Wall clock time and date at job start Mon Mar 8 2021 11:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 120.00417 * 2 1 4 4 H 1.08994 * 109.47180 * 115.24263 * 3 2 1 5 5 C 1.52998 * 109.47291 * 235.24287 * 3 2 1 6 6 C 1.53003 * 109.46917 * 59.99717 * 5 3 2 7 7 C 1.52999 * 109.47056 * 60.00095 * 6 5 3 8 8 H 1.09002 * 109.47487 * 59.99922 * 7 6 5 9 9 O 1.42900 * 109.47383 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47179 * 299.99744 * 7 6 5 11 11 C 1.52999 * 109.47236 * 60.00041 * 10 7 6 12 12 S 1.65607 * 119.99994 * 180.02562 * 2 1 3 13 13 O 1.42094 * 106.40324 * 204.64858 * 12 2 1 14 14 O 1.42103 * 106.40024 * 337.56467 * 12 2 1 15 15 C 1.76196 * 107.22035 * 91.10519 * 12 2 1 16 16 C 1.38217 * 119.99882 * 269.94692 * 15 12 2 17 17 C 1.50698 * 120.00277 * 359.97438 * 16 15 12 18 18 O 1.42898 * 109.47155 * 74.35174 * 17 16 15 19 19 Si 1.86297 * 109.47176 * 194.35334 * 17 16 15 20 20 C 1.38257 * 119.99550 * 179.97438 * 16 15 12 21 21 C 1.38211 * 120.00512 * 0.02562 * 20 16 15 22 22 C 1.38257 * 119.99922 * 359.97438 * 21 20 16 23 23 C 1.38217 * 119.99529 * 359.75305 * 22 21 20 24 24 H 1.09006 * 109.46710 * 94.05891 * 1 2 3 25 25 H 1.08997 * 109.47168 * 334.06494 * 1 2 3 26 26 H 1.08997 * 109.47198 * 214.05376 * 1 2 3 27 27 H 1.09002 * 109.47056 * 179.97438 * 5 3 2 28 28 H 1.08998 * 109.47531 * 300.00231 * 5 3 2 29 29 H 1.09003 * 109.47316 * 179.97438 * 6 5 3 30 30 H 1.08997 * 109.47706 * 299.99941 * 6 5 3 31 31 H 0.96697 * 114.00637 * 179.97438 * 9 7 6 32 32 H 1.09000 * 109.47116 * 179.97438 * 10 7 6 33 33 H 1.08996 * 109.47296 * 300.00069 * 10 7 6 34 34 H 1.08998 * 109.47146 * 179.97438 * 11 10 7 35 35 H 1.08996 * 109.46955 * 59.99819 * 11 10 7 36 36 H 1.09003 * 109.46936 * 314.35130 * 17 16 15 37 37 H 0.96697 * 113.99987 * 65.13531 * 18 17 16 38 38 H 1.48504 * 109.99787 * 58.68248 * 19 17 16 39 39 H 1.48500 * 109.99913 * 179.97438 * 19 17 16 40 40 H 1.08006 * 119.99709 * 179.97438 * 20 16 15 41 41 H 1.08000 * 120.00447 * 179.97438 * 21 20 16 42 42 H 1.07997 * 120.00331 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.99619 * 180.27738 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 2.7588 1.3642 0.9295 5 6 3.1648 1.2992 -1.1851 6 6 2.3770 1.1651 -2.4899 7 6 1.3871 2.3255 -2.6095 8 1 1.9321 3.2695 -2.6095 9 8 0.6517 2.2007 -3.8283 10 6 0.4199 2.2951 -1.4244 11 6 1.2076 2.4291 -0.1196 12 16 2.2930 -1.4342 -0.0006 13 8 3.5666 -1.1625 0.5680 14 8 1.4024 -2.4119 0.5192 15 6 2.5820 -1.8690 -1.6835 16 6 1.6594 -2.6388 -2.3666 17 6 0.4066 -3.1068 -1.6719 18 8 -0.4982 -2.0097 -1.5312 19 14 -0.3982 -4.4501 -2.6810 20 6 1.8859 -2.9794 -3.6872 21 6 3.0351 -2.5507 -4.3243 22 6 3.9579 -1.7807 -3.6410 23 6 3.7288 -1.4354 -2.3224 24 1 -0.3633 -0.0727 -1.0252 25 1 -0.3633 0.9241 0.4494 26 1 -0.3633 -0.8514 0.5754 27 1 3.7095 2.2433 -1.1853 28 1 3.8700 0.4724 -1.1000 29 1 3.0660 1.1872 -3.3342 30 1 1.8320 0.2211 -2.4899 31 1 0.0036 2.9040 -3.9705 32 1 -0.2850 3.1221 -1.5094 33 1 -0.1251 1.3512 -1.4244 34 1 0.5185 2.4079 0.7246 35 1 1.7527 3.3730 -0.1196 36 1 0.6616 -3.4961 -0.6862 37 1 -0.8297 -1.6632 -2.3709 38 1 0.5443 -5.5836 -2.8613 39 1 -1.6345 -4.9207 -2.0062 40 1 1.1652 -3.5813 -4.2209 41 1 3.2122 -2.8172 -5.3558 42 1 4.8561 -1.4460 -4.1386 43 1 4.4475 -0.8301 -1.7900 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15557740_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:39 Heat of formation + Delta-G solvation = -83.271932 kcal Electronic energy + Delta-G solvation = -29868.323061 eV Core-core repulsion = 26008.769932 eV Total energy + Delta-G solvation = -3859.553129 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.122 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.14009 -40.51244 -38.59789 -37.60638 -37.31549 -36.77121 -34.32940 -32.91199 -32.78267 -31.85257 -30.23425 -26.92056 -26.68861 -24.41486 -24.04308 -23.03903 -22.64393 -21.30374 -19.94395 -18.92378 -18.47653 -18.08175 -17.95583 -17.36807 -17.17199 -16.67649 -16.42373 -15.96945 -15.82929 -15.46886 -15.43264 -15.15105 -14.99719 -14.83181 -14.18981 -14.08383 -13.90642 -13.74386 -13.61060 -13.35410 -13.17212 -13.05572 -12.96047 -12.76921 -12.74406 -12.43130 -12.21201 -12.14283 -12.01587 -11.94296 -11.75272 -11.24678 -11.00256 -10.80575 -10.41926 -10.40136 -10.03121 -9.82846 -5.02437 -0.60108 -0.23912 0.13112 1.27120 1.65416 1.91743 2.02092 2.40168 2.78146 3.11740 3.26608 3.42632 3.46558 3.52506 3.58528 3.74649 3.83867 3.85962 4.00751 4.08101 4.14305 4.16531 4.22107 4.33209 4.36091 4.43031 4.53304 4.55156 4.63615 4.69224 4.79018 4.84631 4.90438 4.95481 4.98950 5.01714 5.03060 5.06941 5.15675 5.18839 5.24489 5.27596 5.40053 5.68946 5.70605 6.49838 6.66525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.986 5.986 3 C 0.154 3.846 4 H 0.086 0.914 5 C -0.161 4.161 6 C -0.117 4.117 7 C 0.109 3.891 8 H 0.051 0.949 9 O -0.567 6.567 10 C -0.178 4.178 11 C -0.117 4.117 12 S 2.694 3.306 13 O -0.960 6.960 14 O -0.948 6.948 15 C -0.659 4.659 16 C -0.011 4.011 17 C -0.120 4.120 18 O -0.524 6.524 19 Si 0.678 3.322 20 C -0.136 4.136 21 C -0.055 4.055 22 C -0.136 4.136 23 C -0.020 4.020 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.377 0.623 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.172 0.828 37 H 0.372 0.628 38 H -0.258 1.258 39 H -0.249 1.249 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 4.561 -5.012 6.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.825 5.825 3 C 0.048 3.952 4 H 0.104 0.896 5 C -0.199 4.199 6 C -0.154 4.154 7 C 0.050 3.950 8 H 0.069 0.931 9 O -0.373 6.373 10 C -0.215 4.215 11 C -0.155 4.155 12 S 2.786 3.214 13 O -0.950 6.950 14 O -0.938 6.938 15 C -0.746 4.746 16 C -0.012 4.012 17 C -0.230 4.230 18 O -0.329 6.329 19 Si 0.579 3.421 20 C -0.154 4.154 21 C -0.073 4.073 22 C -0.154 4.154 23 C -0.039 4.039 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.224 0.776 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.188 0.812 37 H 0.220 0.780 38 H -0.183 1.183 39 H -0.174 1.174 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.271 2.622 -3.715 4.721 hybrid contribution 0.194 0.782 -0.422 0.910 sum -1.077 3.405 -4.137 5.465 Atomic orbital electron populations 1.22030 0.77461 1.03471 1.02982 1.57325 1.15749 1.20006 1.89433 1.20937 0.92529 0.83269 0.98467 0.89611 1.22425 0.98333 1.04741 0.94401 1.21606 0.97623 0.99197 0.96976 1.21736 0.91906 0.97940 0.83397 0.93125 1.86513 1.56242 1.53981 1.40564 1.22856 0.99093 1.04885 0.94694 1.21721 0.98195 0.97409 0.98219 1.01926 0.72904 0.72610 0.73989 1.93572 1.41152 1.84684 1.75634 1.93428 1.65183 1.57677 1.77523 1.30756 1.03712 1.13293 1.26789 1.20057 0.94573 0.92788 0.93825 1.26063 0.89217 0.98510 1.09258 1.86725 1.62446 1.49229 1.34524 0.95465 0.81094 0.78810 0.86689 1.21159 0.98593 1.01538 0.94103 1.21473 0.92554 0.93288 0.99981 1.21334 1.00147 0.99297 0.94662 1.21104 0.93937 0.94040 0.94769 0.90595 0.90613 0.89855 0.89265 0.90105 0.91187 0.90169 0.77561 0.91678 0.88141 0.90325 0.90319 0.81227 0.78037 1.18267 1.17414 0.84620 0.84725 0.84790 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.08 6.83 59.85 0.41 0.33 16 2 N -0.99 -0.24 2.54 -114.61 -0.29 -0.53 16 3 C 0.15 -0.13 2.86 -67.93 -0.19 -0.32 16 4 H 0.09 -0.05 8.13 -51.93 -0.42 -0.47 16 5 C -0.16 0.18 4.82 -26.73 -0.13 0.05 16 6 C -0.12 0.10 3.88 -26.73 -0.10 0.00 16 7 C 0.11 -0.16 3.47 -26.73 -0.09 -0.26 16 8 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 9 O -0.57 0.36 13.32 -35.23 -0.47 -0.11 16 10 C -0.18 0.47 4.99 -26.73 -0.13 0.34 16 11 C -0.12 0.30 4.91 -26.73 -0.13 0.17 16 12 S 2.69 8.07 4.75 -107.50 -0.51 7.56 16 13 O -0.96 -5.15 15.52 -57.17 -0.89 -6.03 16 14 O -0.95 -4.85 12.37 -62.46 -0.77 -5.62 16 15 C -0.66 -0.99 3.94 -39.58 -0.16 -1.14 16 16 C -0.01 -0.01 5.29 -104.62 -0.55 -0.56 16 17 C -0.12 -0.09 1.74 36.00 0.06 -0.03 16 18 O -0.52 0.53 8.05 -44.85 -0.36 0.17 16 19 Si 0.68 -0.26 29.82 -169.99 -5.07 -5.33 16 20 C -0.14 0.12 8.66 -39.58 -0.34 -0.22 16 21 C -0.05 0.07 10.05 -39.58 -0.40 -0.33 16 22 C -0.14 0.11 10.05 -39.58 -0.40 -0.29 16 23 C -0.02 -0.01 6.53 -39.58 -0.26 -0.27 16 24 H 0.08 -0.17 4.31 -51.93 -0.22 -0.39 16 25 H 0.08 -0.18 5.33 -51.93 -0.28 -0.46 16 26 H 0.08 0.05 6.71 -51.93 -0.35 -0.30 16 27 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.08 -0.03 3.22 -51.93 -0.17 -0.20 16 29 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 30 H 0.08 -0.02 5.24 -51.93 -0.27 -0.29 16 31 H 0.38 -1.57 9.08 45.56 0.41 -1.15 16 32 H 0.06 -0.22 8.14 -51.93 -0.42 -0.64 16 33 H 0.10 -0.25 3.84 -51.93 -0.20 -0.45 16 34 H 0.08 -0.23 6.71 -51.93 -0.35 -0.58 16 35 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 36 H 0.17 0.56 4.93 -52.11 -0.26 0.30 16 37 H 0.37 -1.81 8.51 45.56 0.39 -1.42 16 38 H -0.26 -0.60 7.11 56.52 0.40 -0.20 16 39 H -0.25 -0.68 7.11 56.52 0.40 -0.28 16 40 H 0.14 -0.44 5.11 -52.48 -0.27 -0.71 16 41 H 0.13 -0.49 8.06 -52.49 -0.42 -0.92 16 42 H 0.13 -0.38 8.06 -52.49 -0.42 -0.80 16 43 H 0.14 -0.04 5.46 -52.48 -0.29 -0.32 16 LS Contribution 311.99 15.07 4.70 4.70 Total: 0.00 -8.77 311.99 -10.50 -19.27 By element: Atomic # 1 Polarization: -7.14 SS G_CDS: -4.42 Total: -11.56 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.42 Total: -2.52 kcal Atomic # 7 Polarization: -0.24 SS G_CDS: -0.29 Total: -0.53 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -2.49 Total: -11.59 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: -5.07 Total: -5.33 kcal Atomic # 16 Polarization: 8.07 SS G_CDS: -0.51 Total: 7.56 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -8.77 -10.50 -19.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.999 kcal (2) G-P(sol) polarization free energy of solvation -8.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds