Wall clock time and date at job start Mon Mar 8 2021 11:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 120.00157 * 2 1 4 4 H 1.08993 * 109.47378 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47050 * 300.00785 * 3 2 1 6 6 C 1.52997 * 109.46991 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47131 * 299.99311 * 6 5 3 8 8 H 1.09000 * 109.47054 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.47379 * 300.00404 * 7 6 5 10 10 C 1.53002 * 109.46972 * 60.00459 * 7 6 5 11 11 C 1.52997 * 109.46817 * 299.99733 * 10 7 6 12 12 S 1.65604 * 120.00348 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.39826 * 23.53643 * 12 2 1 14 14 O 1.42096 * 106.40403 * 156.45884 * 12 2 1 15 15 C 1.76198 * 107.21445 * 269.99913 * 12 2 1 16 16 C 1.33386 * 122.54383 * 90.02372 * 15 12 2 17 17 S 1.75879 * 109.59851 * 180.02562 * 16 15 12 18 18 C 1.75886 * 90.97045 * 359.97438 * 17 16 15 19 19 C 1.50696 * 125.20362 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47165 * 119.97688 * 19 18 17 21 21 Si 1.86300 * 109.47438 * 359.97438 * 19 18 17 22 22 C 1.33397 * 109.59169 * 359.73167 * 18 17 16 23 23 H 1.08997 * 109.47263 * 89.99773 * 1 2 3 24 24 H 1.09003 * 109.46653 * 209.99645 * 1 2 3 25 25 H 1.08997 * 109.47041 * 329.99779 * 1 2 3 26 26 H 1.09002 * 109.46719 * 299.99449 * 5 3 2 27 27 H 1.08993 * 109.47839 * 59.99291 * 5 3 2 28 28 H 1.09001 * 109.47289 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.47611 * 59.99933 * 6 5 3 30 30 H 0.96708 * 113.99549 * 299.99481 * 9 7 6 31 31 H 1.09002 * 109.47070 * 179.97438 * 10 7 6 32 32 H 1.08996 * 109.47407 * 59.99513 * 10 7 6 33 33 H 1.09001 * 109.47502 * 300.00518 * 11 10 7 34 34 H 1.09001 * 109.47289 * 180.02562 * 11 10 7 35 35 H 1.08005 * 125.20067 * 359.97438 * 16 15 12 36 36 H 1.09000 * 109.47220 * 239.97660 * 19 18 17 37 37 H 0.96699 * 114.00218 * 299.99920 * 20 19 18 38 38 H 1.48500 * 109.99972 * 58.67694 * 21 19 18 39 39 H 1.48495 * 110.00152 * 179.97438 * 21 19 18 40 40 H 1.07998 * 122.53840 * 180.24171 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2691 1.0696 0.0005 5 6 1.8278 2.0711 -1.2491 6 6 2.5923 3.3964 -1.2488 7 6 2.2222 4.1984 0.0004 8 1 2.7665 5.1427 0.0004 9 8 0.8172 4.4590 0.0002 10 6 2.5919 3.3960 1.2496 11 6 1.8274 2.0708 1.2493 12 16 2.2931 -1.4341 -0.0006 13 8 1.4114 -2.4063 -0.5455 14 8 3.5760 -1.1565 -0.5450 15 6 2.5539 -1.8864 1.6822 16 6 1.6866 -2.6333 2.3671 17 16 2.2810 -2.8755 4.0046 18 6 3.7169 -1.9213 3.6565 19 6 4.8257 -1.6314 4.6351 20 8 6.0569 -2.1494 4.1271 21 14 4.4391 -2.4391 6.2688 22 6 3.6775 -1.4988 2.3918 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 2.0911 1.4996 -2.1392 27 1 0.7562 2.2703 -1.2492 28 1 2.3293 3.9678 -2.1389 29 1 3.6641 3.1976 -1.2487 30 1 0.5112 4.9652 -0.7648 31 1 2.3286 3.9676 2.1397 32 1 3.6636 3.1972 1.2498 33 1 0.7556 2.2695 1.2491 34 1 2.0904 1.4993 2.1395 35 1 0.7604 -3.0281 1.9762 36 1 4.9147 -0.5540 4.7745 37 1 6.0501 -3.1048 3.9785 38 1 4.2836 -3.9046 6.0866 39 1 5.5253 -2.1611 7.2424 40 1 4.4607 -0.8964 1.9559 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15557740_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:30 Heat of formation + Delta-G solvation = -115.102526 kcal Electronic energy + Delta-G solvation = -26019.791804 eV Core-core repulsion = 22248.010643 eV Total energy + Delta-G solvation = -3771.781161 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.51302 -39.54161 -38.25934 -37.67735 -37.55072 -36.82004 -34.65285 -31.90867 -31.84533 -30.00438 -27.35381 -27.18223 -24.92774 -23.77853 -23.10169 -21.35746 -20.68327 -19.78122 -19.21487 -18.62478 -17.98076 -17.75451 -17.64518 -17.34700 -16.47988 -16.42946 -15.77081 -15.69538 -15.45993 -15.30826 -14.83359 -14.45131 -14.32206 -14.23941 -14.15288 -13.85303 -13.69838 -13.43903 -13.24349 -13.21409 -13.12968 -12.96116 -12.90115 -12.60818 -12.47863 -12.36668 -12.28075 -12.12883 -11.61978 -11.44115 -11.27705 -10.89948 -10.80132 -10.26192 -10.05371 -9.86012 -5.20713 -0.76752 -0.49195 0.29261 0.55170 0.94188 1.13756 1.43251 1.78627 1.97471 2.74368 3.12454 3.21319 3.28606 3.51832 3.54736 3.66611 3.79343 3.86420 3.87404 4.07908 4.14550 4.19498 4.33090 4.35662 4.36327 4.43202 4.53216 4.56741 4.59695 4.71423 4.78742 4.86964 4.89579 4.91046 4.99301 5.04794 5.14814 5.16760 5.23763 5.44591 5.52822 6.20580 6.66650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.992 5.992 3 C 0.147 3.853 4 H 0.100 0.900 5 C -0.121 4.121 6 C -0.153 4.153 7 C 0.103 3.897 8 H 0.057 0.943 9 O -0.564 6.564 10 C -0.112 4.112 11 C -0.126 4.126 12 S 2.702 3.298 13 O -0.952 6.952 14 O -0.948 6.948 15 C -0.687 4.687 16 C -0.085 4.085 17 S 0.158 5.842 18 C -0.227 4.227 19 C -0.033 4.033 20 O -0.521 6.521 21 Si 0.651 3.349 22 C -0.043 4.043 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.377 0.623 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.185 0.815 36 H 0.130 0.870 37 H 0.379 0.621 38 H -0.240 1.240 39 H -0.232 1.232 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 3.639 2.821 5.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.830 5.830 3 C 0.042 3.958 4 H 0.117 0.883 5 C -0.160 4.160 6 C -0.191 4.191 7 C 0.044 3.956 8 H 0.075 0.925 9 O -0.369 6.369 10 C -0.150 4.150 11 C -0.165 4.165 12 S 2.790 3.210 13 O -0.942 6.942 14 O -0.939 6.939 15 C -0.786 4.786 16 C -0.224 4.224 17 S 0.422 5.578 18 C -0.345 4.345 19 C -0.145 4.145 20 O -0.328 6.328 21 Si 0.549 3.451 22 C -0.072 4.072 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.224 0.776 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.202 0.798 36 H 0.147 0.853 37 H 0.227 0.773 38 H -0.164 1.164 39 H -0.155 1.155 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.934 2.064 4.629 5.856 hybrid contribution 1.010 0.400 -1.781 2.086 sum -1.925 2.463 2.849 4.229 Atomic orbital electron populations 1.21519 0.77874 1.03376 1.02760 1.57514 1.15492 1.20794 1.89187 1.21035 0.96268 0.82550 0.95951 0.88254 1.21753 1.01721 0.95284 0.97258 1.22256 1.01467 0.96791 0.98593 1.21799 0.82171 0.96811 0.94849 0.92515 1.86509 1.23118 1.77768 1.49533 1.21535 1.00293 0.95701 0.97454 1.21836 1.02289 0.95373 0.97023 1.01885 0.73278 0.72449 0.73355 1.93599 1.66078 1.58659 1.75848 1.93588 1.40100 1.84292 1.75890 1.30152 1.04155 1.15770 1.28526 1.25898 1.02093 0.97388 0.97037 1.84379 1.14335 1.48474 1.10662 1.25011 1.01825 1.07572 1.00061 1.24408 0.82415 1.05163 1.02534 1.86642 1.32598 1.27873 1.85679 0.95342 0.90127 0.82212 0.77396 1.19587 0.96145 0.99109 0.92315 0.91903 0.91117 0.90142 0.91404 0.90432 0.91090 0.90526 0.77585 0.90700 0.90337 0.90075 0.91513 0.79816 0.85281 0.77302 1.16386 1.15547 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.16 9.35 59.85 0.56 0.40 16 2 N -0.99 0.22 3.07 -114.61 -0.35 -0.14 16 3 C 0.15 -0.09 2.51 -67.93 -0.17 -0.26 16 4 H 0.10 -0.02 6.91 -51.93 -0.36 -0.38 16 5 C -0.12 0.11 5.06 -26.73 -0.14 -0.02 16 6 C -0.15 0.30 5.64 -26.73 -0.15 0.15 16 7 C 0.10 -0.19 3.77 -26.73 -0.10 -0.29 16 8 H 0.06 -0.13 8.14 -51.93 -0.42 -0.56 16 9 O -0.56 0.63 11.97 -35.23 -0.42 0.21 16 10 C -0.11 0.19 5.66 -26.73 -0.15 0.04 16 11 C -0.13 0.18 5.04 -26.73 -0.13 0.04 16 12 S 2.70 5.84 5.70 -107.50 -0.61 5.23 16 13 O -0.95 -4.29 16.71 -57.17 -0.96 -5.25 16 14 O -0.95 -4.60 16.19 -57.17 -0.93 -5.52 16 15 C -0.69 -0.61 5.89 -41.21 -0.24 -0.85 16 16 C -0.09 0.03 10.70 29.04 0.31 0.34 16 17 S 0.16 -0.16 20.58 -107.50 -2.21 -2.37 16 18 C -0.23 0.03 5.72 -36.00 -0.21 -0.18 16 19 C -0.03 0.03 2.96 36.00 0.11 0.13 16 20 O -0.52 -0.43 12.86 -35.23 -0.45 -0.88 16 21 Si 0.65 -0.91 30.97 -169.99 -5.26 -6.17 16 22 C -0.04 -0.04 9.56 -41.20 -0.39 -0.43 16 23 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 24 H 0.07 -0.19 7.79 -51.93 -0.40 -0.59 16 25 H 0.08 -0.23 6.42 -51.93 -0.33 -0.56 16 26 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 27 H 0.08 -0.08 7.21 -51.93 -0.37 -0.45 16 28 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 29 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 30 H 0.38 -1.63 9.08 45.56 0.41 -1.21 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 32 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 33 H 0.08 -0.06 6.20 -51.93 -0.32 -0.38 16 34 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 35 H 0.18 -0.43 8.00 -52.48 -0.42 -0.85 16 36 H 0.13 -0.26 7.96 -51.93 -0.41 -0.67 16 37 H 0.38 -0.70 8.70 45.56 0.40 -0.30 16 38 H -0.24 -0.11 7.11 56.52 0.40 0.30 16 39 H -0.23 -0.30 7.11 56.52 0.40 0.10 16 40 H 0.16 0.12 7.96 -52.49 -0.42 -0.30 16 LS Contribution 345.50 15.07 5.21 5.21 Total: 0.00 -8.80 345.50 -11.51 -20.31 By element: Atomic # 1 Polarization: -4.89 SS G_CDS: -4.81 Total: -9.70 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -0.71 Total: -0.93 kcal Atomic # 7 Polarization: 0.22 SS G_CDS: -0.35 Total: -0.14 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -2.76 Total: -11.44 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: -5.26 Total: -6.17 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -2.83 Total: 2.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -8.80 -11.51 -20.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.789 kcal (2) G-P(sol) polarization free energy of solvation -8.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds