Wall clock time and date at job start Mon Mar 8 2021 13:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86296 * 109.46911 * 2 1 4 4 C 1.50696 * 109.47133 * 239.99911 * 2 1 3 5 5 C 1.38230 * 120.00309 * 300.00172 * 4 2 1 6 6 C 1.38235 * 120.00326 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 S 1.76199 * 120.00037 * 179.97438 * 7 6 5 9 9 O 1.42106 * 106.40265 * 203.53950 * 8 7 6 10 10 O 1.42097 * 106.40472 * 336.46722 * 8 7 6 11 11 N 1.65608 * 107.21829 * 90.00408 * 8 7 6 12 12 C 1.46505 * 119.99702 * 64.99552 * 11 8 7 13 13 H 1.08998 * 112.85335 * 15.33999 * 12 11 8 14 14 C 1.53782 * 113.60747 * 146.53291 * 12 11 8 15 15 C 1.53785 * 87.07831 * 139.98100 * 14 12 11 16 16 H 1.08997 * 113.61538 * 220.01183 * 15 14 12 17 17 N 1.46500 * 113.61330 * 89.19729 * 15 14 12 18 18 C 1.36889 * 126.39505 * 119.99948 * 17 15 14 19 19 C 1.34671 * 106.81731 * 180.02562 * 18 17 15 20 20 N 1.34138 * 108.02040 * 359.97438 * 19 18 17 21 21 C 1.30499 * 109.25476 * 359.73340 * 20 19 18 22 22 C 1.53779 * 113.61518 * 244.13939 * 12 11 8 23 23 C 1.38240 * 120.00061 * 0.07178 * 7 6 5 24 24 C 1.38234 * 120.00081 * 359.88514 * 23 7 6 25 25 H 0.96701 * 113.99690 * 59.99880 * 1 2 3 26 26 H 1.09000 * 109.46971 * 120.00131 * 2 1 3 27 27 H 1.48500 * 110.00162 * 60.00305 * 3 2 1 28 28 H 1.48501 * 109.99899 * 181.31579 * 3 2 1 29 29 H 1.08000 * 120.00376 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.00616 * 179.72578 * 6 5 4 31 31 H 0.96994 * 119.99823 * 245.00200 * 11 8 7 32 32 H 1.09006 * 113.61563 * 254.52708 * 14 12 11 33 33 H 1.09000 * 113.61598 * 25.43304 * 14 12 11 34 34 H 1.07996 * 126.59360 * 359.96624 * 18 17 15 35 35 H 1.07997 * 125.99081 * 180.02562 * 19 18 17 36 36 H 1.07995 * 125.65154 * 180.29006 * 21 20 19 37 37 H 1.09004 * 113.61123 * 334.57030 * 22 12 11 38 38 H 1.08999 * 113.61579 * 105.47527 * 22 12 11 39 39 H 1.08005 * 120.00084 * 180.02562 * 23 7 6 40 40 H 1.07999 * 120.00147 * 180.10835 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.5975 -2.0338 -1.4492 6 6 2.0578 -2.6853 -2.5782 7 6 2.8517 -2.0132 -3.4886 8 16 3.4391 -2.8438 -4.9272 9 8 4.6058 -2.1479 -5.3441 10 8 3.4292 -4.2314 -4.6216 11 7 2.3103 -2.6193 -6.1181 12 6 2.0519 -1.2742 -6.6382 13 1 2.8287 -0.5592 -6.3674 14 6 1.6870 -1.2512 -8.1319 15 6 0.6458 -0.1754 -7.7803 16 1 -0.2970 -0.2889 -8.3153 17 7 1.1714 1.1908 -7.8374 18 6 0.7187 2.2022 -8.6412 19 6 1.4790 3.2815 -8.3749 20 7 2.3712 2.9386 -7.4338 21 6 2.1889 1.6895 -7.1028 22 6 0.6262 -0.7696 -6.3602 23 6 3.1865 -0.6900 -3.2693 24 6 2.7254 -0.0382 -2.1408 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5139 0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5346 1.7703 -0.0320 29 1 0.9769 -2.5589 -0.7382 30 1 1.8006 -3.7206 -2.7469 31 1 1.8202 -3.3782 -6.4711 32 1 2.4909 -0.8880 -8.7723 33 1 1.2486 -2.1831 -8.4888 34 1 -0.0916 2.1454 -9.3528 35 1 1.3861 4.2530 -8.8374 36 1 2.7592 1.1440 -6.3655 37 1 -0.1029 -1.5697 -6.2317 38 1 0.5748 -0.0183 -5.5722 39 1 3.8064 -0.1647 -3.9809 40 1 2.9855 0.9960 -1.9704 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15608158_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:44 Heat of formation + Delta-G solvation = 28.052982 kcal Electronic energy + Delta-G solvation = -27230.410747 eV Core-core repulsion = 23334.374596 eV Total energy + Delta-G solvation = -3896.036151 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.14817 -40.70761 -40.05184 -38.43973 -37.72110 -37.07782 -34.89467 -33.03567 -32.38995 -32.21098 -30.17289 -27.26940 -26.81636 -25.94433 -24.10650 -23.01635 -22.46178 -22.14238 -21.17244 -20.55705 -19.30938 -18.64270 -18.21941 -18.02950 -17.43823 -16.88158 -16.51498 -16.15403 -16.13678 -15.85120 -15.66448 -15.53366 -15.33546 -14.83313 -14.75690 -14.50535 -14.21003 -13.98557 -13.92384 -13.81472 -13.67177 -13.43815 -13.35407 -13.27577 -12.67187 -12.61832 -12.46481 -12.30897 -12.02251 -11.82151 -11.66163 -10.86425 -10.72461 -10.51342 -10.46800 -10.32631 -10.16747 -9.41041 -5.07443 -0.79025 -0.40398 0.17263 1.14746 1.20033 1.56193 1.84233 1.85112 1.90349 2.26923 2.30980 2.66532 3.15117 3.19264 3.38188 3.40208 3.47055 3.60898 3.68424 3.75505 3.82568 3.89732 4.06740 4.12525 4.17824 4.31362 4.35685 4.45270 4.54168 4.58581 4.67809 4.72604 4.82122 4.86534 4.87153 4.92830 4.96058 4.97009 5.23595 5.24779 5.39103 5.68086 5.87805 6.01437 6.33282 6.67202 7.19420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.077 4.077 3 Si 0.769 3.231 4 C -0.063 4.063 5 C -0.119 4.119 6 C -0.023 4.023 7 C -0.674 4.674 8 S 2.705 3.295 9 O -0.985 6.985 10 O -0.987 6.987 11 N -1.086 6.086 12 C 0.107 3.893 13 H 0.113 0.887 14 C -0.143 4.143 15 C 0.104 3.896 16 H 0.145 0.855 17 N -0.440 5.440 18 C -0.040 4.040 19 C -0.064 4.064 20 N -0.536 5.536 21 C 0.167 3.833 22 C -0.147 4.147 23 C -0.024 4.024 24 C -0.140 4.140 25 H 0.397 0.603 26 H 0.115 0.885 27 H -0.297 1.297 28 H -0.286 1.286 29 H 0.143 0.857 30 H 0.151 0.849 31 H 0.434 0.566 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.204 0.796 35 H 0.174 0.826 36 H 0.216 0.784 37 H 0.134 0.866 38 H 0.087 0.913 39 H 0.155 0.845 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 -0.437 -3.590 8.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.187 4.187 3 Si 0.675 3.325 4 C -0.063 4.063 5 C -0.138 4.138 6 C -0.042 4.042 7 C -0.763 4.763 8 S 2.797 3.203 9 O -0.975 6.975 10 O -0.977 6.977 11 N -0.848 5.848 12 C 0.000 4.000 13 H 0.130 0.870 14 C -0.183 4.183 15 C 0.000 4.000 16 H 0.163 0.837 17 N -0.123 5.123 18 C -0.173 4.173 19 C -0.210 4.210 20 N -0.254 5.254 21 C -0.115 4.115 22 C -0.187 4.187 23 C -0.043 4.043 24 C -0.158 4.158 25 H 0.247 0.753 26 H 0.133 0.867 27 H -0.225 1.225 28 H -0.213 1.213 29 H 0.161 0.839 30 H 0.168 0.832 31 H 0.272 0.728 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.221 0.779 35 H 0.191 0.809 36 H 0.232 0.768 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.173 0.827 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.105 -0.120 -2.304 6.527 hybrid contribution -0.751 -0.902 0.360 1.228 sum -6.857 -1.021 -1.944 7.200 Atomic orbital electron populations 1.86506 1.16467 1.82059 1.50605 1.25225 0.85806 1.10573 0.97096 0.93775 0.78155 0.75279 0.85293 1.20813 0.94873 0.94973 0.95684 1.21310 1.00275 0.94253 0.97985 1.21130 0.91144 0.99896 0.92004 1.30793 1.15883 1.07521 1.22070 1.01291 0.73272 0.72386 0.73363 1.93587 1.46507 1.75732 1.81643 1.93576 1.86823 1.32365 1.84979 1.55164 1.60512 1.15611 1.53524 1.22825 0.98178 0.82863 0.96159 0.86982 1.23841 0.98853 1.00228 0.95387 1.22453 0.99447 0.77670 1.00442 0.83729 1.45467 1.26242 1.10583 1.29986 1.23187 1.04682 0.88070 1.01409 1.22662 0.96911 1.00746 1.00705 1.70275 1.25842 1.13122 1.16205 1.25279 0.93749 0.91497 1.01005 1.24014 0.97309 1.01908 0.95441 1.21119 0.94116 0.91895 0.97172 1.21366 0.98905 1.00918 0.94607 0.75260 0.86749 1.22515 1.21253 0.83903 0.83155 0.72779 0.90803 0.84784 0.77926 0.80854 0.76825 0.84808 0.89424 0.82697 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.80 12.77 -148.98 -1.90 -0.10 16 2 C -0.08 0.26 2.82 71.23 0.20 0.46 16 3 Si 0.77 -2.79 29.79 68.60 2.04 -0.75 16 4 C -0.06 0.19 5.39 -19.87 -0.11 0.08 16 5 C -0.12 0.28 9.61 22.27 0.21 0.49 16 6 C -0.02 0.05 9.52 22.27 0.21 0.26 16 7 C -0.67 1.14 5.95 22.27 0.13 1.27 16 8 S 2.71 0.23 5.71 -56.49 -0.32 -0.09 16 9 O -0.98 -6.55 16.79 -128.00 -2.15 -8.70 16 10 O -0.99 -6.48 17.28 -128.00 -2.21 -8.69 16 11 N -1.09 9.03 5.79 -167.19 -0.97 8.06 16 12 C 0.11 -1.03 3.91 45.52 0.18 -0.85 16 13 H 0.11 -0.92 5.28 -2.39 -0.01 -0.93 16 14 C -0.14 1.60 7.57 31.12 0.24 1.83 16 15 C 0.10 -1.19 4.88 45.58 0.22 -0.97 16 16 H 0.15 -2.27 8.14 -2.39 -0.02 -2.29 16 17 N -0.44 1.98 2.94 -503.49 -1.48 0.49 16 18 C -0.04 0.11 11.58 83.09 0.96 1.08 16 19 C -0.06 -0.20 11.87 83.52 0.99 0.79 16 20 N -0.54 -3.78 11.25 -200.30 -2.25 -6.03 16 21 C 0.17 0.03 11.18 180.26 2.02 2.05 16 22 C -0.15 1.94 7.31 31.18 0.23 2.16 16 23 C -0.02 0.07 9.52 22.27 0.21 0.28 16 24 C -0.14 0.54 8.67 22.27 0.19 0.73 16 25 H 0.40 -4.57 8.70 -74.06 -0.64 -5.21 16 26 H 0.12 -0.25 7.96 -2.39 -0.02 -0.27 16 27 H -0.30 -1.26 7.11 99.48 0.71 -0.55 16 28 H -0.29 -0.45 7.11 99.48 0.71 0.26 16 29 H 0.14 -0.55 8.06 -2.91 -0.02 -0.57 16 30 H 0.15 -0.61 7.61 -2.91 -0.02 -0.63 16 31 H 0.43 -5.52 8.93 -96.75 -0.86 -6.39 16 32 H 0.07 -0.52 8.14 -2.38 -0.02 -0.54 16 33 H 0.13 -2.08 8.14 -2.39 -0.02 -2.10 16 34 H 0.20 -1.95 8.06 -2.91 -0.02 -1.97 16 35 H 0.17 0.06 8.06 -2.91 -0.02 0.03 16 36 H 0.22 -1.08 5.88 -2.91 -0.02 -1.10 16 37 H 0.13 -2.25 8.14 -2.39 -0.02 -2.27 16 38 H 0.09 -1.06 8.02 -2.39 -0.02 -1.08 16 39 H 0.16 -0.88 7.62 -2.91 -0.02 -0.90 16 40 H 0.15 -1.12 4.88 -2.91 -0.01 -1.13 16 Total: 0.00 -30.08 347.96 -3.73 -33.80 By element: Atomic # 1 Polarization: -27.29 SS G_CDS: -0.37 Total: -27.66 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.89 Total: 9.66 kcal Atomic # 7 Polarization: 7.22 SS G_CDS: -4.70 Total: 2.52 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -6.26 Total: -17.49 kcal Atomic # 14 Polarization: -2.79 SS G_CDS: 2.04 Total: -0.75 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -0.32 Total: -0.09 kcal Total: -30.08 -3.73 -33.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15608158_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.853 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds