Wall clock time and date at job start Mon Mar 8 2021 11:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33385 * 125.20418 * 2 1 4 4 C 1.50704 * 122.53974 * 359.97438 * 3 2 1 5 5 O 1.42906 * 109.46753 * 307.38688 * 4 3 2 6 6 Si 1.86292 * 109.47112 * 67.38718 * 4 3 2 7 7 C 1.38425 * 114.92167 * 180.25017 * 3 2 1 8 8 S 1.76202 * 122.53883 * 179.73138 * 7 3 2 9 9 O 1.42102 * 106.40097 * 193.20136 * 8 7 3 10 10 O 1.42094 * 106.40291 * 326.12465 * 8 7 3 11 11 N 1.65599 * 107.21954 * 79.66530 * 8 7 3 12 12 C 1.46500 * 120.00116 * 270.00066 * 11 8 7 13 13 C 1.46503 * 120.00075 * 89.99880 * 11 8 7 14 14 H 1.08999 * 109.47103 * 359.97438 * 13 11 8 15 15 C 1.53002 * 109.47031 * 120.00219 * 13 11 8 16 16 C 1.52999 * 109.46966 * 180.02562 * 15 13 11 17 17 C 1.52996 * 109.47216 * 299.99872 * 16 15 13 18 18 H 1.08999 * 109.47430 * 180.02562 * 17 16 15 19 19 O 1.42907 * 109.47215 * 300.00241 * 17 16 15 20 20 C 1.52997 * 109.47338 * 60.00012 * 17 16 15 21 21 C 1.52999 * 109.46957 * 300.00146 * 20 17 16 22 22 C 1.33387 * 114.91870 * 359.49156 * 7 3 2 23 23 C 1.50703 * 125.20101 * 180.20858 * 22 7 3 24 24 S 1.75882 * 109.59626 * 0.47911 * 22 7 3 25 25 H 1.08999 * 109.47035 * 89.97545 * 1 2 3 26 26 H 1.08996 * 109.47040 * 209.97738 * 1 2 3 27 27 H 1.08998 * 109.46706 * 329.97774 * 1 2 3 28 28 H 1.08997 * 109.46977 * 187.39220 * 4 3 2 29 29 H 0.96697 * 114.00193 * 304.19866 * 5 4 3 30 30 H 1.48500 * 110.00455 * 289.13341 * 6 4 3 31 31 H 1.48498 * 110.00163 * 50.45584 * 6 4 3 32 32 H 1.09003 * 109.47229 * 89.99985 * 12 11 8 33 33 H 1.09001 * 109.47202 * 209.99825 * 12 11 8 34 34 H 1.08997 * 109.46877 * 329.99951 * 12 11 8 35 35 H 1.08999 * 109.46782 * 299.99743 * 15 13 11 36 36 H 1.08999 * 109.47371 * 59.99927 * 15 13 11 37 37 H 1.08996 * 109.47137 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.47235 * 59.99722 * 16 15 13 39 39 H 0.96702 * 113.99371 * 299.99673 * 19 17 16 40 40 H 1.09001 * 109.47776 * 180.02562 * 20 17 16 41 41 H 1.08999 * 109.47090 * 60.00164 * 20 17 16 42 42 H 1.08999 * 109.47268 * 299.99373 * 21 20 17 43 43 H 1.09009 * 109.47019 * 179.97438 * 21 20 17 44 44 H 1.09000 * 109.47082 * 180.33639 * 23 22 7 45 45 H 1.09000 * 109.47045 * 300.33701 * 23 22 7 46 46 H 1.08997 * 109.47304 * 60.33453 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4847 -0.0006 5 8 0.7681 2.6153 -1.0715 6 14 0.8444 2.8040 1.6204 7 6 3.6380 0.8428 -0.0055 8 16 4.8356 2.1352 -0.0135 9 8 6.0805 1.5268 -0.3290 10 8 4.2749 3.1972 -0.7730 11 7 4.9676 2.6909 1.5409 12 6 4.1094 3.7846 2.0031 13 6 5.9424 2.0888 2.4539 14 1 6.4841 1.2971 1.9363 15 6 6.9291 3.1592 2.9246 16 6 7.9476 2.5303 3.8775 17 6 7.2185 1.9415 5.0869 18 1 7.9441 1.4938 5.7660 19 8 6.5079 2.9787 5.7661 20 6 6.2318 0.8711 4.6163 21 6 5.2134 1.5001 3.6633 22 6 3.9751 -0.4478 0.0008 23 6 5.3861 -0.9771 0.0013 24 16 2.5210 -1.4372 0.0006 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 2.5108 3.2068 -0.1327 29 1 1.1319 2.3997 -1.9411 30 1 -0.4074 2.0088 1.6961 31 1 1.7406 2.4491 2.7500 32 1 3.1907 3.3736 2.4216 33 1 4.6324 4.3582 2.7684 34 1 3.8667 4.4357 1.1634 35 1 7.4488 3.5783 2.0630 36 1 6.3871 3.9506 3.4423 37 1 8.6508 3.2927 4.2125 38 1 8.4895 1.7391 3.3595 39 1 7.0720 3.6930 6.0929 40 1 5.7121 0.4519 5.4778 41 1 6.7738 0.0800 4.0982 42 1 4.6713 2.2912 4.1814 43 1 4.5106 0.7374 3.3276 44 1 5.3653 -2.0669 0.0011 45 1 5.9071 -0.6234 -0.8884 46 1 5.9064 -0.6238 0.8915 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15557740_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:35 Heat of formation + Delta-G solvation = -113.354663 kcal Electronic energy + Delta-G solvation = -31604.244375 eV Core-core repulsion = 27521.463769 eV Total energy + Delta-G solvation = -4082.780606 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.110 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.57495 -40.27699 -38.56409 -37.61727 -36.98647 -36.92501 -34.71258 -34.20217 -31.93365 -30.93134 -30.05476 -28.05102 -27.30327 -25.92897 -23.85786 -23.28838 -23.04642 -20.78130 -20.52683 -19.71291 -19.16302 -18.59926 -18.11186 -17.75491 -17.48285 -17.00849 -16.54664 -16.35331 -15.76927 -15.62645 -15.52619 -15.25075 -15.18778 -14.86086 -14.54306 -14.38209 -14.36185 -14.30987 -13.95936 -13.71852 -13.52866 -13.44899 -13.34020 -13.27281 -13.22732 -13.05800 -13.02318 -12.73342 -12.64097 -12.53332 -12.30599 -12.20391 -11.75574 -11.62162 -11.46599 -11.41251 -11.26184 -10.83476 -10.77914 -10.11020 -9.96020 -9.50741 -4.92870 -0.79762 -0.44366 0.34999 0.67032 0.83305 1.34083 1.59286 1.89694 1.92891 2.64243 3.14310 3.22253 3.42653 3.47100 3.60348 3.65132 3.79967 3.81979 3.86750 3.98591 4.03603 4.10677 4.14524 4.21322 4.26414 4.28688 4.37799 4.45148 4.46394 4.54092 4.55415 4.58227 4.60780 4.66069 4.76214 4.85691 4.86782 4.89965 4.93849 4.99736 5.05125 5.09284 5.13303 5.19488 5.21454 5.40064 5.48386 6.59612 6.63936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.169 4.169 3 C -0.079 4.079 4 C -0.095 4.095 5 O -0.529 6.529 6 Si 0.729 3.271 7 C -0.687 4.687 8 S 2.700 3.300 9 O -0.949 6.949 10 O -0.945 6.945 11 N -0.991 5.991 12 C 0.060 3.940 13 C 0.148 3.852 14 H 0.098 0.902 15 C -0.122 4.122 16 C -0.152 4.152 17 C 0.103 3.897 18 H 0.057 0.943 19 O -0.563 6.563 20 C -0.112 4.112 21 C -0.127 4.127 22 C -0.050 4.050 23 C -0.109 4.109 24 S 0.153 5.847 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.369 0.631 30 H -0.240 1.240 31 H -0.238 1.238 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.377 0.623 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -0.057 3.898 4.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.287 4.287 3 C -0.089 4.089 4 C -0.205 4.205 5 O -0.334 6.334 6 Si 0.628 3.372 7 C -0.786 4.786 8 S 2.790 3.210 9 O -0.939 6.939 10 O -0.936 6.936 11 N -0.829 5.829 12 C -0.084 4.084 13 C 0.043 3.957 14 H 0.116 0.884 15 C -0.161 4.161 16 C -0.190 4.190 17 C 0.044 3.956 18 H 0.075 0.925 19 O -0.369 6.369 20 C -0.150 4.150 21 C -0.166 4.166 22 C -0.172 4.172 23 C -0.168 4.168 24 S 0.419 5.581 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.216 0.784 30 H -0.166 1.166 31 H -0.163 1.163 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.224 0.776 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.128 0.872 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.439 -1.904 4.224 4.654 hybrid contribution 1.090 0.005 -0.739 1.317 sum 1.529 -1.898 3.485 4.253 Atomic orbital electron populations 1.20728 0.86855 1.03848 1.04004 1.24482 1.00543 0.94828 1.08855 1.18591 0.90243 0.97011 1.03060 1.25717 0.99876 0.92394 1.02555 1.86646 1.37922 1.91426 1.17356 0.94187 0.80177 0.90587 0.72235 1.29628 1.12014 1.13598 1.23354 1.01837 0.73349 0.73287 0.72572 1.93575 1.40393 1.77841 1.82104 1.93510 1.79014 1.53278 1.67748 1.57449 1.48237 1.46304 1.30891 1.22049 0.94524 0.89373 1.02472 1.21036 0.88438 0.95719 0.90506 0.88396 1.21771 0.96567 0.98422 0.99344 1.22250 0.98131 1.01464 0.97182 1.21790 0.93202 0.88480 0.92126 0.92463 1.86521 1.38589 1.35363 1.76396 1.21538 0.97197 0.96735 0.99511 1.21848 0.98181 1.01056 0.95507 1.24599 1.00700 0.94952 0.96901 1.20925 0.88152 1.01761 1.05949 1.84424 0.95345 1.08781 1.69540 0.89723 0.91342 0.88956 0.87642 0.78352 1.16571 1.16308 0.92167 0.89227 0.89306 0.91223 0.90247 0.90966 0.90550 0.77551 0.90733 0.90419 0.89960 0.91970 0.90288 0.87231 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.13 9.17 36.01 0.33 0.20 16 2 C -0.17 -0.40 6.10 -36.00 -0.22 -0.62 16 3 C -0.08 -0.21 4.25 -106.25 -0.45 -0.67 16 4 C -0.09 -0.20 2.48 36.01 0.09 -0.11 16 5 O -0.53 -1.10 11.55 -35.23 -0.41 -1.51 16 6 Si 0.73 0.42 28.51 -169.99 -4.85 -4.42 16 7 C -0.69 -1.75 5.87 -41.21 -0.24 -1.99 16 8 S 2.70 7.24 5.38 -107.50 -0.58 6.67 16 9 O -0.95 -3.61 13.29 -57.17 -0.76 -4.37 16 10 O -0.95 -4.29 13.66 -57.17 -0.78 -5.07 16 11 N -0.99 -0.50 3.07 -114.61 -0.35 -0.85 16 12 C 0.06 -0.05 8.61 59.85 0.52 0.47 16 13 C 0.15 -0.06 2.51 -67.93 -0.17 -0.23 16 14 H 0.10 -0.06 6.39 -51.93 -0.33 -0.39 16 15 C -0.12 0.15 5.04 -26.73 -0.13 0.01 16 16 C -0.15 0.36 5.64 -26.73 -0.15 0.21 16 17 C 0.10 -0.19 3.77 -26.73 -0.10 -0.29 16 18 H 0.06 -0.14 8.14 -51.93 -0.42 -0.56 16 19 O -0.56 0.59 11.97 -35.23 -0.42 0.17 16 20 C -0.11 0.15 5.66 -26.73 -0.15 0.00 16 21 C -0.13 0.06 5.06 -26.73 -0.14 -0.07 16 22 C -0.05 -0.08 6.50 -36.00 -0.23 -0.32 16 23 C -0.11 0.01 8.64 36.01 0.31 0.32 16 24 S 0.15 0.19 23.31 -107.50 -2.51 -2.31 16 25 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 26 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 27 H 0.09 0.19 3.74 -51.93 -0.19 -0.01 16 28 H 0.11 0.22 3.39 -51.93 -0.18 0.05 16 29 H 0.37 0.10 9.03 45.56 0.41 0.51 16 30 H -0.24 -0.52 5.50 56.52 0.31 -0.20 16 31 H -0.24 -0.23 5.89 56.52 0.33 0.10 16 32 H 0.06 -0.06 3.93 -51.93 -0.20 -0.27 16 33 H 0.09 -0.21 6.43 -51.93 -0.33 -0.54 16 34 H 0.09 -0.11 6.63 -51.93 -0.34 -0.46 16 35 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 36 H 0.08 -0.11 6.20 -51.93 -0.32 -0.43 16 37 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 38 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 39 H 0.38 -1.66 9.08 45.56 0.41 -1.25 16 40 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 41 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 42 H 0.08 0.04 7.21 -51.93 -0.37 -0.34 16 43 H 0.06 -0.01 8.14 -51.92 -0.42 -0.43 16 44 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 45 H 0.11 0.07 7.01 -51.93 -0.36 -0.30 16 46 H 0.09 -0.10 7.36 -51.93 -0.38 -0.49 16 LS Contribution 359.27 15.07 5.41 5.41 Total: 0.00 -6.80 359.27 -11.77 -18.56 By element: Atomic # 1 Polarization: -3.40 SS G_CDS: -5.79 Total: -9.19 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.75 Total: -3.09 kcal Atomic # 7 Polarization: -0.50 SS G_CDS: -0.35 Total: -0.85 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -2.37 Total: -10.78 kcal Atomic # 14 Polarization: 0.42 SS G_CDS: -4.85 Total: -4.42 kcal Atomic # 16 Polarization: 7.44 SS G_CDS: -3.08 Total: 4.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -6.80 -11.77 -18.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.790 kcal (2) G-P(sol) polarization free energy of solvation -6.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds