Wall clock time and date at job start Mon Mar 8 2021 13:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50703 * 109.46971 * 120.00357 * 2 1 3 5 5 C 1.33387 * 125.20343 * 41.61740 * 4 2 1 6 6 S 1.76193 * 122.54187 * 359.97438 * 5 4 2 7 7 O 1.42099 * 106.40463 * 46.28564 * 6 5 4 8 8 O 1.42096 * 106.40345 * 179.20648 * 6 5 4 9 9 N 1.65599 * 107.21785 * 292.74495 * 6 5 4 10 10 C 1.46503 * 120.00018 * 297.65260 * 9 6 5 11 11 H 1.08993 * 112.84729 * 14.44018 * 10 9 6 12 12 C 1.53778 * 113.61660 * 145.63985 * 10 9 6 13 13 C 1.53780 * 87.08349 * 139.98152 * 12 10 9 14 14 H 1.09004 * 113.61143 * 220.02231 * 13 12 10 15 15 N 1.46496 * 113.61232 * 89.19866 * 13 12 10 16 16 C 1.36889 * 126.39215 * 112.23760 * 15 13 12 17 17 C 1.34672 * 106.80910 * 179.84075 * 16 15 13 18 18 N 1.34123 * 108.02528 * 0.41463 * 17 16 15 19 19 C 1.30497 * 109.25534 * 359.73904 * 18 17 16 20 20 C 1.53780 * 87.07888 * 334.56443 * 13 12 10 21 21 C 1.38429 * 114.91794 * 180.24934 * 5 4 2 22 22 C 1.33388 * 114.91870 * 359.49135 * 21 5 4 23 23 S 1.75882 * 125.19927 * 221.58968 * 4 2 1 24 24 H 0.96695 * 114.00259 * 64.95475 * 1 2 3 25 25 H 1.09001 * 109.46428 * 240.00054 * 2 1 3 26 26 H 1.48494 * 110.00437 * 303.58525 * 3 2 1 27 27 H 1.48509 * 109.99936 * 64.90631 * 3 2 1 28 28 H 0.97007 * 120.00264 * 117.65427 * 9 6 5 29 29 H 1.08996 * 113.61582 * 254.53329 * 12 10 9 30 30 H 1.09008 * 113.61209 * 25.43254 * 12 10 9 31 31 H 1.07995 * 126.59437 * 359.97438 * 16 15 13 32 32 H 1.08002 * 125.98560 * 180.18945 * 17 16 15 33 33 H 1.08000 * 125.65057 * 179.97438 * 19 18 17 34 34 H 1.08999 * 113.61904 * 270.88400 * 20 13 12 35 35 H 1.09000 * 113.60940 * 139.98049 * 20 13 12 36 36 H 1.07995 * 122.53677 * 179.73095 * 21 5 4 37 37 H 1.07999 * 125.20297 * 180.21369 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 1.4194 -1.8357 1.7315 6 16 0.0472 -2.6618 0.9974 7 8 0.3121 -2.7180 -0.3976 8 8 -0.1967 -3.8162 1.7892 9 7 -1.2730 -1.6797 1.1835 10 6 -1.7512 -1.3418 2.5265 11 1 -1.0273 -1.5801 3.3057 12 6 -2.3284 0.0793 2.6355 13 6 -3.4204 -0.5182 3.5384 14 1 -4.4123 -0.1046 3.3561 15 7 -3.0631 -0.5346 4.9590 16 6 -3.6447 0.2075 5.9514 17 6 -3.0182 -0.1170 7.0985 18 7 -2.0737 -1.0254 6.8129 19 6 -2.0947 -1.2803 5.5332 20 6 -3.1699 -1.8560 2.8227 21 6 2.0442 -2.3020 2.8754 22 6 3.0702 -1.5612 3.2971 23 16 3.2827 -0.1832 2.2250 24 1 -0.3933 0.3739 -0.8003 25 1 1.7923 -0.5138 -0.8900 26 1 1.4916 2.4926 -1.1624 27 1 1.6613 2.4325 1.2638 28 1 -1.7299 -1.3281 0.4033 29 1 -1.6707 0.7794 3.1505 30 1 -2.7080 0.4700 1.6912 31 1 -4.4523 0.9153 5.8369 32 1 -3.2356 0.2865 8.0765 33 1 -1.4450 -1.9726 5.0185 34 1 -3.7795 -1.9945 1.9298 35 1 -3.1915 -2.7183 3.4891 36 1 1.7275 -3.1997 3.3854 37 1 3.6749 -1.7726 4.1666 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15608158_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:52 Heat of formation + Delta-G solvation = 49.208553 kcal Electronic energy + Delta-G solvation = -26682.062593 eV Core-core repulsion = 22876.096063 eV Total energy + Delta-G solvation = -3805.966530 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.20691 -40.22010 -39.60566 -38.30314 -37.56418 -36.73464 -34.85608 -32.39472 -32.03607 -30.20646 -27.55687 -27.08524 -26.04816 -24.34238 -22.55742 -22.14159 -21.80873 -21.08431 -20.00495 -19.16294 -18.69479 -18.32603 -18.22943 -17.80109 -17.31149 -16.43677 -16.23622 -15.96696 -15.64250 -15.46151 -15.14389 -15.05938 -14.79429 -14.44500 -14.28282 -14.09445 -13.89935 -13.75173 -13.72129 -13.63446 -13.14933 -13.05113 -12.91542 -12.72592 -12.71198 -12.40700 -12.26218 -11.85315 -11.69386 -11.06564 -10.84057 -10.53430 -10.47385 -10.12546 -9.76848 -9.42227 -5.29935 -0.63934 -0.44881 0.25733 0.58013 0.92899 1.09937 1.12469 1.36908 1.68078 1.69825 2.06102 2.31581 2.66704 2.94532 2.97915 3.17937 3.35439 3.45816 3.49348 3.54269 3.72034 3.87188 3.94725 4.06396 4.12886 4.28228 4.32756 4.37819 4.39443 4.57026 4.59958 4.68973 4.70805 4.82265 4.89576 5.05588 5.12221 5.33388 5.84557 5.96704 6.01129 6.24723 7.19402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.066 4.066 3 Si 0.671 3.329 4 C -0.054 4.054 5 C -0.670 4.670 6 S 2.718 3.282 7 O -0.955 6.955 8 O -0.960 6.960 9 N -1.077 6.077 10 C 0.132 3.868 11 H 0.110 0.890 12 C -0.143 4.143 13 C 0.103 3.897 14 H 0.118 0.882 15 N -0.443 5.443 16 C -0.053 4.053 17 C -0.029 4.029 18 N -0.490 5.490 19 C 0.177 3.823 20 C -0.155 4.155 21 C -0.080 4.080 22 C -0.209 4.209 23 S 0.162 5.838 24 H 0.393 0.607 25 H 0.112 0.888 26 H -0.236 1.236 27 H -0.238 1.238 28 H 0.421 0.579 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.200 0.800 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.159 0.841 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 5.416 -3.589 6.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.177 4.177 3 Si 0.567 3.433 4 C -0.175 4.175 5 C -0.769 4.769 6 S 2.804 3.196 7 O -0.945 6.945 8 O -0.950 6.950 9 N -0.837 5.837 10 C 0.023 3.977 11 H 0.127 0.873 12 C -0.184 4.184 13 C -0.002 4.002 14 H 0.136 0.864 15 N -0.127 5.127 16 C -0.185 4.185 17 C -0.177 4.177 18 N -0.208 5.208 19 C -0.105 4.105 20 C -0.195 4.195 21 C -0.108 4.108 22 C -0.345 4.345 23 S 0.426 5.574 24 H 0.244 0.756 25 H 0.130 0.870 26 H -0.159 1.159 27 H -0.161 1.161 28 H 0.258 0.742 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.192 0.808 32 H 0.188 0.812 33 H 0.217 0.783 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.177 0.823 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.417 5.979 -2.800 6.753 hybrid contribution -2.270 -0.242 -0.865 2.442 sum -0.853 5.737 -3.665 6.861 Atomic orbital electron populations 1.86472 1.16766 1.84832 1.46335 1.24510 0.85294 1.11321 0.96540 0.95056 0.91256 0.73959 0.82990 1.23785 0.99072 0.96148 0.98457 1.29874 1.25313 1.10486 1.11267 1.01306 0.72483 0.72592 0.73213 1.93564 1.84559 1.86139 1.30218 1.93602 1.84464 1.45054 1.71852 1.55288 1.46200 1.69522 1.12654 1.22341 0.95400 0.95745 0.84170 0.87261 1.23767 0.97119 0.97140 1.00326 1.22227 1.00267 0.99746 0.77925 0.86386 1.45299 1.27757 1.32350 1.07264 1.22754 1.04359 1.03015 0.88373 1.22374 0.96867 0.99904 0.98532 1.70346 1.21706 1.16234 1.12512 1.24997 0.95187 1.00336 0.89989 1.23932 0.97332 0.96640 1.01593 1.19781 0.95348 1.01280 0.94362 1.25919 1.04033 0.99499 1.05054 1.84254 1.29051 1.25575 1.18544 0.75590 0.87004 1.15856 1.16117 0.74222 0.90013 0.87216 0.80819 0.81222 0.78310 0.86911 0.89226 0.82347 0.80534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.79 7.80 -49.16 -0.38 1.41 16 2 C -0.07 0.13 2.12 36.01 0.08 0.21 16 3 Si 0.67 -1.79 31.22 -169.99 -5.31 -7.10 16 4 C -0.05 0.00 5.77 -36.00 -0.21 -0.21 16 5 C -0.67 -0.77 5.72 -41.21 -0.24 -1.01 16 6 S 2.72 4.58 4.85 -107.50 -0.52 4.06 16 7 O -0.95 -3.60 16.57 -63.67 -1.05 -4.66 16 8 O -0.96 -4.39 17.16 -57.17 -0.98 -5.37 16 9 N -1.08 2.05 3.91 -4.20 -0.02 2.04 16 10 C 0.13 -0.28 3.84 -67.12 -0.26 -0.54 16 11 H 0.11 -0.17 5.85 -51.93 -0.30 -0.47 16 12 C -0.14 0.47 7.63 -25.92 -0.20 0.27 16 13 C 0.10 -0.28 4.87 -67.12 -0.33 -0.61 16 14 H 0.12 -0.51 8.14 -51.93 -0.42 -0.93 16 15 N -0.44 -0.07 2.94 -110.59 -0.32 -0.40 16 16 C -0.05 -0.03 11.58 -16.56 -0.19 -0.22 16 17 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 18 N -0.49 -2.32 11.25 -14.67 -0.17 -2.49 16 19 C 0.18 0.37 10.95 -90.38 -0.99 -0.62 16 20 C -0.15 0.42 7.23 -25.92 -0.19 0.24 16 21 C -0.08 -0.07 9.70 -41.21 -0.40 -0.46 16 22 C -0.21 0.08 11.23 29.04 0.33 0.41 16 23 S 0.16 -0.15 20.81 -107.50 -2.24 -2.38 16 24 H 0.39 -2.84 8.86 45.56 0.40 -2.44 16 25 H 0.11 -0.30 7.94 -51.93 -0.41 -0.71 16 26 H -0.24 0.33 7.11 56.52 0.40 0.73 16 27 H -0.24 -0.04 7.11 56.52 0.40 0.36 16 28 H 0.42 -1.74 7.88 -34.48 -0.27 -2.01 16 29 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 30 H 0.11 -0.55 8.14 -51.92 -0.42 -0.98 16 31 H 0.17 -0.40 8.06 -52.49 -0.42 -0.83 16 32 H 0.17 0.13 8.06 -52.49 -0.42 -0.30 16 33 H 0.20 0.00 6.20 -52.49 -0.33 -0.32 16 34 H 0.11 -0.48 8.14 -51.93 -0.42 -0.90 16 35 H 0.09 -0.14 7.84 -51.93 -0.41 -0.54 16 36 H 0.16 0.02 7.74 -52.49 -0.41 -0.38 16 37 H 0.18 -0.45 8.06 -52.49 -0.42 -0.88 16 LS Contribution 332.28 15.07 5.01 5.01 Total: 0.00 -11.21 332.28 -12.67 -23.87 By element: Atomic # 1 Polarization: -7.28 SS G_CDS: -3.88 Total: -11.16 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.80 Total: -2.84 kcal Atomic # 7 Polarization: -0.34 SS G_CDS: -0.51 Total: -0.85 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -2.42 Total: -8.62 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: -5.31 Total: -7.10 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -2.76 Total: 1.68 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -11.21 -12.67 -23.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15608158_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.083 kcal (2) G-P(sol) polarization free energy of solvation -11.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds