Wall clock time and date at job start Mon Mar 8 2021 13:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50701 * 109.46878 * 119.99874 * 2 1 3 5 5 C 1.33399 * 122.53891 * 74.73449 * 4 2 1 6 6 S 1.76200 * 125.20073 * 0.02603 * 5 4 2 7 7 O 1.42099 * 106.39779 * 203.54032 * 6 5 4 8 8 O 1.42103 * 106.40222 * 336.45868 * 6 5 4 9 9 N 1.65599 * 107.21929 * 90.00036 * 6 5 4 10 10 C 1.46496 * 119.99957 * 64.99674 * 9 6 5 11 11 H 1.09000 * 112.85294 * 346.19785 * 10 9 6 12 12 C 1.53785 * 113.61326 * 117.50342 * 10 9 6 13 13 C 1.53783 * 87.08356 * 89.11739 * 12 10 9 14 14 H 1.09004 * 113.61081 * 270.88825 * 13 12 10 15 15 N 1.46495 * 113.61822 * 139.98039 * 13 12 10 16 16 C 1.36877 * 126.39953 * 142.49968 * 15 13 12 17 17 C 1.34663 * 106.82338 * 180.02562 * 16 15 13 18 18 N 1.34136 * 108.01559 * 359.97438 * 17 16 15 19 19 C 1.30501 * 109.25704 * 359.73055 * 18 17 16 20 20 C 1.53783 * 87.07933 * 25.43201 * 13 12 10 21 21 S 1.75880 * 109.59312 * 179.90238 * 5 4 2 22 22 C 1.75886 * 90.97109 * 0.30354 * 21 5 4 23 23 C 1.33389 * 109.59463 * 359.82660 * 22 21 5 24 24 H 0.96695 * 113.99582 * 299.99951 * 1 2 3 25 25 H 1.09001 * 109.47395 * 239.99652 * 2 1 3 26 26 H 1.48497 * 110.00010 * 178.67854 * 3 2 1 27 27 H 1.48495 * 109.99824 * 300.00080 * 3 2 1 28 28 H 0.97003 * 119.99738 * 244.99895 * 9 6 5 29 29 H 1.09003 * 113.61209 * 203.66473 * 12 10 9 30 30 H 1.09000 * 113.61493 * 334.57074 * 12 10 9 31 31 H 1.08004 * 126.59172 * 0.04047 * 16 15 13 32 32 H 1.07997 * 125.99459 * 180.02562 * 17 16 15 33 33 H 1.07990 * 125.65023 * 180.28914 * 19 18 17 34 34 H 1.09004 * 113.61692 * 220.01989 * 20 13 12 35 35 H 1.09001 * 113.69119 * 89.13152 * 20 13 12 36 36 H 1.08002 * 125.20236 * 179.86868 * 22 21 5 37 37 H 1.07996 * 122.54013 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8913 -2.0375 1.3594 6 16 1.2646 -3.1569 0.1515 7 8 0.8943 -4.3366 0.8517 8 8 0.3589 -2.4137 -0.6527 9 7 2.5293 -3.5747 -0.8326 10 6 3.6615 -4.3293 -0.2897 11 1 3.6743 -4.3480 0.8000 12 6 3.8443 -5.7139 -0.9336 13 6 4.7369 -5.0233 -1.9783 14 1 4.1884 -4.6514 -2.8437 15 7 5.9214 -5.8031 -2.3457 16 6 6.4756 -5.8991 -3.5936 17 6 7.5431 -6.7127 -3.4843 18 7 7.6385 -7.1024 -2.2044 19 6 6.6739 -6.5566 -1.5153 20 6 5.0133 -3.9470 -0.9152 21 16 2.5630 -2.4993 2.9179 22 6 2.8609 -0.8137 3.3225 23 6 2.4638 -0.0349 2.3150 24 1 -0.3932 0.4417 0.7650 25 1 1.7924 -0.5139 -0.8899 26 1 3.5347 1.7701 0.0322 27 1 1.5617 2.4678 -1.2085 28 1 2.5203 -3.3196 -1.7684 29 1 4.3800 -6.4221 -0.3014 30 1 2.9252 -6.1270 -1.3492 31 1 6.1245 -5.4152 -4.4930 32 1 8.2067 -7.0003 -4.2864 33 1 6.5040 -6.6881 -0.4570 34 1 5.0380 -2.9336 -1.3160 35 1 5.8685 -4.1708 -0.2775 36 1 3.2991 -0.4630 4.2453 37 1 2.5514 1.0411 2.3432 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15608158_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:49 Heat of formation + Delta-G solvation = 43.645748 kcal Electronic energy + Delta-G solvation = -25677.347717 eV Core-core repulsion = 21871.139965 eV Total energy + Delta-G solvation = -3806.207752 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.13820 -40.50470 -40.19241 -38.18579 -37.06790 -36.86047 -34.96354 -32.56814 -31.56777 -30.25190 -28.08982 -27.22773 -26.19784 -24.44666 -22.72682 -22.25507 -21.70838 -20.78406 -20.22872 -19.67298 -18.89864 -18.30192 -18.19831 -17.43629 -16.72145 -16.49287 -16.19055 -16.03037 -15.86565 -15.60059 -15.29382 -15.24123 -14.76378 -14.62294 -14.43358 -14.25965 -14.08064 -13.94553 -13.82267 -13.69729 -13.11298 -13.07316 -12.79400 -12.74341 -12.59975 -12.47483 -12.18616 -12.02316 -11.81867 -10.97490 -10.88444 -10.59141 -10.52562 -10.52122 -9.79664 -9.44164 -5.20631 -0.96636 -0.66727 0.15971 0.49937 1.05092 1.07685 1.10802 1.49429 1.72217 1.78046 1.83358 2.29330 2.55563 2.84054 3.04042 3.25494 3.31675 3.35907 3.41535 3.46389 3.66614 3.77127 3.83799 3.85936 3.96410 4.11873 4.18656 4.22806 4.24954 4.46171 4.50731 4.54777 4.60085 4.69903 4.78128 4.85537 4.89416 5.31503 5.56738 5.82592 6.22186 6.54667 7.17278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.504 6.504 2 C -0.069 4.069 3 Si 0.690 3.310 4 C 0.007 3.993 5 C -0.779 4.779 6 S 2.707 3.293 7 O -0.946 6.946 8 O -0.915 6.915 9 N -1.101 6.101 10 C 0.131 3.869 11 H 0.112 0.888 12 C -0.155 4.155 13 C 0.108 3.892 14 H 0.124 0.876 15 N -0.450 5.450 16 C -0.057 4.057 17 C -0.029 4.029 18 N -0.493 5.493 19 C 0.181 3.819 20 C -0.153 4.153 21 S 0.223 5.777 22 C -0.161 4.161 23 C -0.163 4.163 24 H 0.372 0.628 25 H 0.116 0.884 26 H -0.253 1.253 27 H -0.247 1.247 28 H 0.420 0.580 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.202 0.798 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.180 0.820 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 5.379 3.405 6.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.307 6.307 2 C -0.183 4.183 3 Si 0.591 3.409 4 C -0.011 4.011 5 C -0.980 4.980 6 S 2.792 3.208 7 O -0.935 6.935 8 O -0.904 6.904 9 N -0.859 5.859 10 C 0.022 3.978 11 H 0.130 0.870 12 C -0.195 4.195 13 C 0.004 3.996 14 H 0.142 0.858 15 N -0.133 5.133 16 C -0.189 4.189 17 C -0.177 4.177 18 N -0.211 5.211 19 C -0.101 4.101 20 C -0.193 4.193 21 S 0.490 5.510 22 C -0.298 4.298 23 C -0.193 4.193 24 H 0.218 0.782 25 H 0.134 0.866 26 H -0.178 1.178 27 H -0.171 1.171 28 H 0.256 0.744 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.190 0.810 32 H 0.187 0.813 33 H 0.219 0.781 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.197 0.803 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.480 3.463 3.695 5.276 hybrid contribution -0.162 1.857 -1.169 2.201 sum 1.318 5.320 2.525 6.035 Atomic orbital electron populations 1.86831 1.14777 1.81094 1.48031 1.25117 0.87197 1.10365 0.95589 0.94802 0.80910 0.77249 0.87978 1.19290 0.93294 0.91510 0.97010 1.35784 1.27785 1.14237 1.20199 1.01868 0.72354 0.73361 0.73196 1.93641 1.79918 1.45598 1.74389 1.93753 1.57884 1.71964 1.66840 1.55592 1.37499 1.69401 1.23421 1.21437 0.85877 0.91919 0.98577 0.87042 1.23932 1.00925 0.97285 0.97327 1.23130 0.85289 0.92911 0.98264 0.85790 1.45561 1.22592 1.36579 1.08529 1.22787 0.99734 1.07317 0.89109 1.22367 0.99425 1.01035 0.94842 1.70345 1.22021 1.24126 1.04573 1.24887 0.90958 0.95861 0.98425 1.23905 0.97802 0.99992 0.97582 1.84368 1.54375 1.05245 1.06979 1.26258 1.02960 0.97143 1.03487 1.20238 1.03991 1.01605 0.93442 0.78151 0.86637 1.17793 1.17108 0.74436 0.87399 0.88756 0.80969 0.81314 0.78124 0.89204 0.87423 0.80255 0.82555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.50 -0.37 11.10 -56.75 -0.63 -1.00 16 2 C -0.07 0.05 1.79 36.01 0.06 0.11 16 3 Si 0.69 -1.58 30.25 -169.99 -5.14 -6.72 16 4 C 0.01 -0.01 5.13 -106.24 -0.55 -0.55 16 5 C -0.78 0.20 6.54 29.04 0.19 0.39 16 6 S 2.71 2.39 5.61 -107.50 -0.60 1.79 16 7 O -0.95 -3.59 17.67 -57.17 -1.01 -4.60 16 8 O -0.91 -3.26 14.28 -66.06 -0.94 -4.20 16 9 N -1.10 2.96 5.73 -4.20 -0.02 2.93 16 10 C 0.13 -0.46 4.44 -67.12 -0.30 -0.76 16 11 H 0.11 -0.45 8.05 -51.93 -0.42 -0.87 16 12 C -0.15 0.50 7.43 -25.92 -0.19 0.31 16 13 C 0.11 -0.35 4.46 -67.12 -0.30 -0.65 16 14 H 0.12 -0.56 8.11 -51.93 -0.42 -0.98 16 15 N -0.45 0.23 2.94 -110.60 -0.33 -0.10 16 16 C -0.06 -0.02 11.58 -16.57 -0.19 -0.21 16 17 C -0.03 -0.07 11.87 -17.81 -0.21 -0.28 16 18 N -0.49 -2.05 11.25 -14.67 -0.17 -2.21 16 19 C 0.18 0.17 11.36 -90.37 -1.03 -0.86 16 20 C -0.15 0.64 7.54 -25.92 -0.20 0.45 16 21 S 0.22 -0.35 23.22 -107.50 -2.50 -2.84 16 22 C -0.16 0.52 11.23 29.04 0.33 0.85 16 23 C -0.16 0.47 8.74 -41.21 -0.36 0.11 16 24 H 0.37 -1.35 8.70 45.56 0.40 -0.95 16 25 H 0.12 -0.07 7.18 -51.93 -0.37 -0.45 16 26 H -0.25 0.11 7.11 56.52 0.40 0.51 16 27 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 28 H 0.42 -1.95 8.78 -34.47 -0.30 -2.25 16 29 H 0.11 -0.43 6.94 -51.93 -0.36 -0.79 16 30 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 31 H 0.17 -0.40 8.06 -52.48 -0.42 -0.83 16 32 H 0.17 0.11 8.06 -52.49 -0.42 -0.31 16 33 H 0.20 -0.47 7.45 -52.49 -0.39 -0.87 16 34 H 0.09 -0.41 8.14 -51.93 -0.42 -0.83 16 35 H 0.11 -0.48 7.90 -51.93 -0.41 -0.89 16 36 H 0.18 -1.06 8.06 -52.49 -0.42 -1.48 16 37 H 0.16 -0.85 5.73 -52.49 -0.30 -1.15 16 LS Contribution 337.67 15.07 5.09 5.09 Total: 0.00 -12.74 337.67 -12.88 -25.62 By element: Atomic # 1 Polarization: -8.78 SS G_CDS: -3.89 Total: -12.67 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.74 Total: -1.09 kcal Atomic # 7 Polarization: 1.13 SS G_CDS: -0.51 Total: 0.62 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -2.58 Total: -9.80 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: -5.14 Total: -6.72 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -3.10 Total: -1.05 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -12.74 -12.88 -25.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15608158_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.270 kcal (2) G-P(sol) polarization free energy of solvation -12.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds