Wall clock time and date at job start Mon Mar 8 2021 13:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86295 * 109.47449 * 2 1 4 4 C 1.50705 * 109.47169 * 239.99854 * 2 1 3 5 5 C 1.33389 * 125.20314 * 299.99797 * 4 2 1 6 6 C 1.38428 * 114.91778 * 180.02562 * 5 4 2 7 7 S 1.76202 * 122.53807 * 179.97438 * 6 5 4 8 8 O 1.42106 * 106.39819 * 336.46181 * 7 6 5 9 9 O 1.42100 * 106.40113 * 203.54588 * 7 6 5 10 10 N 1.65602 * 107.21814 * 90.00038 * 7 6 5 11 11 C 1.46499 * 119.99527 * 65.00227 * 10 7 6 12 12 H 1.08996 * 112.85385 * 13.79976 * 11 10 7 13 13 C 1.53781 * 113.61225 * 145.00003 * 11 10 7 14 14 C 1.53786 * 87.17350 * 139.93836 * 13 11 10 15 15 H 1.09000 * 113.61138 * 220.06261 * 14 13 11 16 16 N 1.46496 * 113.61518 * 89.15486 * 14 13 11 17 17 C 1.36888 * 126.39324 * 119.71333 * 16 14 13 18 18 C 1.34670 * 106.81400 * 179.84249 * 17 16 14 19 19 N 1.34123 * 108.02082 * 0.42179 * 18 17 16 20 20 C 1.30495 * 109.25781 * 359.73302 * 19 18 17 21 21 C 1.53782 * 113.61191 * 242.49676 * 11 10 7 22 22 C 1.33390 * 114.92192 * 0.25644 * 6 5 4 23 23 S 1.75885 * 109.59445 * 359.63009 * 22 6 5 24 24 H 0.96696 * 114.00477 * 299.99991 * 1 2 3 25 25 H 1.09006 * 109.47023 * 120.00076 * 2 1 3 26 26 H 1.48496 * 110.00312 * 178.67691 * 3 2 1 27 27 H 1.48501 * 110.00045 * 300.00332 * 3 2 1 28 28 H 1.07997 * 122.53968 * 0.06235 * 5 4 2 29 29 H 0.96997 * 119.99792 * 244.99809 * 10 7 6 30 30 H 1.09002 * 113.61445 * 254.52836 * 13 11 10 31 31 H 1.09002 * 113.61408 * 25.34566 * 13 11 10 32 32 H 1.08002 * 126.59256 * 359.97438 * 17 16 14 33 33 H 1.07995 * 125.98571 * 180.12007 * 18 17 16 34 34 H 1.08001 * 125.65244 * 180.02562 * 20 19 18 35 35 H 1.08997 * 113.61668 * 334.56642 * 21 11 10 36 36 H 1.08998 * 113.61674 * 105.39151 * 21 11 10 37 37 H 1.07995 * 125.20383 * 179.75890 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6739 -1.9812 -1.5436 6 6 2.2449 -2.4175 -2.7268 7 16 2.0355 -4.0594 -3.3312 8 8 1.7262 -4.8659 -2.2028 9 8 3.1386 -4.3145 -4.1899 10 7 0.6859 -4.0601 -4.2908 11 6 0.6700 -3.2838 -5.5331 12 1 1.6623 -2.9501 -5.8364 13 6 -0.1288 -3.9502 -6.6657 14 6 -0.6539 -2.5482 -7.0173 15 1 -1.7092 -2.5328 -7.2894 16 7 0.1918 -1.8271 -7.9717 17 6 -0.1836 -1.3716 -9.2068 18 6 0.8936 -0.7668 -9.7430 19 7 1.9018 -0.8589 -8.8633 20 6 1.4888 -1.4927 -7.8000 21 6 -0.3886 -2.1685 -5.5489 22 6 2.9704 -1.5026 -3.3717 23 16 2.9476 0.0090 -2.4728 24 1 -0.3934 0.4417 0.7650 25 1 1.7923 -0.5139 0.8900 26 1 3.5346 1.7702 0.0322 27 1 1.5615 2.4679 -1.2085 28 1 1.0656 -2.6210 -0.9216 29 1 -0.0941 -4.5746 -4.0303 30 1 0.4978 -4.3892 -7.4421 31 1 -0.9034 -4.6306 -6.3119 32 1 -1.1572 -1.4753 -9.6627 33 1 0.9390 -0.2951 -10.7134 34 1 2.0853 -1.7130 -6.9270 35 1 -1.2353 -2.3607 -4.8899 36 1 0.0279 -1.1692 -5.4225 37 1 3.4904 -1.6646 -4.3042 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15608158_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:55 Heat of formation + Delta-G solvation = 36.961219 kcal Electronic energy + Delta-G solvation = -25651.199358 eV Core-core repulsion = 21844.701744 eV Total energy + Delta-G solvation = -3806.497615 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.25166 -40.15751 -39.48719 -38.48721 -37.55332 -37.14142 -34.98484 -32.49086 -32.06408 -30.27413 -27.30252 -26.92049 -26.03277 -24.94953 -22.57088 -22.24666 -21.43537 -21.10956 -20.29006 -19.11876 -18.69726 -18.42207 -18.09549 -17.91861 -17.42997 -16.35237 -16.22490 -16.16143 -15.65321 -15.56823 -15.45189 -14.86187 -14.59331 -14.38182 -14.34711 -14.20185 -14.13985 -13.92462 -13.78789 -13.52704 -13.43604 -13.34344 -12.95351 -12.74038 -12.68448 -12.38827 -12.24612 -11.95228 -11.77118 -10.97056 -10.65545 -10.60507 -10.57185 -10.22067 -9.97948 -9.50880 -5.28441 -0.91745 -0.61777 0.19789 0.47728 0.87632 1.04596 1.12918 1.50894 1.74848 1.81034 1.90192 2.16545 2.55069 3.07052 3.10288 3.28646 3.35032 3.49638 3.59046 3.68027 3.78003 3.81719 3.97051 4.00583 4.10718 4.34615 4.37669 4.44424 4.52882 4.58862 4.63763 4.76850 4.77463 4.77700 4.87154 4.95605 5.15162 5.29510 5.78538 5.94853 6.22458 6.79641 7.08798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.042 4.042 3 Si 0.753 3.247 4 C -0.195 4.195 5 C -0.048 4.048 6 C -0.685 4.685 7 S 2.725 3.275 8 O -0.979 6.979 9 O -0.979 6.979 10 N -1.084 6.084 11 C 0.108 3.892 12 H 0.111 0.889 13 C -0.139 4.139 14 C 0.104 3.896 15 H 0.148 0.852 16 N -0.440 5.440 17 C -0.038 4.038 18 C -0.064 4.064 19 N -0.537 5.537 20 C 0.163 3.837 21 C -0.150 4.150 22 C -0.083 4.083 23 S 0.122 5.878 24 H 0.408 0.592 25 H 0.108 0.892 26 H -0.271 1.271 27 H -0.277 1.277 28 H 0.163 0.837 29 H 0.435 0.565 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.207 0.793 33 H 0.177 0.823 34 H 0.212 0.788 35 H 0.134 0.866 36 H 0.076 0.924 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.966 2.176 3.652 9.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.154 4.154 3 Si 0.656 3.344 4 C -0.312 4.312 5 C -0.077 4.077 6 C -0.785 4.785 7 S 2.812 3.188 8 O -0.969 6.969 9 O -0.969 6.969 10 N -0.846 5.846 11 C 0.000 4.000 12 H 0.129 0.871 13 C -0.179 4.179 14 C 0.000 4.000 15 H 0.166 0.834 16 N -0.123 5.123 17 C -0.171 4.171 18 C -0.210 4.210 19 N -0.256 5.256 20 C -0.119 4.119 21 C -0.190 4.190 22 C -0.222 4.222 23 S 0.385 5.615 24 H 0.260 0.740 25 H 0.125 0.875 26 H -0.197 1.197 27 H -0.203 1.203 28 H 0.181 0.819 29 H 0.274 0.726 30 H 0.095 0.905 31 H 0.156 0.844 32 H 0.224 0.776 33 H 0.194 0.806 34 H 0.228 0.772 35 H 0.152 0.848 36 H 0.095 0.905 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.357 3.538 2.624 6.935 hybrid contribution -1.339 -1.446 0.232 1.985 sum -6.697 2.091 2.856 7.575 Atomic orbital electron populations 1.86431 1.16301 1.82451 1.51620 1.24121 0.86428 1.10014 0.94874 0.93807 0.78882 0.75864 0.85855 1.24071 1.07196 0.97845 1.02094 1.19699 0.98449 0.94920 0.94622 1.29980 1.14521 1.25985 1.08060 1.00945 0.73019 0.72492 0.72343 1.93576 1.84477 1.66661 1.52220 1.93591 1.52464 1.83726 1.67127 1.55157 1.34353 1.62016 1.33097 1.22793 1.00267 0.92962 0.83977 0.87105 1.23831 1.00918 0.96019 0.97124 1.22475 0.96209 0.92785 0.88520 0.83412 1.45478 1.10488 1.41869 1.14441 1.23239 1.02682 1.04206 0.86998 1.22693 0.90125 1.06777 1.01453 1.70260 1.32380 1.19798 1.03137 1.25211 0.84418 1.01853 1.00453 1.24013 1.00976 0.99335 0.94693 1.26179 0.97930 0.95008 1.03077 1.84655 1.47478 1.13957 1.15387 0.74034 0.87457 1.19673 1.20315 0.81939 0.72588 0.90454 0.84439 0.77592 0.80601 0.77186 0.84818 0.90548 0.77956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.90 12.83 -148.98 -1.91 -0.01 16 2 C -0.04 0.11 2.95 71.24 0.21 0.32 16 3 Si 0.75 -2.60 30.97 68.60 2.12 -0.48 16 4 C -0.19 -0.53 5.76 24.59 0.14 -0.39 16 5 C -0.05 -0.14 9.56 21.22 0.20 0.06 16 6 C -0.69 -1.31 5.86 21.22 0.12 -1.19 16 7 S 2.72 5.93 5.77 -56.49 -0.33 5.60 16 8 O -0.98 -8.08 17.63 -128.00 -2.26 -10.34 16 9 O -0.98 -7.74 17.16 -128.00 -2.20 -9.94 16 10 N -1.08 6.39 5.79 -167.20 -0.97 5.42 16 11 C 0.11 -0.74 3.92 45.52 0.18 -0.56 16 12 H 0.11 -0.61 5.28 -2.39 -0.01 -0.63 16 13 C -0.14 1.29 7.57 31.12 0.24 1.53 16 14 C 0.10 -0.92 4.89 45.58 0.22 -0.70 16 15 H 0.15 -1.99 8.14 -2.39 -0.02 -2.01 16 16 N -0.44 0.76 2.94 -503.48 -1.48 -0.72 16 17 C -0.04 0.02 11.58 83.09 0.96 0.99 16 18 C -0.06 -0.34 11.87 83.52 0.99 0.65 16 19 N -0.54 -5.30 11.25 -200.32 -2.25 -7.55 16 20 C 0.16 0.54 11.20 180.27 2.02 2.56 16 21 C -0.15 1.38 7.30 31.18 0.23 1.61 16 22 C -0.08 -0.07 10.70 66.72 0.71 0.64 16 23 S 0.12 0.35 20.58 -56.49 -1.16 -0.82 16 24 H 0.41 -5.65 8.74 -74.06 -0.65 -6.30 16 25 H 0.11 -0.70 7.96 -2.38 -0.02 -0.72 16 26 H -0.27 -0.50 7.11 99.48 0.71 0.20 16 27 H -0.28 -0.94 7.11 99.48 0.71 -0.23 16 28 H 0.16 0.24 7.97 -2.91 -0.02 0.22 16 29 H 0.44 -4.62 8.94 -96.75 -0.87 -5.49 16 30 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.14 -1.94 8.14 -2.39 -0.02 -1.96 16 32 H 0.21 -1.64 8.06 -2.91 -0.02 -1.67 16 33 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 34 H 0.21 -0.33 5.87 -2.91 -0.02 -0.35 16 35 H 0.13 -1.70 8.14 -2.39 -0.02 -1.72 16 36 H 0.08 -0.48 8.03 -2.39 -0.02 -0.50 16 37 H 0.20 -0.75 8.00 -2.91 -0.02 -0.77 16 Total: 0.00 -30.81 341.76 -4.54 -35.35 By element: Atomic # 1 Polarization: -21.71 SS G_CDS: -0.34 Total: -22.04 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 6.23 Total: 5.52 kcal Atomic # 7 Polarization: 1.85 SS G_CDS: -4.70 Total: -2.85 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -6.37 Total: -20.28 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: 2.12 Total: -0.48 kcal Atomic # 16 Polarization: 6.27 SS G_CDS: -1.49 Total: 4.79 kcal Total: -30.81 -4.54 -35.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15608158_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.313 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds