 8 8 H 1.09003 * 109.46945 * 59.99532 * 7 6 5 9 9 O 1.42897 * 109.47072 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47057 * 299.99725 * 7 6 5 11 11 C 1.53000 * 109.47162 * 119.24909 * 3 2 1 12 12 S 1.65602 * 119.99893 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40289 * 340.86247 * 12 2 1 14 14 O 1.42103 * 106.39839 * 207.94404 * 12 2 1 15 15 C 1.76199 * 107.21938 * 94.40768 * 12 2 1 16 16 C 1.33386 * 125.20419 * 96.55546 * 15 12 2 17 17 C 1.50694 * 122.53968 * 0.02562 * 16 15 12 18 18 O 1.42901 * 109.47057 * 284.40848 * 17 16 15 19 19 Si 1.86306 * 109.47395 * 164.40860 * 17 16 15 20 20 C 1.38427 * 114.91937 * 179.75531 * 16 15 12 21 21 C 1.33391 * 114.92330 * 0.24158 * 20 16 15 22 22 S 1.75891 * 125.19960 * 276.69078 * 15 12 2 23 23 H 1.09005 * 109.46602 * 264.30229 * 1 2 3 24 24 H 1.08996 * 109.46917 * 24.30023 * 1 2 3 25 25 H 1.08994 * 109.47141 * 144.30188 * 1 2 3 26 26 H 1.08994 * 109.47084 * 179.97438 * 5 3 2 27 27 H 1.08993 * 109.47375 * 300.00384 * 5 3 2 28 28 H 1.09003 * 109.46263 * 179.97438 * 6 5 3 29 29 H 1.08994 * 109.46857 * 299.99412 * 6 5 3 30 30 H 0.96697 * 114.00200 * 179.97438 * 9 7 6 31 31 H 1.09003 * 109.47092 * 179.97438 * 10 7 6 32 32 H 1.09000 * 109.47488 * 300.00036 * 10 7 6 33 33 H 1.08992 * 109.47028 * 59.99967 * 11 3 2 34 34 H 1.09000 * 109.47001 * 180.02562 * 11 3 2 35 35 H 1.08999 * 109.47231 * 44.40694 * 17 16 15 36 36 H 0.96698 * 114.00117 * 180.02562 * 18 17 16 37 37 H 1.48503 * 109.99702 * 298.68010 * 19 17 16 38 38 H 1.48499 * 109.99908 * 59.99656 * 19 17 16 39 39 H 1.08002 * 122.53971 * 180.27357 * 20 16 15 40 40 H 1.07996 * 125.20330 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 2.8343 1.3207 -0.8832 5 6 1.2034 2.4316 -0.0190 6 6 0.3097 2.3587 1.2208 7 6 1.1750 2.4479 2.4794 8 1 1.7201 3.3919 2.4793 9 8 0.3403 2.3804 3.6372 10 6 2.1691 1.2851 2.4983 11 6 3.0629 1.3579 1.2586 12 16 2.2930 -1.4342 -0.0006 13 8 1.3784 -2.4258 0.4458 14 8 3.5366 -1.1798 0.6383 15 6 2.6658 -1.8205 -1.6789 16 6 3.8205 -1.5537 -2.2911 17 6 4.9692 -0.8720 -1.5936 18 8 4.6864 0.5226 -1.4618 19 14 6.5251 -1.0983 -2.5930 20 6 3.8856 -1.9558 -3.6141 21 6 2.7821 -2.5446 -4.0776 22 16 1.5711 -2.6139 -2.8039 23 1 -0.3633 -0.1020 1.0227 24 1 -0.3633 0.9366 -0.4229 25 1 -0.3633 -0.8345 -0.5996 26 1 1.7484 3.3755 -0.0185 27 1 0.5869 2.3680 -0.9155 28 1 -0.3983 3.1874 1.2075 29 1 -0.2353 1.4147 1.2207 30 1 0.8229 2.4308 4.4736 31 1 2.7860 1.3489 3.3947 32 1 1.6242 0.3411 2.4983 33 1 3.7711 0.5295 1.2720 34 1 3.6076 2.3021 1.2588 35 1 5.1055 -1.3101 -0.6049 36 1 5.3847 1.0256 -1.0210 37 1 6.8476 -2.5431 -2.7104 38 1 6.3521 -0.5051 -3.9434 39 1 4.7636 -1.8048 -4.2246 40 1 2.6519 -2.9207 -5.0816 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15557740_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:24 Heat of formation + Delta-G solvation = -79.777774 kcal Electronic energy + Delta-G solvation = -27357.501532 eV Core-core repulsion = 23587.252167 eV Total energy + Delta-G solvation = -3770.249365 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.81848 -40.01935 -38.22491 -37.49451 -37.13421 -36.83141 -34.21680 -32.21429 -31.52021 -30.18232 -28.02078 -26.82259 -24.20748 -23.72472 -22.85723 -21.59324 -20.96305 -19.73886 -19.04476 -18.54189 -18.35857 -17.95673 -17.35505 -17.18357 -16.54203 -16.16119 -15.75317 -15.59139 -15.47675 -14.96933 -14.70697 -14.55555 -14.39281 -14.32439 -14.17087 -13.97366 -13.74545 -13.41466 -13.08336 -12.97672 -12.90773 -12.77237 -12.64522 -12.57557 -12.49303 -12.24880 -11.96617 -11.77359 -11.70904 -11.46448 -11.05297 -10.49781 -10.46026 -10.27536 -9.94669 -9.69009 -5.06727 -0.82614 -0.53130 0.27049 0.59297 1.12676 1.19970 1.58025 1.87379 1.93828 2.67927 3.16766 3.23239 3.44439 3.56720 3.73257 3.77247 3.87820 3.98040 4.00904 4.13764 4.23567 4.29748 4.37860 4.43170 4.44759 4.51913 4.57541 4.61802 4.64081 4.76933 4.84589 4.89313 4.93343 4.99560 5.11433 5.20599 5.25983 5.28416 5.33691 5.63268 5.66905 6.50957 6.77476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.985 5.985 3 C 0.148 3.852 4 H 0.105 0.895 5 C -0.118 4.118 6 C -0.145 4.145 7 C 0.106 3.894 8 H 0.052 0.948 9 O -0.570 6.570 10 C -0.148 4.148 11 C -0.161 4.161 12 S 2.717 3.283 13 O -0.952 6.952 14 O -0.936 6.936 15 C -0.777 4.777 16 C 0.053 3.947 17 C -0.091 4.091 18 O -0.540 6.540 19 Si 0.693 3.307 20 C -0.169 4.169 21 C -0.164 4.164 22 S 0.227 5.773 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.378 0.622 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.388 0.612 37 H -0.254 1.254 38 H -0.250 1.250 39 H 0.148 0.852 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 3.545 -2.230 5.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.825 5.825 3 C 0.044 3.956 4 H 0.122 0.878 5 C -0.156 4.156 6 C -0.182 4.182 7 C 0.047 3.953 8 H 0.070 0.930 9 O -0.376 6.376 10 C -0.186 4.186 11 C -0.200 4.200 12 S 2.804 3.196 13 O -0.942 6.942 14 O -0.926 6.926 15 C -0.977 4.977 16 C 0.035 3.965 17 C -0.204 4.204 18 O -0.347 6.347 19 Si 0.594 3.406 20 C -0.199 4.199 21 C -0.302 4.302 22 S 0.494 5.506 23 H 0.088 0.912 24 H 0.110 0.890 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.225 0.775 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.237 0.763 37 H -0.178 1.178 38 H -0.175 1.175 39 H 0.165 0.835 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.016 1.872 -2.964 3.650 hybrid contribution 1.319 0.461 -0.505 1.486 sum 2.335 2.334 -3.469 4.789 Atomic orbital electron populations 1.21960 0.78544 1.03714 1.02385 1.57364 1.14905 1.21117 1.89087 1.21223 0.92816 0.81845 0.99737 0.87778 1.21745 0.97811 0.98025 0.98051 1.22189 0.98552 1.05112 0.92321 1.21813 0.90821 0.96706 0.85955 0.92956 1.86503 1.37863 1.97014 1.16225 1.22194 0.98008 0.99592 0.98838 1.22542 0.98990 1.05458 0.92970 1.01477 0.73432 0.72233 0.72432 1.93610 1.64250 1.57548 1.78830 1.93419 1.43517 1.84056 1.71610 1.35889 1.07304 1.23375 1.31175 1.18079 0.92371 0.93503 0.92500 1.24931 1.02834 0.85434 1.07193 1.86317 1.48386 1.16924 1.83103 0.94935 0.82083 0.83254 0.80319 1.20256 1.00284 1.03947 0.95428 1.26184 0.97332 1.02659 1.04027 1.84258 1.13646 1.54055 0.98662 0.91171 0.89040 0.91716 0.90116 0.90529 0.91245 0.88451 0.77503 0.91624 0.91767 0.86219 0.90653 0.86693 0.76305 1.17850 1.17456 0.83462 0.80407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.03 8.08 59.85 0.48 0.46 16 2 N -0.98 -0.60 2.52 -114.61 -0.29 -0.88 16 3 C 0.15 -0.11 3.09 -67.93 -0.21 -0.32 16 4 H 0.10 -0.11 5.51 -51.93 -0.29 -0.39 16 5 C -0.12 0.20 4.92 -26.72 -0.13 0.07 16 6 C -0.14 0.04 4.88 -26.73 -0.13 -0.09 16 7 C 0.11 0.02 3.47 -26.73 -0.09 -0.07 16 8 H 0.05 -0.03 8.14 -51.93 -0.42 -0.45 16 9 O -0.57 -0.89 13.32 -35.23 -0.47 -1.36 16 10 C -0.15 -0.05 5.39 -26.73 -0.14 -0.19 16 11 C -0.16 0.10 5.18 -26.73 -0.14 -0.03 16 12 S 2.72 7.99 5.70 -107.50 -0.61 7.38 16 13 O -0.95 -5.64 17.02 -57.17 -0.97 -6.61 16 14 O -0.94 -2.83 10.81 -58.85 -0.64 -3.47 16 15 C -0.78 -1.96 6.56 29.04 0.19 -1.77 16 16 C 0.05 0.10 5.16 -106.25 -0.55 -0.44 16 17 C -0.09 0.01 1.87 36.00 0.07 0.08 16 18 O -0.54 1.00 10.12 -35.37 -0.36 0.64 16 19 Si 0.69 -1.00 30.43 -169.99 -5.17 -6.17 16 20 C -0.17 -0.23 8.74 -41.21 -0.36 -0.59 16 21 C -0.16 -0.04 11.23 29.04 0.33 0.29 16 22 S 0.23 0.30 23.29 -107.50 -2.50 -2.20 16 23 H 0.07 0.00 6.76 -51.93 -0.35 -0.35 16 24 H 0.09 -0.20 4.87 -51.93 -0.25 -0.45 16 25 H 0.06 -0.04 7.89 -51.93 -0.41 -0.45 16 26 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 27 H 0.08 -0.17 6.96 -51.93 -0.36 -0.54 16 28 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.10 0.00 3.57 -51.93 -0.19 -0.19 16 30 H 0.38 -0.78 9.08 45.56 0.41 -0.36 16 31 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 32 H 0.06 0.13 7.60 -51.93 -0.39 -0.26 16 33 H 0.12 0.04 4.91 -51.93 -0.26 -0.21 16 34 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 35 H 0.12 0.00 5.67 -51.93 -0.29 -0.29 16 36 H 0.39 -2.41 8.74 45.56 0.40 -2.01 16 37 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 38 H -0.25 -0.19 6.85 56.52 0.39 0.19 16 39 H 0.15 0.06 5.57 -52.49 -0.29 -0.23 16 40 H 0.18 -0.47 8.06 -52.49 -0.42 -0.90 16 LS Contribution 321.67 15.07 4.85 4.85 Total: 0.00 -8.51 321.67 -10.88 -19.39 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: -4.02 Total: -8.94 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.69 Total: -2.62 kcal Atomic # 7 Polarization: -0.60 SS G_CDS: -0.29 Total: -0.88 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -2.44 Total: -10.80 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: -5.17 Total: -6.17 kcal Atomic # 16 Polarization: 8.29 SS G_CDS: -3.12 Total: 5.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -8.51 -10.88 -19.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.392 kcal (2) G-P(sol) polarization free energy of solvation -8.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds