Wall clock time and date at job start Mon Mar 8 2021 11:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 120.00417 * 2 1 4 4 H 1.08994 * 109.47180 * 115.24263 * 3 2 1 5 5 C 1.52998 * 109.47291 * 235.24287 * 3 2 1 6 6 C 1.53003 * 109.46917 * 59.99717 * 5 3 2 7 7 C 1.52999 * 109.47056 * 60.00095 * 6 5 3 8 8 H 1.09002 * 109.47487 * 59.99922 * 7 6 5 9 9 O 1.42900 * 109.47383 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47179 * 299.99744 * 7 6 5 11 11 C 1.52999 * 109.47236 * 60.00041 * 10 7 6 12 12 S 1.65607 * 119.99994 * 180.02562 * 2 1 3 13 13 O 1.42094 * 106.40324 * 204.64858 * 12 2 1 14 14 O 1.42103 * 106.40024 * 337.56467 * 12 2 1 15 15 C 1.76196 * 107.22035 * 91.10519 * 12 2 1 16 16 C 1.38217 * 119.99882 * 269.94692 * 15 12 2 17 17 C 1.50698 * 120.00277 * 359.97438 * 16 15 12 18 18 O 1.42898 * 109.47155 * 74.35174 * 17 16 15 19 19 Si 1.86297 * 109.47176 * 194.35334 * 17 16 15 20 20 C 1.38257 * 119.99550 * 179.97438 * 16 15 12 21 21 C 1.38211 * 120.00512 * 0.02562 * 20 16 15 22 22 C 1.38257 * 119.99922 * 359.97438 * 21 20 16 23 23 C 1.38217 * 119.99529 * 359.75305 * 22 21 20 24 24 H 1.09006 * 109.46710 * 94.05891 * 1 2 3 25 25 H 1.08997 * 109.47168 * 334.06494 * 1 2 3 26 26 H 1.08997 * 109.47198 * 214.05376 * 1 2 3 27 27 H 1.09002 * 109.47056 * 179.97438 * 5 3 2 28 28 H 1.08998 * 109.47531 * 300.00231 * 5 3 2 29 29 H 1.09003 * 109.47316 * 179.97438 * 6 5 3 30 30 H 1.08997 * 109.47706 * 299.99941 * 6 5 3 31 31 H 0.96697 * 114.00637 * 179.97438 * 9 7 6 32 32 H 1.09000 * 109.47116 * 179.97438 * 10 7 6 33 33 H 1.08996 * 109.47296 * 300.00069 * 10 7 6 34 34 H 1.08998 * 109.47146 * 179.97438 * 11 10 7 35 35 H 1.08996 * 109.46955 * 59.99819 * 11 10 7 36 36 H 1.09003 * 109.46936 * 314.35130 * 17 16 15 37 37 H 0.96697 * 113.99987 * 65.13531 * 18 17 16 38 38 H 1.48504 * 109.99787 * 58.68248 * 19 17 16 39 39 H 1.48500 * 109.99913 * 179.97438 * 19 17 16 40 40 H 1.08006 * 119.99709 * 179.97438 * 20 16 15 41 41 H 1.08000 * 120.00447 * 179.97438 * 21 20 16 42 42 H 1.07997 * 120.00331 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.99619 * 180.27738 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 2.7588 1.3642 0.9295 5 6 3.1648 1.2992 -1.1851 6 6 2.3770 1.1651 -2.4899 7 6 1.3871 2.3255 -2.6095 8 1 1.9321 3.2695 -2.6095 9 8 0.6517 2.2007 -3.8283 10 6 0.4199 2.2951 -1.4244 11 6 1.2076 2.4291 -0.1196 12 16 2.2930 -1.4342 -0.0006 13 8 3.5666 -1.1625 0.5680 14 8 1.4024 -2.4119 0.5192 15 6 2.5820 -1.8690 -1.6835 16 6 1.6594 -2.6388 -2.3666 17 6 0.4066 -3.1068 -1.6719 18 8 -0.4982 -2.0097 -1.5312 19 14 -0.3982 -4.4501 -2.6810 20 6 1.8859 -2.9794 -3.6872 21 6 3.0351 -2.5507 -4.3243 22 6 3.9579 -1.7807 -3.6410 23 6 3.7288 -1.4354 -2.3224 24 1 -0.3633 -0.0727 -1.0252 25 1 -0.3633 0.9241 0.4494 26 1 -0.3633 -0.8514 0.5754 27 1 3.7095 2.2433 -1.1853 28 1 3.8700 0.4724 -1.1000 29 1 3.0660 1.1872 -3.3342 30 1 1.8320 0.2211 -2.4899 31 1 0.0036 2.9040 -3.9705 32 1 -0.2850 3.1221 -1.5094 33 1 -0.1251 1.3512 -1.4244 34 1 0.5185 2.4079 0.7246 35 1 1.7527 3.3730 -0.1196 36 1 0.6616 -3.4961 -0.6862 37 1 -0.8297 -1.6632 -2.3709 38 1 0.5443 -5.5836 -2.8613 39 1 -1.6345 -4.9207 -2.0062 40 1 1.1652 -3.5813 -4.2209 41 1 3.2122 -2.8172 -5.3558 42 1 4.8561 -1.4460 -4.1386 43 1 4.4475 -0.8301 -1.7900 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15557740_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:38 Heat of formation + Delta-G solvation = -86.036863 kcal Electronic energy + Delta-G solvation = -29868.442958 eV Core-core repulsion = 26008.769932 eV Total energy + Delta-G solvation = -3859.673026 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.122 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.05598 -40.44553 -38.78345 -37.55140 -37.30131 -37.04854 -34.27370 -32.83644 -32.71638 -31.74578 -30.13041 -26.90051 -26.64822 -24.38297 -23.90311 -22.95646 -22.59560 -21.23425 -20.02070 -18.96688 -18.46916 -18.08346 -17.90055 -17.31471 -17.20154 -16.67294 -16.40454 -15.93258 -15.77830 -15.51359 -15.38401 -15.09273 -14.89419 -14.76481 -14.27503 -14.05484 -13.90586 -13.71642 -13.55205 -13.35213 -13.32772 -13.07489 -12.97871 -12.77401 -12.75265 -12.37334 -12.20104 -12.17018 -12.04024 -11.84776 -11.62946 -11.27113 -10.86544 -10.65046 -10.41997 -10.35578 -9.98515 -9.79840 -5.04908 -0.72204 -0.25570 0.18673 1.24677 1.61032 1.85418 1.97005 2.41358 2.66850 3.14567 3.30904 3.47358 3.53594 3.60717 3.69889 3.83562 3.95370 4.02019 4.14441 4.22879 4.25330 4.29938 4.33591 4.43940 4.50559 4.56123 4.58793 4.67318 4.70279 4.79088 4.88311 4.92789 4.98226 5.03506 5.08628 5.14275 5.15649 5.21639 5.23683 5.29300 5.33080 5.40263 5.51990 5.75847 5.79287 6.76719 6.97096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.980 5.980 3 C 0.147 3.853 4 H 0.077 0.923 5 C -0.161 4.161 6 C -0.114 4.114 7 C 0.109 3.891 8 H 0.055 0.945 9 O -0.584 6.584 10 C -0.174 4.174 11 C -0.113 4.113 12 S 2.691 3.309 13 O -0.994 6.994 14 O -0.978 6.978 15 C -0.666 4.666 16 C -0.021 4.021 17 C -0.130 4.130 18 O -0.529 6.529 19 Si 0.780 3.220 20 C -0.139 4.139 21 C -0.053 4.053 22 C -0.139 4.139 23 C -0.031 4.031 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.391 0.609 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.142 0.858 37 H 0.390 0.610 38 H -0.293 1.293 39 H -0.295 1.295 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.155 0.845 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.167 5.650 -6.942 9.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.820 5.820 3 C 0.042 3.958 4 H 0.095 0.905 5 C -0.199 4.199 6 C -0.151 4.151 7 C 0.051 3.949 8 H 0.073 0.927 9 O -0.392 6.392 10 C -0.211 4.211 11 C -0.151 4.151 12 S 2.787 3.213 13 O -0.985 6.985 14 O -0.968 6.968 15 C -0.755 4.755 16 C -0.023 4.023 17 C -0.239 4.239 18 O -0.337 6.337 19 Si 0.685 3.315 20 C -0.157 4.157 21 C -0.071 4.071 22 C -0.157 4.157 23 C -0.050 4.050 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.241 0.759 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.158 0.842 37 H 0.241 0.759 38 H -0.220 1.220 39 H -0.223 1.223 40 H 0.177 0.823 41 H 0.182 0.818 42 H 0.172 0.828 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.703 3.759 -5.623 6.975 hybrid contribution 0.326 0.450 0.170 0.581 sum -1.377 4.209 -5.453 7.025 Atomic orbital electron populations 1.22152 0.76679 1.03522 1.03761 1.57135 1.16063 1.19403 1.89421 1.21092 0.93120 0.83307 0.98304 0.90469 1.22426 0.98207 1.04993 0.94303 1.21555 0.97647 0.99349 0.96576 1.21734 0.91986 0.97620 0.83594 0.92712 1.86472 1.56846 1.55024 1.40902 1.22808 0.98957 1.05280 0.94011 1.21730 0.97948 0.96896 0.98568 1.01606 0.72166 0.72881 0.74682 1.93518 1.42680 1.85235 1.77041 1.93411 1.65605 1.58982 1.78835 1.30437 1.04793 1.14667 1.25624 1.20129 0.94391 0.93129 0.94640 1.26081 0.90056 0.99677 1.08122 1.86692 1.62112 1.48803 1.36132 0.94487 0.76659 0.75784 0.84533 1.21452 0.99390 1.01406 0.93444 1.21870 0.91786 0.92162 1.01236 1.21640 1.01046 0.98994 0.94062 1.21225 0.93701 0.94423 0.95614 0.89205 0.88825 0.91751 0.87965 0.91180 0.91819 0.90836 0.75924 0.90346 0.88415 0.89768 0.89097 0.84154 0.75943 1.22006 1.22282 0.82258 0.81818 0.82768 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.10 6.83 127.77 0.87 0.78 16 2 N -0.98 -1.74 2.54 -516.51 -1.31 -3.05 16 3 C 0.15 -0.14 2.86 44.99 0.13 -0.01 16 4 H 0.08 0.03 8.13 -2.39 -0.02 0.01 16 5 C -0.16 0.27 4.82 30.59 0.15 0.41 16 6 C -0.11 0.20 3.88 30.59 0.12 0.32 16 7 C 0.11 -0.43 3.47 30.59 0.11 -0.33 16 8 H 0.05 -0.26 8.14 -2.39 -0.02 -0.28 16 9 O -0.58 1.40 13.32 -148.98 -1.98 -0.58 16 10 C -0.17 1.12 4.99 30.59 0.15 1.27 16 11 C -0.11 0.66 4.91 30.59 0.15 0.81 16 12 S 2.69 22.49 4.75 -56.49 -0.27 22.22 16 13 O -0.99 -13.51 15.52 -128.00 -1.99 -15.49 16 14 O -0.98 -12.99 12.37 -122.94 -1.52 -14.51 16 15 C -0.67 -2.85 3.94 22.27 0.09 -2.76 16 16 C -0.02 -0.04 5.29 -19.87 -0.11 -0.14 16 17 C -0.13 -0.34 1.74 71.24 0.12 -0.22 16 18 O -0.53 0.72 8.05 -139.78 -1.13 -0.40 16 19 Si 0.78 -0.35 29.82 68.60 2.05 1.70 16 20 C -0.14 0.38 8.66 22.27 0.19 0.57 16 21 C -0.05 0.23 10.05 22.27 0.22 0.45 16 22 C -0.14 0.33 10.05 22.27 0.22 0.55 16 23 C -0.03 -0.05 6.53 22.27 0.15 0.09 16 24 H 0.09 -0.39 4.31 -2.38 -0.01 -0.40 16 25 H 0.09 -0.47 5.33 -2.39 -0.01 -0.48 16 26 H 0.06 0.20 6.71 -2.39 -0.02 0.18 16 27 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H 0.07 0.05 3.22 -2.39 -0.01 0.05 16 29 H 0.06 -0.05 8.14 -2.39 -0.02 -0.06 16 30 H 0.07 -0.02 5.24 -2.39 -0.01 -0.04 16 31 H 0.39 -3.77 9.08 -74.06 -0.67 -4.44 16 32 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H 0.10 -0.58 3.84 -2.39 -0.01 -0.59 16 34 H 0.08 -0.57 6.71 -2.39 -0.02 -0.59 16 35 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 36 H 0.14 1.29 4.93 -5.25 -0.03 1.27 16 37 H 0.39 -3.98 8.51 -74.06 -0.63 -4.61 16 38 H -0.29 -1.53 7.11 99.48 0.71 -0.82 16 39 H -0.29 -2.03 7.11 99.48 0.71 -1.33 16 40 H 0.16 -1.33 5.11 -2.91 -0.01 -1.34 16 41 H 0.16 -1.69 8.06 -2.91 -0.02 -1.71 16 42 H 0.15 -1.08 8.06 -2.91 -0.02 -1.10 16 43 H 0.14 0.16 5.46 -2.91 -0.02 0.14 16 Total: 0.00 -22.61 311.99 -3.77 -26.39 By element: Atomic # 1 Polarization: -17.89 SS G_CDS: -0.19 Total: -18.08 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 2.57 Total: 1.81 kcal Atomic # 7 Polarization: -1.74 SS G_CDS: -1.31 Total: -3.05 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -6.62 Total: -30.99 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: 2.05 Total: 1.70 kcal Atomic # 16 Polarization: 22.49 SS G_CDS: -0.27 Total: 22.22 kcal Total: -22.61 -3.77 -26.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.647 kcal (2) G-P(sol) polarization free energy of solvation -22.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds