Wall clock time and date at job start Mon Mar 8 2021 11:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 120.00488 * 2 1 4 4 H 1.08999 * 109.47056 * 173.69145 * 3 2 1 5 5 C 1.52999 * 109.46977 * 293.69072 * 3 2 1 6 6 C 1.52996 * 109.47156 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46803 * 299.99809 * 6 5 3 8 8 H 1.09007 * 109.47194 * 180.02562 * 7 6 5 9 9 O 1.42907 * 109.47352 * 299.99810 * 7 6 5 10 10 C 1.52996 * 109.47618 * 60.00165 * 7 6 5 11 11 C 1.52998 * 109.46956 * 53.68865 * 3 2 1 12 12 S 1.65608 * 119.99724 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40152 * 31.25615 * 12 2 1 14 14 O 1.42095 * 106.40175 * 164.17695 * 12 2 1 15 15 C 1.76206 * 107.21832 * 277.72083 * 12 2 1 16 16 C 1.33386 * 122.53856 * 165.02405 * 15 12 2 17 17 C 1.50699 * 125.20454 * 0.02764 * 16 15 12 18 18 O 1.42896 * 109.47393 * 40.17786 * 17 16 15 19 19 Si 1.86299 * 109.47173 * 160.18343 * 17 16 15 20 20 S 1.75886 * 109.59129 * 179.97438 * 16 15 12 21 21 C 1.75883 * 90.97203 * 0.02562 * 20 16 15 22 22 C 1.33396 * 109.59194 * 359.73010 * 21 20 16 23 23 H 1.08998 * 109.46819 * 89.99766 * 1 2 3 24 24 H 1.08998 * 109.47011 * 209.99957 * 1 2 3 25 25 H 1.09004 * 109.46638 * 330.00396 * 1 2 3 26 26 H 1.09007 * 109.47014 * 299.99855 * 5 3 2 27 27 H 1.09001 * 109.47237 * 59.99598 * 5 3 2 28 28 H 1.09001 * 109.47440 * 59.99644 * 6 5 3 29 29 H 1.09010 * 109.47003 * 179.97438 * 6 5 3 30 30 H 0.96699 * 113.99634 * 180.02562 * 9 7 6 31 31 H 1.08990 * 109.47591 * 179.97438 * 10 7 6 32 32 H 1.08999 * 109.46915 * 59.99400 * 10 7 6 33 33 H 1.08999 * 109.47467 * 300.00028 * 11 3 2 34 34 H 1.08996 * 109.47427 * 60.00369 * 11 3 2 35 35 H 1.09003 * 109.46907 * 280.18205 * 17 16 15 36 36 H 0.96708 * 113.99731 * 66.64300 * 18 17 16 37 37 H 1.48498 * 110.00055 * 179.97438 * 19 17 16 38 38 H 1.48493 * 109.99939 * 301.31494 * 19 17 16 39 39 H 1.07993 * 125.20631 * 179.97438 * 21 20 16 40 40 H 1.08000 * 122.53901 * 180.24484 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 1 3.2639 1.0725 0.1129 5 6 1.9507 2.0001 -1.3209 6 6 2.7163 3.3247 -1.3212 7 6 2.2322 4.1938 -0.1588 8 1 2.7773 5.1377 -0.1593 9 8 0.8343 4.4515 -0.3066 10 6 2.4790 3.4624 1.1622 11 6 1.7129 2.1374 1.1624 12 16 2.2930 -1.4342 0.0006 13 8 1.4844 -2.3647 -0.7062 14 8 3.6294 -1.1262 -0.3712 15 6 2.3580 -1.9983 1.6687 16 6 2.6912 -3.2491 1.9907 17 6 3.0513 -4.3327 1.0073 18 8 3.8594 -3.7815 -0.0343 19 14 3.9987 -5.6765 1.8833 20 16 2.6476 -3.4397 3.7386 21 6 2.1642 -1.7606 3.9397 22 6 2.0723 -1.1754 2.7445 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 2.2961 1.3811 -2.1491 27 1 0.8845 2.1962 -1.4339 28 1 3.7825 3.1282 -1.2085 29 1 2.5408 3.8456 -2.2626 30 1 0.4588 4.9986 0.3967 31 1 2.1345 4.0817 1.9902 32 1 3.5452 3.2659 1.2749 33 1 0.6467 2.3336 1.0495 34 1 1.8888 1.6164 2.1034 35 1 2.1408 -4.7509 0.5780 36 1 4.7306 -3.4825 0.2603 37 1 4.3592 -6.7516 0.9245 38 1 5.2263 -5.1129 2.5001 39 1 1.9750 -1.2762 4.8862 40 1 1.7927 -0.1390 2.6251 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15557740_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:28 Heat of formation + Delta-G solvation = -110.489031 kcal Electronic energy + Delta-G solvation = -26643.328140 eV Core-core repulsion = 22871.747035 eV Total energy + Delta-G solvation = -3771.581105 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53191 -39.67923 -37.97749 -37.86540 -37.43438 -36.53107 -34.63828 -31.93783 -31.82574 -29.99286 -27.58844 -27.19070 -24.54142 -23.78422 -22.98154 -21.66826 -20.69543 -19.71327 -19.32054 -18.41963 -18.07571 -17.62997 -17.44235 -17.14841 -16.66244 -16.38932 -15.73042 -15.56958 -15.49276 -15.31105 -15.04797 -14.48485 -14.35640 -14.16949 -14.08601 -13.88472 -13.69327 -13.32641 -13.22230 -13.17699 -12.85904 -12.79759 -12.68495 -12.61329 -12.50025 -12.21964 -12.17394 -12.13347 -11.59920 -11.42377 -11.26704 -11.17279 -10.81921 -10.14082 -10.03603 -9.80110 -5.25541 -0.59983 -0.49928 0.33091 0.62012 0.97835 1.14138 1.44745 1.76298 1.97509 2.85938 3.07120 3.23356 3.27547 3.49871 3.56555 3.69450 3.83722 3.89788 3.98572 4.09977 4.11715 4.18868 4.30758 4.33453 4.40743 4.41439 4.49330 4.55663 4.64409 4.71663 4.80356 4.84212 4.87714 4.92270 5.01074 5.07319 5.12882 5.19471 5.27457 5.47657 5.57796 6.14188 6.66654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.999 5.999 3 C 0.145 3.855 4 H 0.101 0.899 5 C -0.123 4.123 6 C -0.113 4.113 7 C 0.103 3.897 8 H 0.057 0.943 9 O -0.562 6.562 10 C -0.152 4.152 11 C -0.127 4.127 12 S 2.715 3.285 13 O -0.942 6.942 14 O -0.948 6.948 15 C -0.666 4.666 16 C -0.099 4.099 17 C -0.077 4.077 18 O -0.520 6.520 19 Si 0.679 3.321 20 S 0.159 5.841 21 C -0.210 4.210 22 C -0.086 4.086 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.376 0.624 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.150 0.850 36 H 0.387 0.613 37 H -0.227 1.227 38 H -0.239 1.239 39 H 0.175 0.825 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 2.371 6.398 6.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.837 5.837 3 C 0.040 3.960 4 H 0.119 0.881 5 C -0.162 4.162 6 C -0.151 4.151 7 C 0.044 3.956 8 H 0.075 0.925 9 O -0.368 6.368 10 C -0.190 4.190 11 C -0.166 4.166 12 S 2.801 3.199 13 O -0.932 6.932 14 O -0.938 6.938 15 C -0.764 4.764 16 C -0.220 4.220 17 C -0.188 4.188 18 O -0.328 6.328 19 Si 0.575 3.425 20 S 0.423 5.577 21 C -0.345 4.345 22 C -0.114 4.114 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.223 0.777 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.167 0.833 36 H 0.237 0.763 37 H -0.150 1.150 38 H -0.163 1.163 39 H 0.192 0.808 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.476 -0.229 5.908 5.931 hybrid contribution 0.093 2.477 0.098 2.481 sum -0.382 2.248 6.005 6.424 Atomic orbital electron populations 1.21537 0.78013 1.03201 1.02931 1.57622 1.15613 1.21078 1.89409 1.21041 0.96402 0.82550 0.96026 0.88082 1.21787 1.02356 0.95563 0.96542 1.21554 0.99906 0.95272 0.98349 1.21805 0.82420 0.96970 0.94427 0.92457 1.86537 1.23047 1.74538 1.52678 1.22253 1.01596 0.96927 0.98258 1.21893 1.01815 0.95276 0.97601 1.01686 0.73396 0.71750 0.73021 1.93573 1.69769 1.60939 1.68949 1.93545 1.35614 1.83757 1.80914 1.29988 1.17603 1.02243 1.26585 1.24947 1.00493 0.97427 0.99144 1.25053 1.02444 0.99435 0.91843 1.86680 1.31257 1.81048 1.33830 0.95127 0.83596 0.79086 0.84710 1.84200 1.63935 1.10706 0.98878 1.25890 1.09037 0.97140 1.02457 1.19766 1.00996 1.00588 0.90042 0.91787 0.91159 0.90264 0.91464 0.90144 0.90219 0.90616 0.77702 0.91100 0.90570 0.90075 0.91698 0.83275 0.76333 1.14981 1.16267 0.80777 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.05 9.61 59.85 0.58 0.52 16 2 N -1.00 -0.94 2.49 -114.61 -0.29 -1.23 16 3 C 0.15 0.02 2.50 -67.93 -0.17 -0.15 16 4 H 0.10 0.08 6.83 -51.93 -0.35 -0.28 16 5 C -0.12 -0.07 5.15 -26.73 -0.14 -0.21 16 6 C -0.11 0.05 5.66 -26.73 -0.15 -0.10 16 7 C 0.10 -0.16 3.77 -26.73 -0.10 -0.26 16 8 H 0.06 -0.12 8.14 -51.93 -0.42 -0.55 16 9 O -0.56 0.46 11.97 -35.23 -0.42 0.04 16 10 C -0.15 0.38 5.64 -26.71 -0.15 0.23 16 11 C -0.13 0.24 4.88 -26.70 -0.13 0.11 16 12 S 2.71 10.32 4.07 -107.50 -0.44 9.89 16 13 O -0.94 -6.22 16.42 -61.92 -1.02 -7.24 16 14 O -0.95 -5.51 15.38 -64.76 -1.00 -6.51 16 15 C -0.67 -1.41 5.72 -41.21 -0.24 -1.64 16 16 C -0.10 -0.16 5.78 -36.00 -0.21 -0.37 16 17 C -0.08 -0.11 2.35 36.01 0.08 -0.03 16 18 O -0.52 -1.80 9.80 -59.26 -0.58 -2.39 16 19 Si 0.68 -0.49 31.06 -169.99 -5.28 -5.77 16 20 S 0.16 -0.11 20.84 -107.50 -2.24 -2.35 16 21 C -0.21 0.20 11.23 29.04 0.33 0.52 16 22 C -0.09 0.00 9.74 -41.21 -0.40 -0.41 16 23 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 24 H 0.07 -0.08 7.98 -51.93 -0.41 -0.49 16 25 H 0.08 -0.20 6.12 -51.93 -0.32 -0.51 16 26 H 0.07 0.10 8.14 -51.93 -0.42 -0.33 16 27 H 0.08 0.08 7.38 -51.93 -0.38 -0.30 16 28 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 29 H 0.08 -0.01 8.14 -51.92 -0.42 -0.43 16 30 H 0.38 -1.62 9.08 45.56 0.41 -1.21 16 31 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 32 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 33 H 0.08 -0.16 6.03 -51.93 -0.31 -0.47 16 34 H 0.06 -0.18 6.02 -51.93 -0.31 -0.49 16 35 H 0.15 0.13 7.96 -51.93 -0.41 -0.29 16 36 H 0.39 0.28 8.56 45.56 0.39 0.67 16 37 H -0.23 -0.33 7.11 56.52 0.40 0.07 16 38 H -0.24 -0.18 7.11 56.52 0.40 0.23 16 39 H 0.17 -0.61 8.06 -52.49 -0.42 -1.03 16 40 H 0.15 -0.29 5.62 -52.49 -0.30 -0.59 16 LS Contribution 334.89 15.07 5.05 5.05 Total: 0.00 -9.03 334.89 -11.49 -20.52 By element: Atomic # 1 Polarization: -3.68 SS G_CDS: -4.58 Total: -8.26 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.70 Total: -1.77 kcal Atomic # 7 Polarization: -0.94 SS G_CDS: -0.29 Total: -1.23 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -3.01 Total: -16.09 kcal Atomic # 14 Polarization: -0.49 SS G_CDS: -5.28 Total: -5.77 kcal Atomic # 16 Polarization: 10.21 SS G_CDS: -2.68 Total: 7.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -9.03 -11.49 -20.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.964 kcal (2) G-P(sol) polarization free energy of solvation -9.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds