Wall clock time and date at job start Mon Mar 8 2021 13:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50701 * 109.46878 * 119.99874 * 2 1 3 5 5 C 1.33399 * 122.53891 * 74.73449 * 4 2 1 6 6 S 1.76200 * 125.20073 * 0.02603 * 5 4 2 7 7 O 1.42099 * 106.39779 * 203.54032 * 6 5 4 8 8 O 1.42103 * 106.40222 * 336.45868 * 6 5 4 9 9 N 1.65599 * 107.21929 * 90.00036 * 6 5 4 10 10 C 1.46496 * 119.99957 * 64.99674 * 9 6 5 11 11 H 1.09000 * 112.85294 * 346.19785 * 10 9 6 12 12 C 1.53785 * 113.61326 * 117.50342 * 10 9 6 13 13 C 1.53783 * 87.08356 * 89.11739 * 12 10 9 14 14 H 1.09004 * 113.61081 * 270.88825 * 13 12 10 15 15 N 1.46495 * 113.61822 * 139.98039 * 13 12 10 16 16 C 1.36877 * 126.39953 * 142.49968 * 15 13 12 17 17 C 1.34663 * 106.82338 * 180.02562 * 16 15 13 18 18 N 1.34136 * 108.01559 * 359.97438 * 17 16 15 19 19 C 1.30501 * 109.25704 * 359.73055 * 18 17 16 20 20 C 1.53783 * 87.07933 * 25.43201 * 13 12 10 21 21 S 1.75880 * 109.59312 * 179.90238 * 5 4 2 22 22 C 1.75886 * 90.97109 * 0.30354 * 21 5 4 23 23 C 1.33389 * 109.59463 * 359.82660 * 22 21 5 24 24 H 0.96695 * 113.99582 * 299.99951 * 1 2 3 25 25 H 1.09001 * 109.47395 * 239.99652 * 2 1 3 26 26 H 1.48497 * 110.00010 * 178.67854 * 3 2 1 27 27 H 1.48495 * 109.99824 * 300.00080 * 3 2 1 28 28 H 0.97003 * 119.99738 * 244.99895 * 9 6 5 29 29 H 1.09003 * 113.61209 * 203.66473 * 12 10 9 30 30 H 1.09000 * 113.61493 * 334.57074 * 12 10 9 31 31 H 1.08004 * 126.59172 * 0.04047 * 16 15 13 32 32 H 1.07997 * 125.99459 * 180.02562 * 17 16 15 33 33 H 1.07990 * 125.65023 * 180.28914 * 19 18 17 34 34 H 1.09004 * 113.61692 * 220.01989 * 20 13 12 35 35 H 1.09001 * 113.69119 * 89.13152 * 20 13 12 36 36 H 1.08002 * 125.20236 * 179.86868 * 22 21 5 37 37 H 1.07996 * 122.54013 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8913 -2.0375 1.3594 6 16 1.2646 -3.1569 0.1515 7 8 0.8943 -4.3366 0.8517 8 8 0.3589 -2.4137 -0.6527 9 7 2.5293 -3.5747 -0.8326 10 6 3.6615 -4.3293 -0.2897 11 1 3.6743 -4.3480 0.8000 12 6 3.8443 -5.7139 -0.9336 13 6 4.7369 -5.0233 -1.9783 14 1 4.1884 -4.6514 -2.8437 15 7 5.9214 -5.8031 -2.3457 16 6 6.4756 -5.8991 -3.5936 17 6 7.5431 -6.7127 -3.4843 18 7 7.6385 -7.1024 -2.2044 19 6 6.6739 -6.5566 -1.5153 20 6 5.0133 -3.9470 -0.9152 21 16 2.5630 -2.4993 2.9179 22 6 2.8609 -0.8137 3.3225 23 6 2.4638 -0.0349 2.3150 24 1 -0.3932 0.4417 0.7650 25 1 1.7924 -0.5139 -0.8899 26 1 3.5347 1.7701 0.0322 27 1 1.5617 2.4678 -1.2085 28 1 2.5203 -3.3196 -1.7684 29 1 4.3800 -6.4221 -0.3014 30 1 2.9252 -6.1270 -1.3492 31 1 6.1245 -5.4152 -4.4930 32 1 8.2067 -7.0003 -4.2864 33 1 6.5040 -6.6881 -0.4570 34 1 5.0380 -2.9336 -1.3160 35 1 5.8685 -4.1708 -0.2775 36 1 3.2991 -0.4630 4.2453 37 1 2.5514 1.0411 2.3432 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15608158_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:48 Heat of formation + Delta-G solvation = 39.457867 kcal Electronic energy + Delta-G solvation = -25677.529317 eV Core-core repulsion = 21871.139965 eV Total energy + Delta-G solvation = -3806.389352 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.11378 -40.31348 -40.04727 -38.31096 -37.09629 -36.90510 -34.87074 -32.50712 -31.38907 -30.26774 -27.99380 -26.94218 -26.03113 -24.25925 -22.66168 -22.24376 -21.62933 -20.67101 -20.11160 -19.53838 -18.84724 -18.22687 -18.14454 -17.26185 -16.62635 -16.41881 -16.15197 -15.95159 -15.74326 -15.49686 -15.21464 -15.08196 -14.69062 -14.60044 -14.29279 -14.11110 -13.93509 -13.74392 -13.68131 -13.64681 -13.28412 -13.21661 -12.78307 -12.62099 -12.49288 -12.29904 -12.13011 -11.77455 -11.70334 -10.96794 -10.77356 -10.51254 -10.44685 -10.39862 -9.63301 -9.47547 -5.03499 -0.88628 -0.58907 0.30145 0.72128 1.09118 1.22690 1.29294 1.63994 1.82855 1.87012 1.96251 2.20263 2.56036 3.09440 3.27516 3.34731 3.50231 3.57075 3.60819 3.69041 3.84780 3.89601 3.97737 4.10612 4.21431 4.31532 4.37030 4.42473 4.55738 4.59325 4.74734 4.76775 4.80144 4.86168 4.92078 5.08909 5.13952 5.34758 5.79688 5.84646 6.27337 6.80577 7.13346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.090 4.090 3 Si 0.790 3.210 4 C 0.010 3.990 5 C -0.798 4.798 6 S 2.719 3.281 7 O -0.983 6.983 8 O -0.949 6.949 9 N -1.091 6.091 10 C 0.127 3.873 11 H 0.117 0.883 12 C -0.157 4.157 13 C 0.104 3.896 14 H 0.139 0.861 15 N -0.445 5.445 16 C -0.052 4.052 17 C -0.063 4.063 18 N -0.542 5.542 19 C 0.177 3.823 20 C -0.141 4.141 21 S 0.207 5.793 22 C -0.144 4.144 23 C -0.171 4.171 24 H 0.388 0.612 25 H 0.108 0.892 26 H -0.271 1.271 27 H -0.298 1.298 28 H 0.429 0.571 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.198 0.802 32 H 0.173 0.827 33 H 0.227 0.773 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.211 0.789 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 6.925 4.531 8.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.201 4.201 3 Si 0.693 3.307 4 C -0.009 4.009 5 C -1.001 5.001 6 S 2.807 3.193 7 O -0.973 6.973 8 O -0.939 6.939 9 N -0.852 5.852 10 C 0.019 3.981 11 H 0.135 0.865 12 C -0.197 4.197 13 C 0.001 3.999 14 H 0.157 0.843 15 N -0.127 5.127 16 C -0.185 4.185 17 C -0.209 4.209 18 N -0.260 5.260 19 C -0.106 4.106 20 C -0.181 4.181 21 S 0.474 5.526 22 C -0.282 4.282 23 C -0.200 4.200 24 H 0.237 0.763 25 H 0.125 0.875 26 H -0.197 1.197 27 H -0.225 1.225 28 H 0.267 0.733 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.215 0.785 32 H 0.191 0.809 33 H 0.243 0.757 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.228 0.772 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.939 4.980 4.823 7.199 hybrid contribution -0.322 1.398 -1.524 2.093 sum 1.617 6.378 3.299 7.360 Atomic orbital electron populations 1.86784 1.15750 1.81722 1.49361 1.25468 0.86734 1.12160 0.95723 0.93662 0.78027 0.73613 0.85414 1.19426 0.92846 0.91271 0.97318 1.35481 1.29563 1.14388 1.20675 1.01056 0.72580 0.72712 0.72997 1.93591 1.81162 1.47310 1.75206 1.93705 1.59935 1.72489 1.67794 1.55267 1.37006 1.69354 1.23549 1.21547 0.85817 0.91721 0.99029 0.86486 1.23985 1.00706 0.97542 0.97512 1.23400 0.84446 0.92924 0.99108 0.84344 1.45712 1.22816 1.36159 1.08046 1.23173 0.98877 1.06312 0.90158 1.22637 1.00928 1.02549 0.94826 1.70279 1.24050 1.26026 1.05689 1.25345 0.90400 0.95369 0.99445 1.23858 0.97265 1.00033 0.96973 1.84439 1.54554 1.07143 1.06455 1.26655 1.01582 0.95629 1.04296 1.20500 1.03738 1.03033 0.92719 0.76302 0.87500 1.19672 1.22548 0.73297 0.86618 0.89502 0.78468 0.80945 0.75689 0.88365 0.86781 0.77215 0.79762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.14 11.10 -128.40 -1.43 -2.56 16 2 C -0.09 0.12 1.79 71.24 0.13 0.25 16 3 Si 0.79 -4.21 30.25 68.60 2.08 -2.14 16 4 C 0.01 -0.03 5.13 -20.92 -0.11 -0.14 16 5 C -0.80 0.29 6.54 66.72 0.44 0.72 16 6 S 2.72 8.06 5.61 -56.49 -0.32 7.74 16 7 O -0.98 -9.06 17.67 -128.00 -2.26 -11.32 16 8 O -0.95 -8.38 14.28 -119.50 -1.71 -10.09 16 9 N -1.09 5.41 5.73 -167.19 -0.96 4.46 16 10 C 0.13 -0.93 4.44 45.52 0.20 -0.72 16 11 H 0.12 -0.95 8.05 -2.39 -0.02 -0.97 16 12 C -0.16 1.06 7.43 31.12 0.23 1.29 16 13 C 0.10 -0.76 4.46 45.52 0.20 -0.55 16 14 H 0.14 -1.42 8.11 -2.39 -0.02 -1.44 16 15 N -0.45 0.64 2.94 -503.82 -1.48 -0.84 16 16 C -0.05 -0.03 11.58 83.09 0.96 0.93 16 17 C -0.06 -0.37 11.87 83.52 0.99 0.62 16 18 N -0.54 -5.07 11.25 -200.32 -2.25 -7.33 16 19 C 0.18 0.35 11.36 180.26 2.05 2.40 16 20 C -0.14 1.34 7.54 31.12 0.23 1.58 16 21 S 0.21 -0.75 23.22 -56.49 -1.31 -2.06 16 22 C -0.14 1.26 11.23 66.72 0.75 2.00 16 23 C -0.17 1.34 8.74 21.22 0.19 1.53 16 24 H 0.39 -2.73 8.70 -74.06 -0.64 -3.37 16 25 H 0.11 -0.04 7.18 -2.39 -0.02 -0.06 16 26 H -0.27 0.66 7.11 99.48 0.71 1.36 16 27 H -0.30 -0.90 7.11 99.48 0.71 -0.19 16 28 H 0.43 -3.85 8.78 -96.74 -0.85 -4.70 16 29 H 0.12 -0.96 6.94 -2.39 -0.02 -0.98 16 30 H 0.09 -0.43 8.14 -2.39 -0.02 -0.44 16 31 H 0.20 -1.12 8.06 -2.91 -0.02 -1.15 16 32 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 33 H 0.23 -1.15 7.45 -2.92 -0.02 -1.17 16 34 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H 0.11 -1.17 7.90 -2.39 -0.02 -1.18 16 36 H 0.21 -3.21 8.06 -2.91 -0.02 -3.23 16 37 H 0.19 -2.58 5.73 -2.91 -0.02 -2.60 16 Total: 0.00 -31.23 337.67 -3.70 -34.92 By element: Atomic # 1 Polarization: -20.37 SS G_CDS: -0.32 Total: -20.69 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.26 Total: 9.91 kcal Atomic # 7 Polarization: 0.98 SS G_CDS: -4.69 Total: -3.72 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -5.39 Total: -23.97 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.08 Total: -2.14 kcal Atomic # 16 Polarization: 7.31 SS G_CDS: -1.63 Total: 5.68 kcal Total: -31.23 -3.70 -34.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15608158_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.381 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds