Wall clock time and date at job start Mon Mar 8 2021 13:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86295 * 109.47449 * 2 1 4 4 C 1.50705 * 109.47169 * 239.99854 * 2 1 3 5 5 C 1.33389 * 125.20314 * 299.99797 * 4 2 1 6 6 C 1.38428 * 114.91778 * 180.02562 * 5 4 2 7 7 S 1.76202 * 122.53807 * 179.97438 * 6 5 4 8 8 O 1.42106 * 106.39819 * 336.46181 * 7 6 5 9 9 O 1.42100 * 106.40113 * 203.54588 * 7 6 5 10 10 N 1.65602 * 107.21814 * 90.00038 * 7 6 5 11 11 C 1.46499 * 119.99527 * 65.00227 * 10 7 6 12 12 H 1.08996 * 112.85385 * 13.79976 * 11 10 7 13 13 C 1.53781 * 113.61225 * 145.00003 * 11 10 7 14 14 C 1.53786 * 87.17350 * 139.93836 * 13 11 10 15 15 H 1.09000 * 113.61138 * 220.06261 * 14 13 11 16 16 N 1.46496 * 113.61518 * 89.15486 * 14 13 11 17 17 C 1.36888 * 126.39324 * 119.71333 * 16 14 13 18 18 C 1.34670 * 106.81400 * 179.84249 * 17 16 14 19 19 N 1.34123 * 108.02082 * 0.42179 * 18 17 16 20 20 C 1.30495 * 109.25781 * 359.73302 * 19 18 17 21 21 C 1.53782 * 113.61191 * 242.49676 * 11 10 7 22 22 C 1.33390 * 114.92192 * 0.25644 * 6 5 4 23 23 S 1.75885 * 109.59445 * 359.63009 * 22 6 5 24 24 H 0.96696 * 114.00477 * 299.99991 * 1 2 3 25 25 H 1.09006 * 109.47023 * 120.00076 * 2 1 3 26 26 H 1.48496 * 110.00312 * 178.67691 * 3 2 1 27 27 H 1.48501 * 110.00045 * 300.00332 * 3 2 1 28 28 H 1.07997 * 122.53968 * 0.06235 * 5 4 2 29 29 H 0.96997 * 119.99792 * 244.99809 * 10 7 6 30 30 H 1.09002 * 113.61445 * 254.52836 * 13 11 10 31 31 H 1.09002 * 113.61408 * 25.34566 * 13 11 10 32 32 H 1.08002 * 126.59256 * 359.97438 * 17 16 14 33 33 H 1.07995 * 125.98571 * 180.12007 * 18 17 16 34 34 H 1.08001 * 125.65244 * 180.02562 * 20 19 18 35 35 H 1.08997 * 113.61668 * 334.56642 * 21 11 10 36 36 H 1.08998 * 113.61674 * 105.39151 * 21 11 10 37 37 H 1.07995 * 125.20383 * 179.75890 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6739 -1.9812 -1.5436 6 6 2.2449 -2.4175 -2.7268 7 16 2.0355 -4.0594 -3.3312 8 8 1.7262 -4.8659 -2.2028 9 8 3.1386 -4.3145 -4.1899 10 7 0.6859 -4.0601 -4.2908 11 6 0.6700 -3.2838 -5.5331 12 1 1.6623 -2.9501 -5.8364 13 6 -0.1288 -3.9502 -6.6657 14 6 -0.6539 -2.5482 -7.0173 15 1 -1.7092 -2.5328 -7.2894 16 7 0.1918 -1.8271 -7.9717 17 6 -0.1836 -1.3716 -9.2068 18 6 0.8936 -0.7668 -9.7430 19 7 1.9018 -0.8589 -8.8633 20 6 1.4888 -1.4927 -7.8000 21 6 -0.3886 -2.1685 -5.5489 22 6 2.9704 -1.5026 -3.3717 23 16 2.9476 0.0090 -2.4728 24 1 -0.3934 0.4417 0.7650 25 1 1.7923 -0.5139 0.8900 26 1 3.5346 1.7702 0.0322 27 1 1.5615 2.4679 -1.2085 28 1 1.0656 -2.6210 -0.9216 29 1 -0.0941 -4.5746 -4.0303 30 1 0.4978 -4.3892 -7.4421 31 1 -0.9034 -4.6306 -6.3119 32 1 -1.1572 -1.4753 -9.6627 33 1 0.9390 -0.2951 -10.7134 34 1 2.0853 -1.7130 -6.9270 35 1 -1.2353 -2.3607 -4.8899 36 1 0.0279 -1.1692 -5.4225 37 1 3.4904 -1.6646 -4.3042 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15608158_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:55 Heat of formation + Delta-G solvation = 42.127460 kcal Electronic energy + Delta-G solvation = -25650.975333 eV Core-core repulsion = 21844.701744 eV Total energy + Delta-G solvation = -3806.273590 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -43.29611 -40.34713 -39.48940 -38.30717 -37.66116 -36.95297 -35.08623 -32.54065 -32.07624 -30.27483 -27.32796 -27.22737 -26.20207 -24.93600 -22.66178 -22.23850 -21.47968 -21.17031 -20.28854 -19.12735 -18.66933 -18.54224 -18.24703 -17.85178 -17.61275 -16.40465 -16.25009 -16.12176 -15.80277 -15.62690 -15.50268 -14.86609 -14.57252 -14.49465 -14.35683 -14.23441 -14.13615 -13.97179 -13.86855 -13.81077 -13.22488 -13.14022 -12.93550 -12.85830 -12.70556 -12.55441 -12.24732 -12.02232 -11.86596 -10.91551 -10.82316 -10.69315 -10.59067 -10.22647 -9.93093 -9.49209 -5.40558 -0.86739 -0.57368 0.23211 0.51153 0.91334 1.02072 1.03190 1.42018 1.60765 1.72332 1.87128 2.24815 2.59572 2.83550 2.99912 3.08240 3.25492 3.29220 3.36242 3.54049 3.63078 3.72782 3.79497 3.87245 4.06721 4.15173 4.21020 4.24586 4.26278 4.46947 4.50597 4.55163 4.57183 4.75346 4.81471 4.87669 4.99122 5.25383 5.65659 5.78342 6.16208 6.37433 7.11959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.036 4.036 3 Si 0.671 3.329 4 C -0.183 4.183 5 C -0.038 4.038 6 C -0.684 4.684 7 S 2.706 3.294 8 O -0.948 6.948 9 O -0.949 6.949 10 N -1.100 6.100 11 C 0.119 3.881 12 H 0.118 0.882 13 C -0.146 4.146 14 C 0.107 3.893 15 H 0.122 0.878 16 N -0.444 5.444 17 C -0.050 4.050 18 C -0.028 4.028 19 N -0.488 5.488 20 C 0.173 3.827 21 C -0.158 4.158 22 C -0.087 4.087 23 S 0.146 5.854 24 H 0.387 0.613 25 H 0.088 0.912 26 H -0.238 1.238 27 H -0.235 1.235 28 H 0.159 0.841 29 H 0.423 0.577 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.176 0.824 33 H 0.172 0.828 34 H 0.198 0.802 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 2.603 3.094 7.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.149 4.149 3 Si 0.570 3.430 4 C -0.300 4.300 5 C -0.066 4.066 6 C -0.784 4.784 7 S 2.793 3.207 8 O -0.938 6.938 9 O -0.939 6.939 10 N -0.858 5.858 11 C 0.011 3.989 12 H 0.135 0.865 13 C -0.187 4.187 14 C 0.002 3.998 15 H 0.140 0.860 16 N -0.128 5.128 17 C -0.182 4.182 18 C -0.176 4.176 19 N -0.206 5.206 20 C -0.108 4.108 21 C -0.198 4.198 22 C -0.226 4.226 23 S 0.409 5.591 24 H 0.235 0.765 25 H 0.106 0.894 26 H -0.161 1.161 27 H -0.158 1.158 28 H 0.176 0.824 29 H 0.259 0.741 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.193 0.807 33 H 0.189 0.811 34 H 0.214 0.786 35 H 0.133 0.867 36 H 0.105 0.895 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.417 3.993 2.024 5.632 hybrid contribution -1.905 -1.610 0.441 2.533 sum -5.322 2.383 2.465 6.331 Atomic orbital electron populations 1.86482 1.16642 1.81900 1.49944 1.23990 0.85997 1.09731 0.95141 0.94695 0.82067 0.77988 0.88251 1.23715 1.07270 0.97630 1.01397 1.19561 0.98071 0.94706 0.94302 1.30027 1.14187 1.26231 1.07936 1.01747 0.73014 0.72928 0.73029 1.93624 1.83929 1.65459 1.50752 1.93630 1.50596 1.83131 1.66557 1.55505 1.34920 1.61832 1.33546 1.22596 0.99914 0.92252 0.84095 0.86470 1.23798 1.00763 0.95921 0.98177 1.22215 0.95527 0.93078 0.88999 0.85974 1.45295 1.10848 1.42448 1.14182 1.22789 1.02209 1.05982 0.87202 1.22388 0.89394 1.05007 1.00792 1.70341 1.30621 1.18007 1.01641 1.24932 0.83337 1.02026 1.00545 1.24014 1.00871 1.00349 0.94585 1.25940 0.98304 0.95702 1.02646 1.84549 1.46867 1.13046 1.14616 0.76507 0.89442 1.16133 1.15831 0.82357 0.74061 0.89172 0.86883 0.80653 0.81109 0.78603 0.86709 0.89545 0.79679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.68 12.83 -35.23 -0.45 0.23 16 2 C -0.04 0.04 2.95 36.01 0.11 0.14 16 3 Si 0.67 -1.26 30.97 -169.99 -5.26 -6.52 16 4 C -0.18 -0.22 5.76 -36.00 -0.21 -0.43 16 5 C -0.04 -0.05 9.56 -41.21 -0.39 -0.44 16 6 C -0.68 -0.49 5.86 -41.21 -0.24 -0.73 16 7 S 2.71 2.35 5.77 -107.50 -0.62 1.73 16 8 O -0.95 -3.64 17.63 -57.17 -1.01 -4.65 16 9 O -0.95 -3.36 17.16 -57.17 -0.98 -4.34 16 10 N -1.10 2.90 5.79 -4.20 -0.02 2.88 16 11 C 0.12 -0.37 3.92 -67.12 -0.26 -0.63 16 12 H 0.12 -0.34 5.28 -51.93 -0.27 -0.61 16 13 C -0.15 0.57 7.57 -25.92 -0.20 0.37 16 14 C 0.11 -0.38 4.89 -67.02 -0.33 -0.70 16 15 H 0.12 -0.63 8.14 -51.93 -0.42 -1.05 16 16 N -0.44 0.26 2.94 -110.49 -0.33 -0.06 16 17 C -0.05 0.00 11.58 -16.56 -0.19 -0.19 16 18 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 19 N -0.49 -2.02 11.25 -14.67 -0.17 -2.19 16 20 C 0.17 0.22 11.20 -90.38 -1.01 -0.79 16 21 C -0.16 0.62 7.30 -25.82 -0.19 0.43 16 22 C -0.09 -0.01 10.70 29.04 0.31 0.30 16 23 S 0.15 0.13 20.58 -107.50 -2.21 -2.08 16 24 H 0.39 -2.41 8.74 45.56 0.40 -2.01 16 25 H 0.09 -0.24 7.96 -51.93 -0.41 -0.65 16 26 H -0.24 -0.10 7.11 56.52 0.40 0.30 16 27 H -0.23 -0.24 7.11 56.52 0.40 0.16 16 28 H 0.16 0.10 7.97 -52.49 -0.42 -0.31 16 29 H 0.42 -1.99 8.94 -34.47 -0.31 -2.30 16 30 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 31 H 0.11 -0.64 8.14 -51.93 -0.42 -1.06 16 32 H 0.18 -0.52 8.06 -52.49 -0.42 -0.95 16 33 H 0.17 0.05 8.06 -52.49 -0.42 -0.38 16 34 H 0.20 -0.26 5.87 -52.49 -0.31 -0.57 16 35 H 0.11 -0.59 8.14 -51.93 -0.42 -1.01 16 36 H 0.09 -0.25 8.03 -51.93 -0.42 -0.67 16 37 H 0.19 -0.41 8.00 -52.49 -0.42 -0.83 16 LS Contribution 341.76 15.07 5.15 5.15 Total: 0.00 -12.78 341.76 -12.61 -25.39 By element: Atomic # 1 Polarization: -8.70 SS G_CDS: -3.89 Total: -12.60 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.82 Total: -2.95 kcal Atomic # 7 Polarization: 1.14 SS G_CDS: -0.51 Total: 0.63 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -2.44 Total: -8.76 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: -5.26 Total: -6.52 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.83 Total: -0.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -12.78 -12.61 -25.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15608158_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.517 kcal (2) G-P(sol) polarization free energy of solvation -12.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds