Wall clock time and date at job start Mon Mar 8 2021 13:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86295 * 109.47626 * 2 1 4 4 C 1.50703 * 109.46774 * 240.00006 * 2 1 3 5 5 C 1.38216 * 119.99945 * 283.93730 * 4 2 1 6 6 S 1.76202 * 120.00118 * 359.97438 * 5 4 2 7 7 O 1.42095 * 106.40087 * 49.80571 * 6 5 4 8 8 O 1.42098 * 106.40189 * 182.72617 * 6 5 4 9 9 N 1.65606 * 107.21578 * 296.26594 * 6 5 4 10 10 C 1.46499 * 119.99906 * 296.57092 * 9 6 5 11 11 H 1.08997 * 112.85067 * 13.28203 * 10 9 6 12 12 C 1.53775 * 113.61548 * 144.48174 * 10 9 6 13 13 C 1.53780 * 87.08177 * 139.97434 * 12 10 9 14 14 H 1.08996 * 113.61485 * 220.01459 * 13 12 10 15 15 N 1.46500 * 113.60934 * 89.20241 * 13 12 10 16 16 C 1.36880 * 126.39898 * 112.88337 * 15 13 12 17 17 C 1.34670 * 106.81907 * 179.97438 * 16 15 13 18 18 N 1.34128 * 108.02249 * 359.97438 * 17 16 15 19 19 C 1.30506 * 109.25024 * 359.72524 * 18 17 16 20 20 C 1.53782 * 113.61111 * 242.08827 * 10 9 6 21 21 C 1.38255 * 119.99712 * 180.25392 * 5 4 2 22 22 C 1.38211 * 120.00265 * 359.51953 * 21 5 4 23 23 C 1.38262 * 119.99863 * 0.43888 * 22 21 5 24 24 C 1.38217 * 119.99560 * 359.81108 * 23 22 21 25 25 H 0.96703 * 114.00026 * 300.00086 * 1 2 3 26 26 H 1.09000 * 109.47065 * 120.00349 * 2 1 3 27 27 H 1.48501 * 110.00408 * 178.68310 * 3 2 1 28 28 H 1.48506 * 109.99996 * 300.00251 * 3 2 1 29 29 H 0.96999 * 119.99903 * 116.56877 * 9 6 5 30 30 H 1.08997 * 113.61773 * 254.52486 * 12 10 9 31 31 H 1.09009 * 113.61300 * 25.34761 * 12 10 9 32 32 H 1.08002 * 126.59376 * 359.95564 * 16 15 13 33 33 H 1.07999 * 125.99120 * 179.97438 * 17 16 15 34 34 H 1.07999 * 125.64455 * 180.28814 * 19 18 17 35 35 H 1.09005 * 113.61247 * 334.56700 * 20 10 9 36 36 H 1.08998 * 113.61664 * 105.46988 * 20 10 9 37 37 H 1.08004 * 119.99778 * 179.72561 * 21 5 4 38 38 H 1.08003 * 120.00470 * 180.27590 * 22 21 5 39 39 H 1.07998 * 120.00059 * 179.83540 * 23 22 21 40 40 H 1.08003 * 119.99197 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2305 5 6 1.8897 -2.0904 -1.2971 6 16 1.2502 -3.0190 0.0569 7 8 -0.0023 -2.4351 0.3879 8 8 1.4020 -4.3889 -0.2887 9 7 2.2482 -2.7497 1.3508 10 6 3.6488 -3.1759 1.2967 11 1 3.9717 -3.4418 0.2902 12 6 4.6119 -2.2202 2.0203 13 6 5.3451 -3.4717 2.5311 14 1 5.6726 -3.3933 3.5677 15 7 6.4048 -3.9381 1.6335 16 6 7.7494 -3.9279 1.8899 17 6 8.3571 -4.4425 0.8038 18 7 7.4094 -4.7589 -0.0911 19 6 6.2371 -4.4653 0.4016 20 6 4.0144 -4.2264 2.3586 21 6 2.3554 -2.7423 -2.4239 22 6 2.8532 -2.0138 -3.4877 23 6 2.8939 -0.6334 -3.4214 24 6 2.4331 0.0181 -2.2928 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5139 0.8900 27 1 3.5347 1.7702 0.0321 28 1 1.5616 2.4679 -1.2085 29 1 1.9054 -2.3097 2.1444 30 1 5.2102 -1.6089 1.3447 31 1 4.1375 -1.6376 2.8102 32 1 8.2305 -3.5747 2.7900 33 1 9.4210 -4.5769 0.6759 34 1 5.2900 -4.6159 -0.0951 35 1 3.3767 -4.1944 3.2421 36 1 4.1309 -5.2324 1.9557 37 1 2.3270 -3.8208 -2.4741 38 1 3.2128 -2.5229 -4.3697 39 1 3.2853 -0.0642 -4.2516 40 1 2.4654 1.0964 -2.2410 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15608158_2726874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:46:02 Heat of formation + Delta-G solvation = 42.667163 kcal Electronic energy + Delta-G solvation = -28051.876396 eV Core-core repulsion = 24156.473963 eV Total energy + Delta-G solvation = -3895.402433 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.28015 -40.76641 -40.31927 -38.37873 -37.42935 -36.79940 -35.11442 -33.08097 -32.53820 -32.50828 -30.26904 -27.24047 -27.05403 -26.15203 -24.54402 -22.81600 -22.64498 -22.21257 -21.33053 -20.58738 -19.21362 -18.58986 -18.41417 -18.21917 -17.72985 -17.22273 -16.87905 -16.27995 -16.06382 -15.90448 -15.65653 -15.49791 -15.26563 -14.97896 -14.85271 -14.46727 -14.20920 -14.00486 -13.98628 -13.87074 -13.76583 -13.59120 -13.23522 -13.02966 -12.90828 -12.84213 -12.57607 -12.21360 -12.17588 -11.98308 -11.76403 -10.90364 -10.84468 -10.58558 -10.58453 -10.36525 -10.19108 -9.48099 -5.17779 -0.73412 -0.36310 -0.00826 1.02323 1.03268 1.44548 1.62042 1.73685 1.79514 2.24877 2.26102 2.63526 2.83648 3.04491 3.10090 3.29361 3.31537 3.37437 3.56581 3.57888 3.72824 3.79842 3.80970 3.85788 3.87659 4.08251 4.16617 4.18329 4.24744 4.28433 4.43298 4.45728 4.51617 4.58911 4.62212 4.75671 4.83187 4.90089 4.99324 5.13723 5.26366 5.57959 5.65383 5.79073 6.17881 6.60024 7.13466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.513 6.513 2 C -0.106 4.106 3 Si 0.693 3.307 4 C 0.029 3.971 5 C -0.658 4.658 6 S 2.684 3.316 7 O -0.922 6.922 8 O -0.955 6.955 9 N -1.105 6.105 10 C 0.124 3.876 11 H 0.114 0.886 12 C -0.153 4.153 13 C 0.107 3.893 14 H 0.121 0.879 15 N -0.445 5.445 16 C -0.051 4.051 17 C -0.029 4.029 18 N -0.489 5.489 19 C 0.175 3.825 20 C -0.153 4.153 21 C -0.023 4.023 22 C -0.131 4.131 23 C -0.056 4.056 24 C -0.144 4.144 25 H 0.384 0.616 26 H 0.071 0.929 27 H -0.252 1.252 28 H -0.246 1.246 29 H 0.421 0.579 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.176 0.824 33 H 0.171 0.829 34 H 0.200 0.800 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.149 0.851 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 5.056 5.731 7.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.319 6.319 2 C -0.216 4.216 3 Si 0.593 3.407 4 C 0.028 3.972 5 C -0.744 4.744 6 S 2.773 3.227 7 O -0.912 6.912 8 O -0.945 6.945 9 N -0.864 5.864 10 C 0.016 3.984 11 H 0.131 0.869 12 C -0.193 4.193 13 C 0.002 3.998 14 H 0.139 0.861 15 N -0.128 5.128 16 C -0.183 4.183 17 C -0.176 4.176 18 N -0.207 5.207 19 C -0.107 4.107 20 C -0.193 4.193 21 C -0.042 4.042 22 C -0.150 4.150 23 C -0.074 4.074 24 C -0.163 4.163 25 H 0.231 0.769 26 H 0.089 0.911 27 H -0.176 1.176 28 H -0.170 1.170 29 H 0.257 0.743 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.193 0.807 33 H 0.188 0.812 34 H 0.217 0.783 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.166 0.834 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.684 4.430 3.866 6.116 hybrid contribution 0.331 0.542 0.465 0.787 sum 2.015 4.971 4.331 6.895 Atomic orbital electron populations 1.86690 1.14240 1.81777 1.49195 1.25008 0.88491 1.11736 0.96402 0.94986 0.80662 0.77445 0.87574 1.18889 0.92836 0.91529 0.93937 1.30815 1.18456 1.06062 1.19101 1.02400 0.73348 0.73831 0.73108 1.93710 1.37087 1.77991 1.82364 1.93608 1.86061 1.31204 1.83620 1.55708 1.21769 1.76188 1.32696 1.22491 0.80132 0.95678 1.00123 0.86878 1.23872 0.97338 0.96606 1.01487 1.22212 0.86914 0.96312 0.94394 0.86073 1.45300 1.06393 1.46468 1.14670 1.22768 0.82564 1.09911 1.03093 1.22389 0.99538 1.04540 0.91154 1.70355 0.98375 1.21341 1.30620 1.24996 0.99291 1.01842 0.84537 1.23940 0.94420 0.99958 1.00966 1.21118 0.91063 1.00919 0.91074 1.21424 1.00109 0.94161 0.99272 1.21485 0.94013 0.94994 0.96924 1.21164 1.01233 0.99769 0.94096 0.76854 0.91100 1.17617 1.17043 0.74289 0.89613 0.86886 0.80707 0.81169 0.78334 0.86681 0.89022 0.83356 0.84246 0.84571 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -0.37 10.56 -57.65 -0.61 -0.97 16 2 C -0.11 0.07 1.85 36.01 0.07 0.13 16 3 Si 0.69 -1.48 30.24 -169.99 -5.14 -6.62 16 4 C 0.03 0.05 5.28 -104.62 -0.55 -0.50 16 5 C -0.66 -1.17 5.85 -39.58 -0.23 -1.40 16 6 S 2.68 3.92 4.92 -107.50 -0.53 3.39 16 7 O -0.92 -3.64 15.04 -66.38 -1.00 -4.64 16 8 O -0.96 -3.87 16.76 -57.17 -0.96 -4.82 16 9 N -1.11 3.15 4.48 -4.20 -0.02 3.13 16 10 C 0.12 -0.40 3.84 -67.12 -0.26 -0.65 16 11 H 0.11 -0.30 5.85 -51.93 -0.30 -0.61 16 12 C -0.15 0.71 7.64 -25.92 -0.20 0.51 16 13 C 0.11 -0.41 4.88 -67.03 -0.33 -0.73 16 14 H 0.12 -0.66 8.14 -51.93 -0.42 -1.09 16 15 N -0.44 0.32 2.94 -110.50 -0.32 -0.01 16 16 C -0.05 0.01 11.58 -16.56 -0.19 -0.18 16 17 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 18 N -0.49 -2.03 11.25 -14.66 -0.16 -2.20 16 19 C 0.18 0.24 10.95 -90.37 -0.99 -0.75 16 20 C -0.15 0.58 7.24 -25.83 -0.19 0.39 16 21 C -0.02 -0.03 9.55 -39.58 -0.38 -0.41 16 22 C -0.13 -0.03 10.05 -39.58 -0.40 -0.43 16 23 C -0.06 -0.02 10.05 -39.58 -0.40 -0.42 16 24 C -0.14 -0.21 8.66 -39.59 -0.34 -0.55 16 25 H 0.38 -1.59 8.74 45.56 0.40 -1.19 16 26 H 0.07 -0.24 5.80 -51.93 -0.30 -0.54 16 27 H -0.25 0.04 7.11 56.52 0.40 0.44 16 28 H -0.25 -0.19 6.71 56.52 0.38 0.19 16 29 H 0.42 -2.32 8.66 -34.47 -0.30 -2.62 16 30 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 31 H 0.11 -0.77 8.14 -51.92 -0.42 -1.20 16 32 H 0.18 -0.55 8.06 -52.49 -0.42 -0.97 16 33 H 0.17 0.04 8.06 -52.49 -0.42 -0.39 16 34 H 0.20 -0.16 6.20 -52.49 -0.33 -0.48 16 35 H 0.11 -0.62 8.14 -51.93 -0.42 -1.04 16 36 H 0.09 -0.23 7.84 -51.93 -0.41 -0.64 16 37 H 0.15 0.01 7.34 -52.48 -0.39 -0.37 16 38 H 0.14 -0.29 8.06 -52.48 -0.42 -0.71 16 39 H 0.14 -0.28 8.06 -52.49 -0.42 -0.71 16 40 H 0.13 0.08 4.92 -52.48 -0.26 -0.18 16 LS Contribution 339.41 15.07 5.11 5.11 Total: 0.00 -12.99 339.41 -12.71 -25.69 By element: Atomic # 1 Polarization: -8.32 SS G_CDS: -4.48 Total: -12.80 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -4.59 Total: -5.27 kcal Atomic # 7 Polarization: 1.43 SS G_CDS: -0.51 Total: 0.92 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -2.57 Total: -10.44 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: -5.14 Total: -6.62 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -0.53 Total: 3.39 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -12.99 -12.71 -25.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15608158_2726874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.358 kcal (2) G-P(sol) polarization free energy of solvation -12.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds