Wall clock time and date at job start Mon Mar 8 2021 13:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50703 * 109.46971 * 120.00357 * 2 1 3 5 5 C 1.33387 * 125.20343 * 41.61740 * 4 2 1 6 6 S 1.76193 * 122.54187 * 359.97438 * 5 4 2 7 7 O 1.42099 * 106.40463 * 46.28564 * 6 5 4 8 8 O 1.42096 * 106.40345 * 179.20648 * 6 5 4 9 9 N 1.65599 * 107.21785 * 292.74495 * 6 5 4 10 10 C 1.46503 * 120.00018 * 297.65260 * 9 6 5 11 11 H 1.08993 * 112.84729 * 14.44018 * 10 9 6 12 12 C 1.53778 * 113.61660 * 145.63985 * 10 9 6 13 13 C 1.53780 * 87.08349 * 139.98152 * 12 10 9 14 14 H 1.09004 * 113.61143 * 220.02231 * 13 12 10 15 15 N 1.46496 * 113.61232 * 89.19866 * 13 12 10 16 16 C 1.36889 * 126.39215 * 112.23760 * 15 13 12 17 17 C 1.34672 * 106.80910 * 179.84075 * 16 15 13 18 18 N 1.34123 * 108.02528 * 0.41463 * 17 16 15 19 19 C 1.30497 * 109.25534 * 359.73904 * 18 17 16 20 20 C 1.53780 * 87.07888 * 334.56443 * 13 12 10 21 21 C 1.38429 * 114.91794 * 180.24934 * 5 4 2 22 22 C 1.33388 * 114.91870 * 359.49135 * 21 5 4 23 23 S 1.75882 * 125.19927 * 221.58968 * 4 2 1 24 24 H 0.96695 * 114.00259 * 64.95475 * 1 2 3 25 25 H 1.09001 * 109.46428 * 240.00054 * 2 1 3 26 26 H 1.48494 * 110.00437 * 303.58525 * 3 2 1 27 27 H 1.48509 * 109.99936 * 64.90631 * 3 2 1 28 28 H 0.97007 * 120.00264 * 117.65427 * 9 6 5 29 29 H 1.08996 * 113.61582 * 254.53329 * 12 10 9 30 30 H 1.09008 * 113.61209 * 25.43254 * 12 10 9 31 31 H 1.07995 * 126.59437 * 359.97438 * 16 15 13 32 32 H 1.08002 * 125.98560 * 180.18945 * 17 16 15 33 33 H 1.08000 * 125.65057 * 179.97438 * 19 18 17 34 34 H 1.08999 * 113.61904 * 270.88400 * 20 13 12 35 35 H 1.09000 * 113.60940 * 139.98049 * 20 13 12 36 36 H 1.07995 * 122.53677 * 179.73095 * 21 5 4 37 37 H 1.07999 * 125.20297 * 180.21369 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 1.4194 -1.8357 1.7315 6 16 0.0472 -2.6618 0.9974 7 8 0.3121 -2.7180 -0.3976 8 8 -0.1967 -3.8162 1.7892 9 7 -1.2730 -1.6797 1.1835 10 6 -1.7512 -1.3418 2.5265 11 1 -1.0273 -1.5801 3.3057 12 6 -2.3284 0.0793 2.6355 13 6 -3.4204 -0.5182 3.5384 14 1 -4.4123 -0.1046 3.3561 15 7 -3.0631 -0.5346 4.9590 16 6 -3.6447 0.2075 5.9514 17 6 -3.0182 -0.1170 7.0985 18 7 -2.0737 -1.0254 6.8129 19 6 -2.0947 -1.2803 5.5332 20 6 -3.1699 -1.8560 2.8227 21 6 2.0442 -2.3020 2.8754 22 6 3.0702 -1.5612 3.2971 23 16 3.2827 -0.1832 2.2250 24 1 -0.3933 0.3739 -0.8003 25 1 1.7923 -0.5138 -0.8900 26 1 1.4916 2.4926 -1.1624 27 1 1.6613 2.4325 1.2638 28 1 -1.7299 -1.3281 0.4033 29 1 -1.6707 0.7794 3.1505 30 1 -2.7080 0.4700 1.6912 31 1 -4.4523 0.9153 5.8369 32 1 -3.2356 0.2865 8.0765 33 1 -1.4450 -1.9726 5.0185 34 1 -3.7795 -1.9945 1.9298 35 1 -3.1915 -2.7183 3.4891 36 1 1.7275 -3.1997 3.3854 37 1 3.6749 -1.7726 4.1666 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15608158_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:51 Heat of formation + Delta-G solvation = 47.178726 kcal Electronic energy + Delta-G solvation = -26682.150613 eV Core-core repulsion = 22876.096063 eV Total energy + Delta-G solvation = -3806.054550 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.23154 -40.09815 -39.52117 -38.41563 -37.47876 -36.94819 -34.81554 -32.40409 -31.95660 -30.26754 -27.48923 -26.86118 -25.94839 -24.27415 -22.53674 -22.21131 -21.81877 -21.02810 -20.04435 -19.03180 -18.65041 -18.26619 -18.16999 -17.73243 -17.23614 -16.38884 -16.17975 -16.02366 -15.56197 -15.45489 -15.15555 -14.98564 -14.85167 -14.39386 -14.18139 -13.99876 -13.87944 -13.68096 -13.63811 -13.47288 -13.27960 -13.16436 -12.99038 -12.73644 -12.64113 -12.31021 -12.20253 -11.75139 -11.65918 -10.95912 -10.89927 -10.55402 -10.36549 -10.07871 -9.71587 -9.49933 -5.08485 -0.67185 -0.46113 0.31450 0.63301 1.04571 1.05784 1.15022 1.53770 1.76878 1.84331 2.06240 2.17229 2.67654 3.09035 3.16187 3.36197 3.44424 3.52945 3.62085 3.67031 3.81384 3.98175 4.03696 4.14631 4.26625 4.39518 4.42995 4.54118 4.59208 4.67673 4.71042 4.78751 4.82215 4.90667 4.92457 5.12561 5.23366 5.31298 5.79441 6.23022 6.23750 6.47653 7.09750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.073 4.073 3 Si 0.734 3.266 4 C -0.062 4.062 5 C -0.684 4.684 6 S 2.728 3.272 7 O -0.979 6.979 8 O -0.996 6.996 9 N -1.062 6.062 10 C 0.122 3.878 11 H 0.097 0.903 12 C -0.130 4.130 13 C 0.101 3.899 14 H 0.145 0.855 15 N -0.439 5.439 16 C -0.040 4.040 17 C -0.063 4.063 18 N -0.536 5.536 19 C 0.165 3.835 20 C -0.152 4.152 21 C -0.099 4.099 22 C -0.214 4.214 23 S 0.185 5.815 24 H 0.411 0.589 25 H 0.121 0.879 26 H -0.248 1.248 27 H -0.277 1.277 28 H 0.433 0.567 29 H 0.066 0.934 30 H 0.136 0.864 31 H 0.207 0.793 32 H 0.178 0.822 33 H 0.208 0.792 34 H 0.134 0.866 35 H 0.074 0.926 36 H 0.156 0.844 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 6.836 -4.867 8.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.184 4.184 3 Si 0.633 3.367 4 C -0.183 4.183 5 C -0.785 4.785 6 S 2.816 3.184 7 O -0.969 6.969 8 O -0.986 6.986 9 N -0.825 5.825 10 C 0.013 3.987 11 H 0.115 0.885 12 C -0.170 4.170 13 C -0.002 4.002 14 H 0.163 0.837 15 N -0.122 5.122 16 C -0.174 4.174 17 C -0.210 4.210 18 N -0.255 5.255 19 C -0.117 4.117 20 C -0.192 4.192 21 C -0.128 4.128 22 C -0.350 4.350 23 S 0.448 5.552 24 H 0.265 0.735 25 H 0.139 0.861 26 H -0.172 1.172 27 H -0.203 1.203 28 H 0.273 0.727 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.223 0.777 32 H 0.195 0.805 33 H 0.225 0.775 34 H 0.152 0.848 35 H 0.093 0.907 36 H 0.173 0.827 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.587 7.380 -4.132 8.478 hybrid contribution -2.031 -0.626 -0.453 2.173 sum -1.444 6.754 -4.585 8.290 Atomic orbital electron populations 1.86421 1.16024 1.85094 1.47770 1.24683 0.86099 1.11690 0.95892 0.94249 0.90504 0.71998 0.79966 1.24154 0.99183 0.95914 0.99030 1.29749 1.25680 1.11213 1.11845 1.00667 0.72951 0.72538 0.72265 1.93520 1.85184 1.86723 1.31493 1.93556 1.85165 1.47488 1.72436 1.54939 1.45087 1.69045 1.13406 1.22474 0.95617 0.97037 0.83535 0.88469 1.23746 0.96343 0.95783 1.01094 1.22479 1.01642 0.99890 0.76233 0.83695 1.45477 1.26824 1.31407 1.08447 1.23222 1.04065 1.02435 0.87639 1.22703 0.97617 1.00690 0.99983 1.70265 1.23314 1.17769 1.14160 1.25144 0.95967 1.00900 0.89698 1.23975 0.97004 0.96122 1.02103 1.19884 0.96200 1.01803 0.94867 1.26222 1.03728 0.99419 1.05627 1.84140 1.28292 1.24868 1.17853 0.73507 0.86114 1.17160 1.20255 0.72733 0.91475 0.84601 0.77651 0.80498 0.77545 0.84798 0.90720 0.82680 0.78772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 4.07 7.80 -135.66 -1.06 3.01 16 2 C -0.07 0.32 2.12 71.24 0.15 0.47 16 3 Si 0.73 -4.31 31.22 68.60 2.14 -2.17 16 4 C -0.06 -0.02 5.77 24.59 0.14 0.12 16 5 C -0.68 -2.30 5.72 21.22 0.12 -2.18 16 6 S 2.73 12.09 4.85 -56.49 -0.27 11.81 16 7 O -0.98 -8.06 16.57 -121.79 -2.02 -10.07 16 8 O -1.00 -11.09 17.16 -128.00 -2.20 -13.28 16 9 N -1.06 4.17 3.91 -167.20 -0.65 3.51 16 10 C 0.12 -0.52 3.84 45.52 0.17 -0.35 16 11 H 0.10 -0.16 5.85 -2.39 -0.01 -0.18 16 12 C -0.13 1.02 7.63 31.12 0.24 1.26 16 13 C 0.10 -0.70 4.87 45.52 0.22 -0.48 16 14 H 0.15 -1.70 8.14 -2.38 -0.02 -1.72 16 15 N -0.44 -0.05 2.94 -503.81 -1.48 -1.54 16 16 C -0.04 -0.03 11.58 83.09 0.96 0.94 16 17 C -0.06 -0.41 11.87 83.52 0.99 0.59 16 18 N -0.54 -6.08 11.25 -200.31 -2.25 -8.34 16 19 C 0.17 0.93 10.95 180.26 1.97 2.90 16 20 C -0.15 0.94 7.23 31.12 0.22 1.16 16 21 C -0.10 -0.32 9.70 21.22 0.21 -0.11 16 22 C -0.21 0.01 11.23 66.72 0.75 0.76 16 23 S 0.18 -0.32 20.81 -56.49 -1.18 -1.49 16 24 H 0.41 -6.56 8.86 -74.06 -0.66 -7.22 16 25 H 0.12 -0.73 7.94 -2.39 -0.02 -0.75 16 26 H -0.25 0.94 7.11 99.48 0.71 1.65 16 27 H -0.28 -0.19 7.11 99.48 0.71 0.52 16 28 H 0.43 -4.03 7.88 -96.74 -0.76 -4.79 16 29 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.14 -1.76 8.14 -2.38 -0.02 -1.78 16 31 H 0.21 -1.39 8.06 -2.91 -0.02 -1.42 16 32 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 33 H 0.21 0.48 6.20 -2.91 -0.02 0.46 16 34 H 0.13 -1.39 8.14 -2.39 -0.02 -1.41 16 35 H 0.07 -0.19 7.84 -2.39 -0.02 -0.21 16 36 H 0.16 0.44 7.74 -2.91 -0.02 0.42 16 37 H 0.20 -0.93 8.06 -2.91 -0.02 -0.95 16 Total: 0.00 -27.57 332.28 -3.06 -30.62 By element: Atomic # 1 Polarization: -16.92 SS G_CDS: -0.25 Total: -17.17 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 6.16 Total: 5.08 kcal Atomic # 7 Polarization: -1.97 SS G_CDS: -4.39 Total: -6.36 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -5.27 Total: -20.34 kcal Atomic # 14 Polarization: -4.31 SS G_CDS: 2.14 Total: -2.17 kcal Atomic # 16 Polarization: 11.77 SS G_CDS: -1.45 Total: 10.32 kcal Total: -27.57 -3.06 -30.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15608158_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.802 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds