Wall clock time and date at job start Mon Mar 8 2021 11:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00133 * 2 1 4 4 H 1.09005 * 109.47392 * 239.24933 * 3 2 1 5 5 C 1.53007 * 109.47118 * 359.24634 * 3 2 1 6 6 C 1.53008 * 109.46503 * 60.00124 * 5 3 2 7 7 C 1.53000 * 109.47288 * 60.00024 * 6 5 3 8 8 H 1.09003 * 109.46945 * 59.99532 * 7 6 5 9 9 O 1.42897 * 109.47072 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47057 * 299.99725 * 7 6 5 11 11 C 1.53000 * 109.47162 * 119.24909 * 3 2 1 12 12 S 1.65602 * 119.99893 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40289 * 340.86247 * 12 2 1 14 14 O 1.42103 * 106.39839 * 207.94404 * 12 2 1 15 15 C 1.76199 * 107.21938 * 94.40768 * 12 2 1 16 16 C 1.33386 * 125.20419 * 96.55546 * 15 12 2 17 17 C 1.50694 * 122.53968 * 0.02562 * 16 15 12 18 18 O 1.42901 * 109.47057 * 284.40848 * 17 16 15 19 19 Si 1.86306 * 109.47395 * 164.40860 * 17 16 15 20 20 C 1.38427 * 114.91937 * 179.75531 * 16 15 12 21 21 C 1.33391 * 114.92330 * 0.24158 * 20 16 15 22 22 S 1.75891 * 125.19960 * 276.69078 * 15 12 2 23 23 H 1.09005 * 109.46602 * 264.30229 * 1 2 3 24 24 H 1.08996 * 109.46917 * 24.30023 * 1 2 3 25 25 H 1.08994 * 109.47141 * 144.30188 * 1 2 3 26 26 H 1.08994 * 109.47084 * 179.97438 * 5 3 2 27 27 H 1.08993 * 109.47375 * 300.00384 * 5 3 2 28 28 H 1.09003 * 109.46263 * 179.97438 * 6 5 3 29 29 H 1.08994 * 109.46857 * 299.99412 * 6 5 3 30 30 H 0.96697 * 114.00200 * 179.97438 * 9 7 6 31 31 H 1.09003 * 109.47092 * 179.97438 * 10 7 6 32 32 H 1.09000 * 109.47488 * 300.00036 * 10 7 6 33 33 H 1.08992 * 109.47028 * 59.99967 * 11 3 2 34 34 H 1.09000 * 109.47001 * 180.02562 * 11 3 2 35 35 H 1.08999 * 109.47231 * 44.40694 * 17 16 15 36 36 H 0.96698 * 114.00117 * 180.02562 * 18 17 16 37 37 H 1.48503 * 109.99702 * 298.68010 * 19 17 16 38 38 H 1.48499 * 109.99908 * 59.99656 * 19 17 16 39 39 H 1.08002 * 122.53971 * 180.27357 * 20 16 15 40 40 H 1.07996 * 125.20330 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 2.8343 1.3207 -0.8832 5 6 1.2034 2.4316 -0.0190 6 6 0.3097 2.3587 1.2208 7 6 1.1750 2.4479 2.4794 8 1 1.7201 3.3919 2.4793 9 8 0.3403 2.3804 3.6372 10 6 2.1691 1.2851 2.4983 11 6 3.0629 1.3579 1.2586 12 16 2.2930 -1.4342 -0.0006 13 8 1.3784 -2.4258 0.4458 14 8 3.5366 -1.1798 0.6383 15 6 2.6658 -1.8205 -1.6789 16 6 3.8205 -1.5537 -2.2911 17 6 4.9692 -0.8720 -1.5936 18 8 4.6864 0.5226 -1.4618 19 14 6.5251 -1.0983 -2.5930 20 6 3.8856 -1.9558 -3.6141 21 6 2.7821 -2.5446 -4.0776 22 16 1.5711 -2.6139 -2.8039 23 1 -0.3633 -0.1020 1.0227 24 1 -0.3633 0.9366 -0.4229 25 1 -0.3633 -0.8345 -0.5996 26 1 1.7484 3.3755 -0.0185 27 1 0.5869 2.3680 -0.9155 28 1 -0.3983 3.1874 1.2075 29 1 -0.2353 1.4147 1.2207 30 1 0.8229 2.4308 4.4736 31 1 2.7860 1.3489 3.3947 32 1 1.6242 0.3411 2.4983 33 1 3.7711 0.5295 1.2720 34 1 3.6076 2.3021 1.2588 35 1 5.1055 -1.3101 -0.6049 36 1 5.3847 1.0256 -1.0210 37 1 6.8476 -2.5431 -2.7104 38 1 6.3521 -0.5051 -3.9434 39 1 4.7636 -1.8048 -4.2246 40 1 2.6519 -2.9207 -5.0816 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15557740_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:23 Heat of formation + Delta-G solvation = -82.678678 kcal Electronic energy + Delta-G solvation = -27357.627324 eV Core-core repulsion = 23587.252167 eV Total energy + Delta-G solvation = -3770.375157 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.78968 -40.04928 -38.45667 -37.52667 -37.15262 -36.96308 -34.23699 -32.16527 -31.55598 -30.15556 -28.04607 -26.82461 -24.21653 -23.67404 -22.85233 -21.67068 -20.98241 -19.84047 -19.13519 -18.52771 -18.32510 -17.99947 -17.40017 -17.20222 -16.60807 -16.26251 -15.79735 -15.56936 -15.47055 -14.98287 -14.70457 -14.57816 -14.44198 -14.35740 -14.22890 -13.99262 -13.75915 -13.41166 -13.30989 -13.10827 -12.94469 -12.77381 -12.67125 -12.59630 -12.50416 -12.30584 -11.93981 -11.76148 -11.73130 -11.45256 -11.02943 -10.56561 -10.45373 -10.20209 -9.94085 -9.77393 -4.96677 -0.92346 -0.66749 0.19086 0.54220 1.07177 1.27176 1.65120 1.84358 1.93230 2.51829 3.16917 3.29525 3.38776 3.59384 3.80601 3.86213 3.89724 3.94394 4.01092 4.17983 4.28568 4.35061 4.40406 4.46181 4.47276 4.58319 4.59589 4.63967 4.68765 4.81022 4.84021 4.88835 4.97458 5.02843 5.17684 5.25340 5.28608 5.35084 5.35707 5.67029 5.70811 6.88830 6.89812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.980 5.980 3 C 0.146 3.854 4 H 0.111 0.889 5 C -0.112 4.112 6 C -0.149 4.149 7 C 0.104 3.896 8 H 0.065 0.935 9 O -0.592 6.592 10 C -0.148 4.148 11 C -0.160 4.160 12 S 2.720 3.280 13 O -0.991 6.991 14 O -0.943 6.943 15 C -0.796 4.796 16 C 0.045 3.955 17 C -0.102 4.102 18 O -0.543 6.543 19 Si 0.783 3.217 20 C -0.190 4.190 21 C -0.150 4.150 22 S 0.214 5.786 23 H 0.062 0.938 24 H 0.112 0.888 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.390 0.610 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.407 0.593 37 H -0.295 1.295 38 H -0.275 1.275 39 H 0.156 0.844 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 4.934 -3.104 6.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.821 5.821 3 C 0.042 3.958 4 H 0.128 0.872 5 C -0.150 4.150 6 C -0.186 4.186 7 C 0.046 3.954 8 H 0.083 0.917 9 O -0.400 6.400 10 C -0.186 4.186 11 C -0.199 4.199 12 S 2.809 3.191 13 O -0.981 6.981 14 O -0.933 6.933 15 C -0.997 4.997 16 C 0.028 3.972 17 C -0.214 4.214 18 O -0.354 6.354 19 Si 0.687 3.313 20 C -0.219 4.219 21 C -0.288 4.288 22 S 0.480 5.520 23 H 0.081 0.919 24 H 0.130 0.870 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.240 0.760 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.260 0.740 37 H -0.223 1.223 38 H -0.202 1.202 39 H 0.173 0.827 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.726 3.290 -3.787 5.305 hybrid contribution 1.104 0.032 -0.238 1.130 sum 2.830 3.322 -4.025 5.937 Atomic orbital electron populations 1.22101 0.78106 1.04821 1.02180 1.57236 1.15154 1.20774 1.88927 1.21387 0.93123 0.81394 0.99929 0.87153 1.21742 0.97545 0.98115 0.97618 1.22234 0.98788 1.04655 0.92874 1.21902 0.90766 0.96994 0.85747 0.91713 1.86468 1.39111 1.97081 1.17370 1.22188 0.98133 0.98617 0.99691 1.22541 0.98694 1.06173 0.92452 1.01127 0.73069 0.72303 0.72587 1.93556 1.65303 1.59348 1.79902 1.93411 1.43647 1.84147 1.72083 1.35785 1.08048 1.24779 1.31074 1.18470 0.92704 0.93152 0.92922 1.25090 1.02830 0.86275 1.07189 1.86272 1.49662 1.16008 1.83490 0.93944 0.79758 0.79744 0.77842 1.20452 1.01111 1.04883 0.95486 1.26560 0.96257 1.01154 1.04779 1.84273 1.14203 1.54337 0.99167 0.91937 0.86992 0.91744 0.88533 0.89641 0.91398 0.89176 0.76039 0.91181 0.94055 0.87277 0.88425 0.87195 0.74030 1.22251 1.20209 0.82716 0.77520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.02 8.08 127.77 1.03 1.06 16 2 N -0.98 -1.89 2.52 -516.50 -1.30 -3.19 16 3 C 0.15 -0.29 3.09 44.99 0.14 -0.15 16 4 H 0.11 -0.33 5.51 -2.38 -0.01 -0.35 16 5 C -0.11 0.51 4.92 30.60 0.15 0.66 16 6 C -0.15 0.13 4.88 30.60 0.15 0.28 16 7 C 0.10 0.03 3.47 30.59 0.11 0.13 16 8 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 9 O -0.59 -2.08 13.32 -148.98 -1.98 -4.06 16 10 C -0.15 -0.15 5.39 30.59 0.16 0.01 16 11 C -0.16 0.28 5.18 30.60 0.16 0.44 16 12 S 2.72 19.99 5.70 -56.49 -0.32 19.67 16 13 O -0.99 -14.08 17.02 -128.00 -2.18 -16.26 16 14 O -0.94 -6.86 10.81 -126.40 -1.37 -8.22 16 15 C -0.80 -4.75 6.56 66.72 0.44 -4.31 16 16 C 0.05 0.19 5.16 -20.92 -0.11 0.09 16 17 C -0.10 0.03 1.87 71.23 0.13 0.16 16 18 O -0.54 2.46 10.12 -148.85 -1.51 0.96 16 19 Si 0.78 -2.47 30.43 68.60 2.09 -0.38 16 20 C -0.19 -0.50 8.74 21.22 0.19 -0.31 16 21 C -0.15 -0.01 11.23 66.72 0.75 0.74 16 22 S 0.21 0.72 23.29 -56.49 -1.32 -0.59 16 23 H 0.06 0.11 6.76 -2.38 -0.02 0.10 16 24 H 0.11 -0.48 4.87 -2.39 -0.01 -0.49 16 25 H 0.06 0.01 7.89 -2.39 -0.02 -0.01 16 26 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 27 H 0.09 -0.52 6.96 -2.39 -0.02 -0.53 16 28 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.09 0.05 3.57 -2.39 -0.01 0.04 16 30 H 0.39 -1.45 9.08 -74.06 -0.67 -2.12 16 31 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.04 0.24 7.60 -2.39 -0.02 0.22 16 33 H 0.11 0.09 4.91 -2.39 -0.01 0.08 16 34 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H 0.11 0.06 5.67 -2.39 -0.01 0.05 16 36 H 0.41 -5.66 8.74 -74.06 -0.65 -6.31 16 37 H -0.30 -1.05 7.11 99.48 0.71 -0.35 16 38 H -0.28 -0.29 6.85 99.48 0.68 0.39 16 39 H 0.16 0.09 5.57 -2.91 -0.02 0.07 16 40 H 0.21 -1.41 8.06 -2.91 -0.02 -1.43 16 Total: 0.00 -20.75 321.67 -4.79 -25.54 By element: Atomic # 1 Polarization: -12.05 SS G_CDS: -0.20 Total: -12.25 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 3.30 Total: -1.21 kcal Atomic # 7 Polarization: -1.89 SS G_CDS: -1.30 Total: -3.19 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -7.04 Total: -27.59 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: 2.09 Total: -0.38 kcal Atomic # 16 Polarization: 20.71 SS G_CDS: -1.64 Total: 19.07 kcal Total: -20.75 -4.79 -25.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.138 kcal (2) G-P(sol) polarization free energy of solvation -20.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds