Wall clock time and date at job start Mon Mar 8 2021 11:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33385 * 125.20418 * 2 1 4 4 C 1.50704 * 122.53974 * 359.97438 * 3 2 1 5 5 O 1.42906 * 109.46753 * 307.38688 * 4 3 2 6 6 Si 1.86292 * 109.47112 * 67.38718 * 4 3 2 7 7 C 1.38425 * 114.92167 * 180.25017 * 3 2 1 8 8 S 1.76202 * 122.53883 * 179.73138 * 7 3 2 9 9 O 1.42102 * 106.40097 * 193.20136 * 8 7 3 10 10 O 1.42094 * 106.40291 * 326.12465 * 8 7 3 11 11 N 1.65599 * 107.21954 * 79.66530 * 8 7 3 12 12 C 1.46500 * 120.00116 * 270.00066 * 11 8 7 13 13 C 1.46503 * 120.00075 * 89.99880 * 11 8 7 14 14 H 1.08999 * 109.47103 * 359.97438 * 13 11 8 15 15 C 1.53002 * 109.47031 * 120.00219 * 13 11 8 16 16 C 1.52999 * 109.46966 * 180.02562 * 15 13 11 17 17 C 1.52996 * 109.47216 * 299.99872 * 16 15 13 18 18 H 1.08999 * 109.47430 * 180.02562 * 17 16 15 19 19 O 1.42907 * 109.47215 * 300.00241 * 17 16 15 20 20 C 1.52997 * 109.47338 * 60.00012 * 17 16 15 21 21 C 1.52999 * 109.46957 * 300.00146 * 20 17 16 22 22 C 1.33387 * 114.91870 * 359.49156 * 7 3 2 23 23 C 1.50703 * 125.20101 * 180.20858 * 22 7 3 24 24 S 1.75882 * 109.59626 * 0.47911 * 22 7 3 25 25 H 1.08999 * 109.47035 * 89.97545 * 1 2 3 26 26 H 1.08996 * 109.47040 * 209.97738 * 1 2 3 27 27 H 1.08998 * 109.46706 * 329.97774 * 1 2 3 28 28 H 1.08997 * 109.46977 * 187.39220 * 4 3 2 29 29 H 0.96697 * 114.00193 * 304.19866 * 5 4 3 30 30 H 1.48500 * 110.00455 * 289.13341 * 6 4 3 31 31 H 1.48498 * 110.00163 * 50.45584 * 6 4 3 32 32 H 1.09003 * 109.47229 * 89.99985 * 12 11 8 33 33 H 1.09001 * 109.47202 * 209.99825 * 12 11 8 34 34 H 1.08997 * 109.46877 * 329.99951 * 12 11 8 35 35 H 1.08999 * 109.46782 * 299.99743 * 15 13 11 36 36 H 1.08999 * 109.47371 * 59.99927 * 15 13 11 37 37 H 1.08996 * 109.47137 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.47235 * 59.99722 * 16 15 13 39 39 H 0.96702 * 113.99371 * 299.99673 * 19 17 16 40 40 H 1.09001 * 109.47776 * 180.02562 * 20 17 16 41 41 H 1.08999 * 109.47090 * 60.00164 * 20 17 16 42 42 H 1.08999 * 109.47268 * 299.99373 * 21 20 17 43 43 H 1.09009 * 109.47019 * 179.97438 * 21 20 17 44 44 H 1.09000 * 109.47082 * 180.33639 * 23 22 7 45 45 H 1.09000 * 109.47045 * 300.33701 * 23 22 7 46 46 H 1.08997 * 109.47304 * 60.33453 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4847 -0.0006 5 8 0.7681 2.6153 -1.0715 6 14 0.8444 2.8040 1.6204 7 6 3.6380 0.8428 -0.0055 8 16 4.8356 2.1352 -0.0135 9 8 6.0805 1.5268 -0.3290 10 8 4.2749 3.1972 -0.7730 11 7 4.9676 2.6909 1.5409 12 6 4.1094 3.7846 2.0031 13 6 5.9424 2.0888 2.4539 14 1 6.4841 1.2971 1.9363 15 6 6.9291 3.1592 2.9246 16 6 7.9476 2.5303 3.8775 17 6 7.2185 1.9415 5.0869 18 1 7.9441 1.4938 5.7660 19 8 6.5079 2.9787 5.7661 20 6 6.2318 0.8711 4.6163 21 6 5.2134 1.5001 3.6633 22 6 3.9751 -0.4478 0.0008 23 6 5.3861 -0.9771 0.0013 24 16 2.5210 -1.4372 0.0006 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 2.5108 3.2068 -0.1327 29 1 1.1319 2.3997 -1.9411 30 1 -0.4074 2.0088 1.6961 31 1 1.7406 2.4491 2.7500 32 1 3.1907 3.3736 2.4216 33 1 4.6324 4.3582 2.7684 34 1 3.8667 4.4357 1.1634 35 1 7.4488 3.5783 2.0630 36 1 6.3871 3.9506 3.4423 37 1 8.6508 3.2927 4.2125 38 1 8.4895 1.7391 3.3595 39 1 7.0720 3.6930 6.0929 40 1 5.7121 0.4519 5.4778 41 1 6.7738 0.0800 4.0982 42 1 4.6713 2.2912 4.1814 43 1 4.5106 0.7374 3.3276 44 1 5.3653 -2.0669 0.0011 45 1 5.9071 -0.6234 -0.8884 46 1 5.9064 -0.6238 0.8915 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15557740_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:33 Heat of formation + Delta-G solvation = -113.423414 kcal Electronic energy + Delta-G solvation = -31604.247356 eV Core-core repulsion = 27521.463769 eV Total energy + Delta-G solvation = -4082.783587 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.110 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.49068 -40.38279 -38.78460 -37.54716 -37.17692 -37.11474 -34.63104 -34.29234 -31.81034 -31.00182 -29.96465 -28.13686 -27.28313 -26.04501 -23.74421 -23.34221 -23.01573 -20.72332 -20.61812 -19.82623 -19.28088 -18.70678 -18.23801 -17.62033 -17.48237 -17.13457 -16.56323 -16.44660 -15.75844 -15.59696 -15.56783 -15.34764 -15.25284 -14.94692 -14.47102 -14.44428 -14.36819 -14.32567 -14.04288 -13.75417 -13.58664 -13.53865 -13.42822 -13.24017 -13.16622 -13.10241 -13.07705 -12.79455 -12.70691 -12.60369 -12.26247 -12.08445 -11.85003 -11.69330 -11.52645 -11.39715 -11.17228 -10.92184 -10.67578 -10.16539 -10.00876 -9.62465 -4.99167 -0.94521 -0.57435 0.24531 0.54347 0.69167 1.24813 1.51669 1.79987 1.84055 2.47584 3.00811 3.36010 3.41556 3.51410 3.53666 3.71227 3.75089 3.89735 3.92434 3.95164 4.05949 4.12832 4.16893 4.23000 4.35074 4.41015 4.46517 4.47829 4.49685 4.50856 4.54695 4.57472 4.66098 4.73332 4.81662 4.84944 4.91550 4.98372 5.00852 5.02485 5.07847 5.10218 5.21065 5.23562 5.30289 5.46123 5.52605 6.52116 6.95914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.185 4.185 3 C -0.089 4.089 4 C -0.108 4.108 5 O -0.535 6.535 6 Si 0.776 3.224 7 C -0.700 4.700 8 S 2.706 3.294 9 O -0.964 6.964 10 O -0.969 6.969 11 N -0.987 5.987 12 C 0.051 3.949 13 C 0.145 3.855 14 H 0.099 0.901 15 C -0.122 4.122 16 C -0.148 4.148 17 C 0.104 3.896 18 H 0.066 0.934 19 O -0.580 6.580 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.053 4.053 23 C -0.114 4.114 24 S 0.173 5.827 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.375 0.625 30 H -0.261 1.261 31 H -0.243 1.243 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.390 0.610 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 -0.384 4.647 5.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.303 4.303 3 C -0.099 4.099 4 C -0.217 4.217 5 O -0.341 6.341 6 Si 0.676 3.324 7 C -0.799 4.799 8 S 2.796 3.204 9 O -0.954 6.954 10 O -0.959 6.959 11 N -0.826 5.826 12 C -0.093 4.093 13 C 0.040 3.960 14 H 0.117 0.883 15 C -0.161 4.161 16 C -0.186 4.186 17 C 0.045 3.955 18 H 0.084 0.916 19 O -0.388 6.388 20 C -0.153 4.153 21 C -0.161 4.161 22 C -0.174 4.174 23 C -0.173 4.173 24 S 0.439 5.561 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.121 0.879 29 H 0.223 0.777 30 H -0.188 1.188 31 H -0.169 1.169 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.240 0.760 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.036 -2.214 4.958 5.528 hybrid contribution 0.908 0.080 -0.968 1.330 sum 1.944 -2.133 3.990 4.924 Atomic orbital electron populations 1.20754 0.86407 1.03968 1.04387 1.24684 1.01143 0.95344 1.09125 1.18714 0.90451 0.97400 1.03351 1.25950 1.00126 0.92261 1.03388 1.86609 1.38231 1.91470 1.17823 0.93695 0.78243 0.89680 0.70814 1.29616 1.11940 1.13937 1.24416 1.01471 0.72974 0.72958 0.72968 1.93548 1.41090 1.78053 1.82740 1.93477 1.79345 1.54186 1.68917 1.57343 1.48571 1.46461 1.30237 1.22229 0.94715 0.89251 1.03068 1.21166 0.88417 0.96119 0.90274 0.88279 1.21778 0.96613 0.98254 0.99436 1.22236 0.97885 1.01829 0.96687 1.21803 0.93052 0.88262 0.92388 0.91620 1.86490 1.39658 1.36066 1.76590 1.21595 0.97237 0.97323 0.99149 1.21779 0.98249 1.00558 0.95484 1.24886 1.01662 0.94871 0.96017 1.21050 0.87124 1.03038 1.06064 1.84286 0.94711 1.07978 1.69109 0.89198 0.90354 0.89724 0.87890 0.77688 1.18828 1.16910 0.91995 0.87612 0.89050 0.91726 0.90065 0.89836 0.90172 0.76023 0.91375 0.89160 0.90946 0.92592 0.88360 0.87940 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.30 9.17 71.24 0.65 0.35 16 2 C -0.19 -0.96 6.10 24.59 0.15 -0.81 16 3 C -0.09 -0.55 4.25 -20.92 -0.09 -0.64 16 4 C -0.11 -0.55 2.48 71.24 0.18 -0.38 16 5 O -0.54 -2.76 11.55 -148.98 -1.72 -4.48 16 6 Si 0.78 1.40 28.51 68.60 1.96 3.36 16 7 C -0.70 -4.08 5.87 21.22 0.12 -3.95 16 8 S 2.71 16.96 5.38 -56.49 -0.30 16.66 16 9 O -0.96 -8.08 13.29 -128.00 -1.70 -9.78 16 10 O -0.97 -10.04 13.66 -128.00 -1.75 -11.78 16 11 N -0.99 -1.49 3.07 -516.50 -1.59 -3.08 16 12 C 0.05 -0.06 8.61 127.77 1.10 1.04 16 13 C 0.15 -0.11 2.51 44.99 0.11 0.00 16 14 H 0.10 -0.11 6.39 -2.39 -0.02 -0.13 16 15 C -0.12 0.33 5.04 30.59 0.15 0.49 16 16 C -0.15 0.83 5.64 30.59 0.17 1.00 16 17 C 0.10 -0.46 3.77 30.59 0.12 -0.35 16 18 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 19 O -0.58 1.56 11.97 -148.98 -1.78 -0.22 16 20 C -0.11 0.36 5.66 30.59 0.17 0.53 16 21 C -0.12 0.11 5.06 30.59 0.15 0.26 16 22 C -0.05 -0.19 6.50 24.59 0.16 -0.03 16 23 C -0.11 0.04 8.64 71.24 0.62 0.65 16 24 S 0.17 0.43 23.31 -56.49 -1.32 -0.89 16 25 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.08 0.41 3.74 -2.39 -0.01 0.40 16 28 H 0.10 0.56 3.39 -2.39 -0.01 0.55 16 29 H 0.37 0.67 9.03 -74.06 -0.67 0.00 16 30 H -0.26 -1.36 5.50 99.48 0.55 -0.82 16 31 H -0.24 -0.58 5.89 99.48 0.59 0.01 16 32 H 0.06 -0.10 3.93 -2.39 -0.01 -0.11 16 33 H 0.11 -0.49 6.43 -2.39 -0.02 -0.51 16 34 H 0.09 -0.16 6.63 -2.39 -0.02 -0.18 16 35 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.08 -0.26 6.20 -2.39 -0.01 -0.27 16 37 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.39 -3.72 9.08 -74.06 -0.67 -4.40 16 40 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.07 0.09 7.21 -2.39 -0.02 0.07 16 43 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 44 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.10 0.16 7.01 -2.39 -0.02 0.14 16 46 H 0.10 -0.26 7.36 -2.39 -0.02 -0.27 16 Total: 0.00 -15.28 359.27 -4.97 -20.25 By element: Atomic # 1 Polarization: -7.66 SS G_CDS: -0.54 Total: -8.20 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 3.77 Total: -1.83 kcal Atomic # 7 Polarization: -1.49 SS G_CDS: -1.59 Total: -3.08 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -6.95 Total: -26.26 kcal Atomic # 14 Polarization: 1.40 SS G_CDS: 1.96 Total: 3.36 kcal Atomic # 16 Polarization: 17.39 SS G_CDS: -1.62 Total: 15.77 kcal Total: -15.28 -4.97 -20.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.172 kcal (2) G-P(sol) polarization free energy of solvation -15.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds