Wall clock time and date at job start Mon Mar 8 2021 11:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 120.00488 * 2 1 4 4 H 1.08999 * 109.47056 * 173.69145 * 3 2 1 5 5 C 1.52999 * 109.46977 * 293.69072 * 3 2 1 6 6 C 1.52996 * 109.47156 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46803 * 299.99809 * 6 5 3 8 8 H 1.09007 * 109.47194 * 180.02562 * 7 6 5 9 9 O 1.42907 * 109.47352 * 299.99810 * 7 6 5 10 10 C 1.52996 * 109.47618 * 60.00165 * 7 6 5 11 11 C 1.52998 * 109.46956 * 53.68865 * 3 2 1 12 12 S 1.65608 * 119.99724 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40152 * 31.25615 * 12 2 1 14 14 O 1.42095 * 106.40175 * 164.17695 * 12 2 1 15 15 C 1.76206 * 107.21832 * 277.72083 * 12 2 1 16 16 C 1.33386 * 122.53856 * 165.02405 * 15 12 2 17 17 C 1.50699 * 125.20454 * 0.02764 * 16 15 12 18 18 O 1.42896 * 109.47393 * 40.17786 * 17 16 15 19 19 Si 1.86299 * 109.47173 * 160.18343 * 17 16 15 20 20 S 1.75886 * 109.59129 * 179.97438 * 16 15 12 21 21 C 1.75883 * 90.97203 * 0.02562 * 20 16 15 22 22 C 1.33396 * 109.59194 * 359.73010 * 21 20 16 23 23 H 1.08998 * 109.46819 * 89.99766 * 1 2 3 24 24 H 1.08998 * 109.47011 * 209.99957 * 1 2 3 25 25 H 1.09004 * 109.46638 * 330.00396 * 1 2 3 26 26 H 1.09007 * 109.47014 * 299.99855 * 5 3 2 27 27 H 1.09001 * 109.47237 * 59.99598 * 5 3 2 28 28 H 1.09001 * 109.47440 * 59.99644 * 6 5 3 29 29 H 1.09010 * 109.47003 * 179.97438 * 6 5 3 30 30 H 0.96699 * 113.99634 * 180.02562 * 9 7 6 31 31 H 1.08990 * 109.47591 * 179.97438 * 10 7 6 32 32 H 1.08999 * 109.46915 * 59.99400 * 10 7 6 33 33 H 1.08999 * 109.47467 * 300.00028 * 11 3 2 34 34 H 1.08996 * 109.47427 * 60.00369 * 11 3 2 35 35 H 1.09003 * 109.46907 * 280.18205 * 17 16 15 36 36 H 0.96708 * 113.99731 * 66.64300 * 18 17 16 37 37 H 1.48498 * 110.00055 * 179.97438 * 19 17 16 38 38 H 1.48493 * 109.99939 * 301.31494 * 19 17 16 39 39 H 1.07993 * 125.20631 * 179.97438 * 21 20 16 40 40 H 1.08000 * 122.53901 * 180.24484 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 1 3.2639 1.0725 0.1129 5 6 1.9507 2.0001 -1.3209 6 6 2.7163 3.3247 -1.3212 7 6 2.2322 4.1938 -0.1588 8 1 2.7773 5.1377 -0.1593 9 8 0.8343 4.4515 -0.3066 10 6 2.4790 3.4624 1.1622 11 6 1.7129 2.1374 1.1624 12 16 2.2930 -1.4342 0.0006 13 8 1.4844 -2.3647 -0.7062 14 8 3.6294 -1.1262 -0.3712 15 6 2.3580 -1.9983 1.6687 16 6 2.6912 -3.2491 1.9907 17 6 3.0513 -4.3327 1.0073 18 8 3.8594 -3.7815 -0.0343 19 14 3.9987 -5.6765 1.8833 20 16 2.6476 -3.4397 3.7386 21 6 2.1642 -1.7606 3.9397 22 6 2.0723 -1.1754 2.7445 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 2.2961 1.3811 -2.1491 27 1 0.8845 2.1962 -1.4339 28 1 3.7825 3.1282 -1.2085 29 1 2.5408 3.8456 -2.2626 30 1 0.4588 4.9986 0.3967 31 1 2.1345 4.0817 1.9902 32 1 3.5452 3.2659 1.2749 33 1 0.6467 2.3336 1.0495 34 1 1.8888 1.6164 2.1034 35 1 2.1408 -4.7509 0.5780 36 1 4.7306 -3.4825 0.2603 37 1 4.3592 -6.7516 0.9245 38 1 5.2263 -5.1129 2.5001 39 1 1.9750 -1.2762 4.8862 40 1 1.7927 -0.1390 2.6251 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15557740_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:27 Heat of formation + Delta-G solvation = -112.853162 kcal Electronic energy + Delta-G solvation = -26643.430656 eV Core-core repulsion = 22871.747035 eV Total energy + Delta-G solvation = -3771.683621 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46482 -39.73596 -38.32269 -37.93766 -37.44137 -36.87779 -34.59358 -31.91012 -31.78336 -29.93737 -27.63563 -27.19632 -24.56499 -23.71154 -22.94487 -21.72411 -20.63373 -19.86463 -19.39378 -18.61250 -18.08461 -17.57057 -17.48935 -17.22824 -16.74898 -16.44854 -15.74022 -15.63660 -15.51689 -15.27693 -15.09540 -14.45472 -14.31698 -14.25800 -14.14345 -13.85905 -13.74246 -13.42017 -13.24760 -13.19165 -13.05567 -12.90751 -12.80249 -12.71766 -12.52004 -12.29667 -12.18177 -12.05395 -11.68438 -11.37145 -11.28339 -11.17678 -10.67059 -10.14413 -10.06822 -9.74779 -5.23041 -0.80604 -0.53448 0.34424 0.63144 0.98930 1.14652 1.46373 1.75575 1.84350 2.65480 2.98735 3.24354 3.36489 3.47185 3.55200 3.76362 3.88933 3.96763 4.08449 4.12714 4.17731 4.24538 4.30547 4.39990 4.44759 4.50821 4.55009 4.60488 4.74171 4.76010 4.87159 4.89533 5.01709 5.03071 5.06370 5.13753 5.22299 5.26112 5.32461 5.49651 5.55673 6.08157 6.98436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.994 5.994 3 C 0.143 3.857 4 H 0.092 0.908 5 C -0.123 4.123 6 C -0.117 4.117 7 C 0.104 3.896 8 H 0.066 0.934 9 O -0.580 6.580 10 C -0.148 4.148 11 C -0.123 4.123 12 S 2.717 3.283 13 O -0.982 6.982 14 O -0.980 6.980 15 C -0.675 4.675 16 C -0.124 4.124 17 C -0.102 4.102 18 O -0.546 6.546 19 Si 0.768 3.232 20 S 0.198 5.802 21 C -0.205 4.205 22 C -0.098 4.098 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.391 0.609 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.393 0.607 37 H -0.261 1.261 38 H -0.254 1.254 39 H 0.205 0.795 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.836 3.237 9.081 9.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.833 5.833 3 C 0.038 3.962 4 H 0.110 0.890 5 C -0.163 4.163 6 C -0.155 4.155 7 C 0.045 3.955 8 H 0.084 0.916 9 O -0.388 6.388 10 C -0.187 4.187 11 C -0.161 4.161 12 S 2.808 3.192 13 O -0.973 6.973 14 O -0.970 6.970 15 C -0.777 4.777 16 C -0.245 4.245 17 C -0.210 4.210 18 O -0.355 6.355 19 Si 0.665 3.335 20 S 0.462 5.538 21 C -0.340 4.340 22 C -0.126 4.126 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.122 0.878 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.240 0.760 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.163 0.837 36 H 0.244 0.756 37 H -0.186 1.186 38 H -0.179 1.179 39 H 0.222 0.778 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.914 0.672 8.567 8.641 hybrid contribution 0.197 2.220 -0.735 2.347 sum -0.716 2.892 7.832 8.379 Atomic orbital electron populations 1.21717 0.76982 1.04619 1.02972 1.57410 1.16129 1.20313 1.89465 1.21146 0.96015 0.82306 0.96771 0.89015 1.21768 1.02099 0.96016 0.96372 1.21595 1.00153 0.94845 0.98893 1.21786 0.82323 0.97129 0.94260 0.91627 1.86502 1.23346 1.75084 1.53832 1.22248 1.01705 0.96558 0.98172 1.21890 1.02063 0.95231 0.96965 1.01131 0.72601 0.71836 0.73655 1.93514 1.70356 1.62537 1.70849 1.93492 1.37181 1.84214 1.82102 1.29748 1.19060 1.03090 1.25767 1.25105 1.01087 0.97347 1.00922 1.25517 1.02878 1.00614 0.92026 1.86645 1.31982 1.81550 1.35372 0.94200 0.81214 0.75563 0.82508 1.84034 1.62768 1.10876 0.96096 1.26324 1.07504 0.96904 1.03292 1.19941 1.01578 1.01358 0.89720 0.92574 0.90673 0.87841 0.93365 0.90623 0.89760 0.91391 0.75961 0.89220 0.90386 0.89622 0.90275 0.83682 0.75588 1.18607 1.17866 0.77776 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.05 9.61 127.77 1.23 1.18 16 2 N -0.99 -3.02 2.49 -516.52 -1.29 -4.31 16 3 C 0.14 0.15 2.50 44.99 0.11 0.26 16 4 H 0.09 0.27 6.83 -2.39 -0.02 0.25 16 5 C -0.12 -0.33 5.15 30.59 0.16 -0.18 16 6 C -0.12 0.00 5.66 30.59 0.17 0.18 16 7 C 0.10 -0.37 3.77 30.59 0.12 -0.26 16 8 H 0.07 -0.34 8.14 -2.38 -0.02 -0.36 16 9 O -0.58 1.37 11.97 -148.98 -1.78 -0.42 16 10 C -0.15 0.96 5.64 30.61 0.17 1.13 16 11 C -0.12 0.61 4.88 30.61 0.15 0.76 16 12 S 2.72 26.39 4.07 -56.49 -0.23 26.17 16 13 O -0.98 -15.86 16.42 -123.46 -2.03 -17.89 16 14 O -0.98 -14.08 15.38 -120.75 -1.86 -15.93 16 15 C -0.67 -3.27 5.72 21.22 0.12 -3.15 16 16 C -0.12 -0.46 5.78 24.59 0.14 -0.31 16 17 C -0.10 -0.46 2.35 71.24 0.17 -0.29 16 18 O -0.55 -5.20 9.80 -126.00 -1.23 -6.44 16 19 Si 0.77 -0.82 31.06 68.60 2.13 1.31 16 20 S 0.20 -0.55 20.84 -56.49 -1.18 -1.72 16 21 C -0.20 0.83 11.23 66.72 0.75 1.58 16 22 C -0.10 0.09 9.74 21.22 0.21 0.30 16 23 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 24 H 0.07 -0.12 7.98 -2.39 -0.02 -0.13 16 25 H 0.10 -0.59 6.12 -2.38 -0.01 -0.60 16 26 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 27 H 0.08 0.26 7.38 -2.39 -0.02 0.24 16 28 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.07 0.08 8.14 -2.38 -0.02 0.06 16 30 H 0.39 -3.88 9.08 -74.06 -0.67 -4.55 16 31 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.09 -0.48 6.03 -2.39 -0.01 -0.49 16 34 H 0.08 -0.60 6.02 -2.39 -0.01 -0.61 16 35 H 0.15 0.58 7.96 -2.39 -0.02 0.56 16 36 H 0.39 1.62 8.56 -74.05 -0.63 0.99 16 37 H -0.26 -1.09 7.11 99.48 0.71 -0.38 16 38 H -0.25 -0.31 7.11 99.48 0.71 0.40 16 39 H 0.21 -2.16 8.06 -2.91 -0.02 -2.18 16 40 H 0.17 -0.92 5.62 -2.91 -0.02 -0.94 16 Total: 0.00 -22.88 334.89 -4.15 -27.03 By element: Atomic # 1 Polarization: -8.82 SS G_CDS: -0.18 Total: -9.00 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 3.49 Total: 1.20 kcal Atomic # 7 Polarization: -3.02 SS G_CDS: -1.29 Total: -4.31 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -6.90 Total: -40.67 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: 2.13 Total: 1.31 kcal Atomic # 16 Polarization: 25.85 SS G_CDS: -1.41 Total: 24.44 kcal Total: -22.88 -4.15 -27.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.821 kcal (2) G-P(sol) polarization free energy of solvation -22.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds