Wall clock time and date at job start Mon Mar 8 2021 13:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86296 * 109.46911 * 2 1 4 4 C 1.50696 * 109.47133 * 239.99911 * 2 1 3 5 5 C 1.38230 * 120.00309 * 300.00172 * 4 2 1 6 6 C 1.38235 * 120.00326 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 S 1.76199 * 120.00037 * 179.97438 * 7 6 5 9 9 O 1.42106 * 106.40265 * 203.53950 * 8 7 6 10 10 O 1.42097 * 106.40472 * 336.46722 * 8 7 6 11 11 N 1.65608 * 107.21829 * 90.00408 * 8 7 6 12 12 C 1.46505 * 119.99702 * 64.99552 * 11 8 7 13 13 H 1.08998 * 112.85335 * 15.33999 * 12 11 8 14 14 C 1.53782 * 113.60747 * 146.53291 * 12 11 8 15 15 C 1.53785 * 87.07831 * 139.98100 * 14 12 11 16 16 H 1.08997 * 113.61538 * 220.01183 * 15 14 12 17 17 N 1.46500 * 113.61330 * 89.19729 * 15 14 12 18 18 C 1.36889 * 126.39505 * 119.99948 * 17 15 14 19 19 C 1.34671 * 106.81731 * 180.02562 * 18 17 15 20 20 N 1.34138 * 108.02040 * 359.97438 * 19 18 17 21 21 C 1.30499 * 109.25476 * 359.73340 * 20 19 18 22 22 C 1.53779 * 113.61518 * 244.13939 * 12 11 8 23 23 C 1.38240 * 120.00061 * 0.07178 * 7 6 5 24 24 C 1.38234 * 120.00081 * 359.88514 * 23 7 6 25 25 H 0.96701 * 113.99690 * 59.99880 * 1 2 3 26 26 H 1.09000 * 109.46971 * 120.00131 * 2 1 3 27 27 H 1.48500 * 110.00162 * 60.00305 * 3 2 1 28 28 H 1.48501 * 109.99899 * 181.31579 * 3 2 1 29 29 H 1.08000 * 120.00376 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.00616 * 179.72578 * 6 5 4 31 31 H 0.96994 * 119.99823 * 245.00200 * 11 8 7 32 32 H 1.09006 * 113.61563 * 254.52708 * 14 12 11 33 33 H 1.09000 * 113.61598 * 25.43304 * 14 12 11 34 34 H 1.07996 * 126.59360 * 359.96624 * 18 17 15 35 35 H 1.07997 * 125.99081 * 180.02562 * 19 18 17 36 36 H 1.07995 * 125.65154 * 180.29006 * 21 20 19 37 37 H 1.09004 * 113.61123 * 334.57030 * 22 12 11 38 38 H 1.08999 * 113.61579 * 105.47527 * 22 12 11 39 39 H 1.08005 * 120.00084 * 180.02562 * 23 7 6 40 40 H 1.07999 * 120.00147 * 180.10835 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.5975 -2.0338 -1.4492 6 6 2.0578 -2.6853 -2.5782 7 6 2.8517 -2.0132 -3.4886 8 16 3.4391 -2.8438 -4.9272 9 8 4.6058 -2.1479 -5.3441 10 8 3.4292 -4.2314 -4.6216 11 7 2.3103 -2.6193 -6.1181 12 6 2.0519 -1.2742 -6.6382 13 1 2.8287 -0.5592 -6.3674 14 6 1.6870 -1.2512 -8.1319 15 6 0.6458 -0.1754 -7.7803 16 1 -0.2970 -0.2889 -8.3153 17 7 1.1714 1.1908 -7.8374 18 6 0.7187 2.2022 -8.6412 19 6 1.4790 3.2815 -8.3749 20 7 2.3712 2.9386 -7.4338 21 6 2.1889 1.6895 -7.1028 22 6 0.6262 -0.7696 -6.3602 23 6 3.1865 -0.6900 -3.2693 24 6 2.7254 -0.0382 -2.1408 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5139 0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5346 1.7703 -0.0320 29 1 0.9769 -2.5589 -0.7382 30 1 1.8006 -3.7206 -2.7469 31 1 1.8202 -3.3782 -6.4711 32 1 2.4909 -0.8880 -8.7723 33 1 1.2486 -2.1831 -8.4888 34 1 -0.0916 2.1454 -9.3528 35 1 1.3861 4.2530 -8.8374 36 1 2.7592 1.1440 -6.3655 37 1 -0.1029 -1.5697 -6.2317 38 1 0.5748 -0.0183 -5.5722 39 1 3.8064 -0.1647 -3.9809 40 1 2.9855 0.9960 -1.9704 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15608158_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:45 Heat of formation + Delta-G solvation = 32.300752 kcal Electronic energy + Delta-G solvation = -27230.226550 eV Core-core repulsion = 23334.374596 eV Total energy + Delta-G solvation = -3895.851954 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.29645 -40.83068 -40.34904 -38.34694 -37.85097 -36.97499 -35.10122 -33.14605 -32.54529 -32.33744 -30.27222 -27.40445 -27.21258 -26.22034 -24.23265 -23.12191 -22.65494 -22.23767 -21.38904 -20.65992 -19.42117 -18.72161 -18.37388 -18.21239 -17.69517 -17.01987 -16.61442 -16.30280 -16.24016 -15.97221 -15.85907 -15.69617 -15.46578 -14.94775 -14.85703 -14.61076 -14.40823 -14.11576 -13.98804 -13.96690 -13.85855 -13.80258 -13.22427 -13.16515 -12.87274 -12.77053 -12.61341 -12.48792 -12.04696 -12.00742 -11.87618 -10.92635 -10.88503 -10.74276 -10.59142 -10.43738 -10.28618 -9.49079 -5.18741 -0.85172 -0.48036 0.05201 1.02076 1.08455 1.48746 1.60110 1.71264 1.83571 2.20678 2.25176 2.59408 2.81663 2.98347 3.13384 3.20141 3.26577 3.32248 3.36762 3.53734 3.63388 3.68495 3.78751 3.87783 4.02338 4.11092 4.15598 4.23109 4.23369 4.26103 4.44174 4.45714 4.51200 4.55107 4.67268 4.75258 4.80301 4.84608 4.86370 5.11335 5.25158 5.55468 5.62834 5.78282 6.16500 6.32649 7.12388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.077 4.077 3 Si 0.689 3.311 4 C -0.061 4.061 5 C -0.113 4.113 6 C -0.016 4.016 7 C -0.674 4.674 8 S 2.690 3.310 9 O -0.950 6.950 10 O -0.952 6.952 11 N -1.102 6.102 12 C 0.119 3.881 13 H 0.119 0.881 14 C -0.147 4.147 15 C 0.107 3.893 16 H 0.121 0.879 17 N -0.445 5.445 18 C -0.050 4.050 19 C -0.028 4.028 20 N -0.488 5.488 21 C 0.174 3.826 22 C -0.158 4.158 23 C -0.017 4.017 24 C -0.137 4.137 25 H 0.380 0.620 26 H 0.121 0.879 27 H -0.250 1.250 28 H -0.254 1.254 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.423 0.577 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.199 0.801 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.144 0.856 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.481 0.183 -2.929 7.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.188 4.188 3 Si 0.590 3.410 4 C -0.062 4.062 5 C -0.132 4.132 6 C -0.035 4.035 7 C -0.761 4.761 8 S 2.780 3.220 9 O -0.940 6.940 10 O -0.943 6.943 11 N -0.860 5.860 12 C 0.011 3.989 13 H 0.137 0.863 14 C -0.187 4.187 15 C 0.002 3.998 16 H 0.139 0.861 17 N -0.128 5.128 18 C -0.182 4.182 19 C -0.176 4.176 20 N -0.205 5.205 21 C -0.108 4.108 22 C -0.198 4.198 23 C -0.037 4.037 24 C -0.155 4.155 25 H 0.228 0.772 26 H 0.138 0.862 27 H -0.175 1.175 28 H -0.179 1.179 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.258 0.742 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.193 0.807 35 H 0.188 0.812 36 H 0.216 0.784 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.162 0.838 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.461 0.540 -1.601 4.771 hybrid contribution -1.231 -1.117 0.135 1.668 sum -5.693 -0.577 -1.466 5.907 Atomic orbital electron populations 1.86542 1.16556 1.81634 1.49289 1.25223 0.85638 1.10598 0.97349 0.94682 0.81354 0.77307 0.87647 1.20759 0.94857 0.94951 0.95638 1.21189 1.00069 0.94032 0.97874 1.20987 0.91102 0.99444 0.91973 1.30951 1.15541 1.07324 1.22313 1.02080 0.73348 0.73528 0.73068 1.93632 1.44094 1.75318 1.80915 1.93629 1.86114 1.30262 1.84245 1.55529 1.61172 1.14712 1.54582 1.22623 0.97272 0.83515 0.95470 0.86316 1.23798 0.99263 0.99361 0.96318 1.22200 0.98748 0.79343 0.99482 0.86076 1.45296 1.27001 1.09618 1.30921 1.22779 1.04975 0.88702 1.01791 1.22390 0.95875 0.99464 0.99822 1.70354 1.24227 1.11255 1.14689 1.24973 0.93208 0.91934 1.00636 1.24019 0.98112 1.01653 0.96051 1.20901 0.94081 0.91940 0.96746 1.21187 0.99224 1.00202 0.94887 0.77234 0.86201 1.17502 1.17876 0.84462 0.83894 0.74173 0.89184 0.86969 0.80732 0.81159 0.78444 0.86840 0.89299 0.83821 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.70 12.77 -35.23 -0.45 0.25 16 2 C -0.08 0.12 2.82 36.00 0.10 0.22 16 3 Si 0.69 -1.33 29.79 -169.99 -5.06 -6.40 16 4 C -0.06 0.08 5.39 -104.63 -0.56 -0.48 16 5 C -0.11 0.11 9.61 -39.59 -0.38 -0.27 16 6 C -0.02 0.01 9.52 -39.58 -0.38 -0.36 16 7 C -0.67 0.57 5.95 -39.58 -0.24 0.34 16 8 S 2.69 -0.45 5.71 -107.50 -0.61 -1.06 16 9 O -0.95 -2.70 16.79 -57.17 -0.96 -3.66 16 10 O -0.95 -2.79 17.28 -57.17 -0.99 -3.78 16 11 N -1.10 4.22 5.79 -4.20 -0.02 4.19 16 12 C 0.12 -0.52 3.91 -67.12 -0.26 -0.78 16 13 H 0.12 -0.48 5.28 -51.93 -0.27 -0.76 16 14 C -0.15 0.71 7.57 -25.92 -0.20 0.52 16 15 C 0.11 -0.51 4.88 -67.03 -0.33 -0.84 16 16 H 0.12 -0.75 8.14 -51.93 -0.42 -1.18 16 17 N -0.44 0.82 2.94 -110.49 -0.33 0.50 16 18 C -0.05 0.05 11.58 -16.56 -0.19 -0.14 16 19 C -0.03 -0.03 11.87 -17.81 -0.21 -0.24 16 20 N -0.49 -1.42 11.25 -14.66 -0.16 -1.58 16 21 C 0.17 -0.01 11.18 -90.37 -1.01 -1.03 16 22 C -0.16 0.89 7.31 -25.83 -0.19 0.70 16 23 C -0.02 0.02 9.52 -39.58 -0.38 -0.35 16 24 C -0.14 0.23 8.67 -39.58 -0.34 -0.11 16 25 H 0.38 -1.98 8.70 45.56 0.40 -1.58 16 26 H 0.12 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 28 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 29 H 0.14 -0.24 8.06 -52.49 -0.42 -0.66 16 30 H 0.14 -0.29 7.61 -52.49 -0.40 -0.69 16 31 H 0.42 -2.45 8.93 -34.47 -0.31 -2.76 16 32 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 33 H 0.11 -0.73 8.14 -51.93 -0.42 -1.15 16 34 H 0.18 -0.68 8.06 -52.49 -0.42 -1.10 16 35 H 0.17 -0.11 8.06 -52.49 -0.42 -0.53 16 36 H 0.20 -0.55 5.88 -52.49 -0.31 -0.85 16 37 H 0.11 -0.78 8.14 -51.93 -0.42 -1.20 16 38 H 0.09 -0.46 8.02 -51.93 -0.42 -0.88 16 39 H 0.14 -0.42 7.62 -52.48 -0.40 -0.82 16 40 H 0.14 -0.47 4.88 -52.49 -0.26 -0.72 16 LS Contribution 347.96 15.07 5.24 5.24 Total: 0.00 -12.52 347.96 -12.45 -24.96 By element: Atomic # 1 Polarization: -11.30 SS G_CDS: -4.54 Total: -15.84 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -4.56 Total: -2.82 kcal Atomic # 7 Polarization: 3.62 SS G_CDS: -0.51 Total: 3.11 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -2.40 Total: -7.19 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: -5.06 Total: -6.40 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -0.61 Total: -1.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -12.52 -12.45 -24.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15608158_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.266 kcal (2) G-P(sol) polarization free energy of solvation -12.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds