Wall clock time and date at job start Mon Mar 8 2021 11:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 120.00157 * 2 1 4 4 H 1.08993 * 109.47378 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47050 * 300.00785 * 3 2 1 6 6 C 1.52997 * 109.46991 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47131 * 299.99311 * 6 5 3 8 8 H 1.09000 * 109.47054 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.47379 * 300.00404 * 7 6 5 10 10 C 1.53002 * 109.46972 * 60.00459 * 7 6 5 11 11 C 1.52997 * 109.46817 * 299.99733 * 10 7 6 12 12 S 1.65604 * 120.00348 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.39826 * 23.53643 * 12 2 1 14 14 O 1.42096 * 106.40403 * 156.45884 * 12 2 1 15 15 C 1.76198 * 107.21445 * 269.99913 * 12 2 1 16 16 C 1.33386 * 122.54383 * 90.02372 * 15 12 2 17 17 S 1.75879 * 109.59851 * 180.02562 * 16 15 12 18 18 C 1.75886 * 90.97045 * 359.97438 * 17 16 15 19 19 C 1.50696 * 125.20362 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47165 * 119.97688 * 19 18 17 21 21 Si 1.86300 * 109.47438 * 359.97438 * 19 18 17 22 22 C 1.33397 * 109.59169 * 359.73167 * 18 17 16 23 23 H 1.08997 * 109.47263 * 89.99773 * 1 2 3 24 24 H 1.09003 * 109.46653 * 209.99645 * 1 2 3 25 25 H 1.08997 * 109.47041 * 329.99779 * 1 2 3 26 26 H 1.09002 * 109.46719 * 299.99449 * 5 3 2 27 27 H 1.08993 * 109.47839 * 59.99291 * 5 3 2 28 28 H 1.09001 * 109.47289 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.47611 * 59.99933 * 6 5 3 30 30 H 0.96708 * 113.99549 * 299.99481 * 9 7 6 31 31 H 1.09002 * 109.47070 * 179.97438 * 10 7 6 32 32 H 1.08996 * 109.47407 * 59.99513 * 10 7 6 33 33 H 1.09001 * 109.47502 * 300.00518 * 11 10 7 34 34 H 1.09001 * 109.47289 * 180.02562 * 11 10 7 35 35 H 1.08005 * 125.20067 * 359.97438 * 16 15 12 36 36 H 1.09000 * 109.47220 * 239.97660 * 19 18 17 37 37 H 0.96699 * 114.00218 * 299.99920 * 20 19 18 38 38 H 1.48500 * 109.99972 * 58.67694 * 21 19 18 39 39 H 1.48495 * 110.00152 * 179.97438 * 21 19 18 40 40 H 1.07998 * 122.53840 * 180.24171 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2691 1.0696 0.0005 5 6 1.8278 2.0711 -1.2491 6 6 2.5923 3.3964 -1.2488 7 6 2.2222 4.1984 0.0004 8 1 2.7665 5.1427 0.0004 9 8 0.8172 4.4590 0.0002 10 6 2.5919 3.3960 1.2496 11 6 1.8274 2.0708 1.2493 12 16 2.2931 -1.4341 -0.0006 13 8 1.4114 -2.4063 -0.5455 14 8 3.5760 -1.1565 -0.5450 15 6 2.5539 -1.8864 1.6822 16 6 1.6866 -2.6333 2.3671 17 16 2.2810 -2.8755 4.0046 18 6 3.7169 -1.9213 3.6565 19 6 4.8257 -1.6314 4.6351 20 8 6.0569 -2.1494 4.1271 21 14 4.4391 -2.4391 6.2688 22 6 3.6775 -1.4988 2.3918 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 2.0911 1.4996 -2.1392 27 1 0.7562 2.2703 -1.2492 28 1 2.3293 3.9678 -2.1389 29 1 3.6641 3.1976 -1.2487 30 1 0.5112 4.9652 -0.7648 31 1 2.3286 3.9676 2.1397 32 1 3.6636 3.1972 1.2498 33 1 0.7556 2.2695 1.2491 34 1 2.0904 1.4993 2.1395 35 1 0.7604 -3.0281 1.9762 36 1 4.9147 -0.5540 4.7745 37 1 6.0501 -3.1048 3.9785 38 1 4.2836 -3.9046 6.0866 39 1 5.5253 -2.1611 7.2424 40 1 4.4607 -0.8964 1.9559 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15557740_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:30 Heat of formation + Delta-G solvation = -118.105884 kcal Electronic energy + Delta-G solvation = -26019.922040 eV Core-core repulsion = 22248.010643 eV Total energy + Delta-G solvation = -3771.911396 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.40747 -39.53961 -38.50548 -37.68219 -37.46645 -37.07640 -34.55405 -31.87302 -31.75361 -29.89687 -27.30891 -27.12730 -24.93980 -23.66212 -23.02488 -21.37474 -20.57855 -19.84060 -19.21158 -18.71713 -17.99821 -17.76415 -17.55976 -17.30498 -16.44261 -16.43750 -15.75251 -15.58448 -15.51467 -15.24746 -14.84809 -14.34957 -14.28244 -14.24006 -14.13289 -13.87608 -13.68781 -13.46192 -13.39114 -13.15335 -13.10884 -12.99829 -12.97832 -12.59076 -12.52472 -12.38314 -12.19358 -12.01583 -11.62646 -11.36391 -11.15052 -10.87234 -10.65955 -10.23736 -10.01179 -9.82101 -5.12175 -0.86872 -0.49766 0.32715 0.57094 0.92238 1.18233 1.48814 1.83503 1.92980 2.61614 3.09165 3.26619 3.45270 3.57175 3.59076 3.77831 3.87781 3.97678 3.99708 4.16174 4.22413 4.27491 4.44795 4.45662 4.46039 4.56873 4.60240 4.67351 4.71008 4.81390 4.87868 4.93090 5.01739 5.04622 5.05219 5.12534 5.25606 5.27705 5.35222 5.53344 5.58633 6.32730 6.96634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.987 5.987 3 C 0.145 3.855 4 H 0.092 0.908 5 C -0.121 4.121 6 C -0.150 4.150 7 C 0.104 3.896 8 H 0.064 0.936 9 O -0.578 6.578 10 C -0.116 4.116 11 C -0.119 4.119 12 S 2.712 3.288 13 O -0.980 6.980 14 O -0.983 6.983 15 C -0.694 4.694 16 C -0.088 4.088 17 S 0.192 5.808 18 C -0.230 4.230 19 C -0.042 4.042 20 O -0.541 6.541 21 Si 0.724 3.276 22 C -0.056 4.056 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.390 0.610 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.202 0.798 36 H 0.141 0.859 37 H 0.388 0.612 38 H -0.262 1.262 39 H -0.271 1.271 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 4.023 3.625 6.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.826 5.826 3 C 0.039 3.961 4 H 0.110 0.890 5 C -0.160 4.160 6 C -0.188 4.188 7 C 0.045 3.955 8 H 0.082 0.918 9 O -0.386 6.386 10 C -0.154 4.154 11 C -0.158 4.158 12 S 2.803 3.197 13 O -0.970 6.970 14 O -0.973 6.973 15 C -0.795 4.795 16 C -0.227 4.227 17 S 0.456 5.544 18 C -0.348 4.348 19 C -0.153 4.153 20 O -0.349 6.349 21 Si 0.626 3.374 22 C -0.085 4.085 23 H 0.080 0.920 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.239 0.761 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.219 0.781 36 H 0.159 0.841 37 H 0.237 0.763 38 H -0.187 1.187 39 H -0.196 1.196 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.772 2.462 5.388 7.023 hybrid contribution 1.269 0.271 -1.979 2.366 sum -2.503 2.733 3.409 5.035 Atomic orbital electron populations 1.21719 0.76774 1.04601 1.03170 1.57331 1.16067 1.20007 1.89165 1.21112 0.95892 0.82377 0.96673 0.89039 1.21754 1.02039 0.95679 0.96556 1.22246 1.01232 0.96245 0.99112 1.21798 0.82073 0.97026 0.94596 0.91824 1.86474 1.23406 1.78161 1.50552 1.21591 1.00721 0.95479 0.97589 1.21767 1.02036 0.95425 0.96593 1.01241 0.72373 0.72461 0.73654 1.93554 1.66514 1.59936 1.76996 1.93537 1.41767 1.84827 1.77192 1.29869 1.04890 1.17066 1.27669 1.26218 1.02485 0.96558 0.97487 1.84265 1.13147 1.47336 1.09620 1.25124 1.02414 1.07400 0.99828 1.24667 0.81799 1.06165 1.02651 1.86613 1.33469 1.28900 1.85925 0.94525 0.88258 0.79902 0.74761 1.19611 0.96268 0.99790 0.92870 0.91970 0.90040 0.88785 0.92519 0.90176 0.90149 0.90608 0.76122 0.90836 0.89679 0.90430 0.91160 0.78054 0.84117 0.76251 1.18716 1.19635 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.28 9.35 127.77 1.19 0.91 16 2 N -0.99 -0.27 3.07 -516.51 -1.59 -1.86 16 3 C 0.14 -0.07 2.51 44.99 0.11 0.04 16 4 H 0.09 0.10 6.91 -2.39 -0.02 0.08 16 5 C -0.12 0.16 5.06 30.59 0.15 0.31 16 6 C -0.15 0.59 5.64 30.59 0.17 0.76 16 7 C 0.10 -0.41 3.77 30.59 0.12 -0.29 16 8 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 9 O -0.58 1.58 11.97 -148.98 -1.78 -0.20 16 10 C -0.12 0.40 5.66 30.59 0.17 0.57 16 11 C -0.12 0.32 5.04 30.60 0.15 0.48 16 12 S 2.71 15.01 5.70 -56.49 -0.32 14.69 16 13 O -0.98 -9.89 16.71 -128.00 -2.14 -12.03 16 14 O -0.98 -11.44 16.19 -128.00 -2.07 -13.51 16 15 C -0.69 -1.52 5.89 21.22 0.12 -1.40 16 16 C -0.09 0.11 10.70 66.72 0.71 0.82 16 17 S 0.19 -0.58 20.58 -56.49 -1.16 -1.74 16 18 C -0.23 0.11 5.72 24.59 0.14 0.25 16 19 C -0.04 0.07 2.96 71.23 0.21 0.28 16 20 O -0.54 -1.04 12.86 -148.98 -1.92 -2.95 16 21 Si 0.72 -2.27 30.97 68.60 2.12 -0.15 16 22 C -0.06 -0.13 9.56 21.22 0.20 0.07 16 23 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 24 H 0.08 -0.46 7.79 -2.39 -0.02 -0.47 16 25 H 0.09 -0.57 6.42 -2.39 -0.02 -0.59 16 26 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.08 -0.15 7.21 -2.39 -0.02 -0.17 16 28 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.39 -3.58 9.08 -74.05 -0.67 -4.25 16 31 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.08 -0.14 6.20 -2.39 -0.01 -0.15 16 34 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.20 -1.11 8.00 -2.91 -0.02 -1.13 16 36 H 0.14 -0.62 7.96 -2.39 -0.02 -0.64 16 37 H 0.39 -1.29 8.70 -74.06 -0.64 -1.93 16 38 H -0.26 -0.11 7.11 99.48 0.71 0.60 16 39 H -0.27 -0.88 7.11 99.48 0.71 -0.17 16 40 H 0.15 0.43 7.96 -2.91 -0.02 0.41 16 Total: 0.00 -20.02 345.50 -5.59 -25.61 By element: Atomic # 1 Polarization: -10.47 SS G_CDS: -0.21 Total: -10.68 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 3.47 Total: 2.82 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -1.59 Total: -1.86 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -7.91 Total: -28.69 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: 2.12 Total: -0.15 kcal Atomic # 16 Polarization: 14.43 SS G_CDS: -1.48 Total: 12.94 kcal Total: -20.02 -5.59 -25.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.494 kcal (2) G-P(sol) polarization free energy of solvation -20.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds