Wall clock time and date at job start Mon Mar 8 2021 13:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86295 * 109.47626 * 2 1 4 4 C 1.50703 * 109.46774 * 240.00006 * 2 1 3 5 5 C 1.38216 * 119.99945 * 283.93730 * 4 2 1 6 6 S 1.76202 * 120.00118 * 359.97438 * 5 4 2 7 7 O 1.42095 * 106.40087 * 49.80571 * 6 5 4 8 8 O 1.42098 * 106.40189 * 182.72617 * 6 5 4 9 9 N 1.65606 * 107.21578 * 296.26594 * 6 5 4 10 10 C 1.46499 * 119.99906 * 296.57092 * 9 6 5 11 11 H 1.08997 * 112.85067 * 13.28203 * 10 9 6 12 12 C 1.53775 * 113.61548 * 144.48174 * 10 9 6 13 13 C 1.53780 * 87.08177 * 139.97434 * 12 10 9 14 14 H 1.08996 * 113.61485 * 220.01459 * 13 12 10 15 15 N 1.46500 * 113.60934 * 89.20241 * 13 12 10 16 16 C 1.36880 * 126.39898 * 112.88337 * 15 13 12 17 17 C 1.34670 * 106.81907 * 179.97438 * 16 15 13 18 18 N 1.34128 * 108.02249 * 359.97438 * 17 16 15 19 19 C 1.30506 * 109.25024 * 359.72524 * 18 17 16 20 20 C 1.53782 * 113.61111 * 242.08827 * 10 9 6 21 21 C 1.38255 * 119.99712 * 180.25392 * 5 4 2 22 22 C 1.38211 * 120.00265 * 359.51953 * 21 5 4 23 23 C 1.38262 * 119.99863 * 0.43888 * 22 21 5 24 24 C 1.38217 * 119.99560 * 359.81108 * 23 22 21 25 25 H 0.96703 * 114.00026 * 300.00086 * 1 2 3 26 26 H 1.09000 * 109.47065 * 120.00349 * 2 1 3 27 27 H 1.48501 * 110.00408 * 178.68310 * 3 2 1 28 28 H 1.48506 * 109.99996 * 300.00251 * 3 2 1 29 29 H 0.96999 * 119.99903 * 116.56877 * 9 6 5 30 30 H 1.08997 * 113.61773 * 254.52486 * 12 10 9 31 31 H 1.09009 * 113.61300 * 25.34761 * 12 10 9 32 32 H 1.08002 * 126.59376 * 359.95564 * 16 15 13 33 33 H 1.07999 * 125.99120 * 179.97438 * 17 16 15 34 34 H 1.07999 * 125.64455 * 180.28814 * 19 18 17 35 35 H 1.09005 * 113.61247 * 334.56700 * 20 10 9 36 36 H 1.08998 * 113.61664 * 105.46988 * 20 10 9 37 37 H 1.08004 * 119.99778 * 179.72561 * 21 5 4 38 38 H 1.08003 * 120.00470 * 180.27590 * 22 21 5 39 39 H 1.07998 * 120.00059 * 179.83540 * 23 22 21 40 40 H 1.08003 * 119.99197 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2305 5 6 1.8897 -2.0904 -1.2971 6 16 1.2502 -3.0190 0.0569 7 8 -0.0023 -2.4351 0.3879 8 8 1.4020 -4.3889 -0.2887 9 7 2.2482 -2.7497 1.3508 10 6 3.6488 -3.1759 1.2967 11 1 3.9717 -3.4418 0.2902 12 6 4.6119 -2.2202 2.0203 13 6 5.3451 -3.4717 2.5311 14 1 5.6726 -3.3933 3.5677 15 7 6.4048 -3.9381 1.6335 16 6 7.7494 -3.9279 1.8899 17 6 8.3571 -4.4425 0.8038 18 7 7.4094 -4.7589 -0.0911 19 6 6.2371 -4.4653 0.4016 20 6 4.0144 -4.2264 2.3586 21 6 2.3554 -2.7423 -2.4239 22 6 2.8532 -2.0138 -3.4877 23 6 2.8939 -0.6334 -3.4214 24 6 2.4331 0.0181 -2.2928 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5139 0.8900 27 1 3.5347 1.7702 0.0321 28 1 1.5616 2.4679 -1.2085 29 1 1.9054 -2.3097 2.1444 30 1 5.2102 -1.6089 1.3447 31 1 4.1375 -1.6376 2.8102 32 1 8.2305 -3.5747 2.7900 33 1 9.4210 -4.5769 0.6759 34 1 5.2900 -4.6159 -0.0951 35 1 3.3767 -4.1944 3.2421 36 1 4.1309 -5.2324 1.9557 37 1 2.3270 -3.8208 -2.4741 38 1 3.2128 -2.5229 -4.3697 39 1 3.2853 -0.0642 -4.2516 40 1 2.4654 1.0964 -2.2410 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15608158_2726874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:46:02 Heat of formation + Delta-G solvation = 38.997163 kcal Electronic energy + Delta-G solvation = -28052.035539 eV Core-core repulsion = 24156.473963 eV Total energy + Delta-G solvation = -3895.561576 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.22893 -40.76957 -40.11365 -38.52087 -37.43375 -36.99499 -35.00499 -33.08584 -32.57452 -32.45293 -30.26294 -27.03690 -26.88063 -25.97261 -24.58307 -22.81481 -22.55321 -22.21816 -21.21960 -20.58948 -19.21573 -18.58466 -18.37357 -18.11377 -17.57399 -17.18600 -16.85934 -16.22728 -16.10084 -15.91482 -15.55550 -15.42661 -15.24256 -14.95228 -14.84184 -14.34015 -14.17053 -13.98049 -13.91201 -13.77090 -13.61021 -13.47829 -13.29081 -13.20282 -13.11323 -12.68502 -12.38325 -12.23073 -12.15324 -11.84034 -11.70664 -10.95249 -10.68574 -10.61573 -10.55391 -10.28039 -10.20925 -9.49241 -5.01952 -0.78840 -0.42464 -0.05915 1.06247 1.15572 1.58280 1.77551 1.79482 1.88475 2.17633 2.21897 2.58870 3.10750 3.17650 3.24959 3.34682 3.56357 3.58054 3.60470 3.72943 3.81486 3.89871 3.93617 3.97342 4.01827 4.14941 4.22502 4.39710 4.41472 4.48053 4.60031 4.61409 4.67488 4.78419 4.79554 4.83379 4.90325 4.98463 5.10686 5.17604 5.31397 5.57150 5.80071 5.99653 6.24442 6.90914 7.10490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.123 4.123 3 Si 0.786 3.214 4 C 0.013 3.987 5 C -0.670 4.670 6 S 2.698 3.302 7 O -0.950 6.950 8 O -0.988 6.988 9 N -1.087 6.087 10 C 0.111 3.889 11 H 0.102 0.898 12 C -0.140 4.140 13 C 0.103 3.897 14 H 0.150 0.850 15 N -0.440 5.440 16 C -0.037 4.037 17 C -0.065 4.065 18 N -0.538 5.538 19 C 0.163 3.837 20 C -0.150 4.150 21 C -0.038 4.038 22 C -0.136 4.136 23 C -0.061 4.061 24 C -0.164 4.164 25 H 0.402 0.598 26 H 0.097 0.903 27 H -0.275 1.275 28 H -0.290 1.290 29 H 0.436 0.564 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.208 0.792 33 H 0.176 0.824 34 H 0.209 0.791 35 H 0.138 0.862 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 6.141 7.741 10.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.232 4.232 3 Si 0.690 3.310 4 C 0.012 3.988 5 C -0.756 4.756 6 S 2.788 3.212 7 O -0.940 6.940 8 O -0.978 6.978 9 N -0.850 5.850 10 C 0.003 3.997 11 H 0.119 0.881 12 C -0.180 4.180 13 C -0.001 4.001 14 H 0.168 0.832 15 N -0.122 5.122 16 C -0.170 4.170 17 C -0.212 4.212 18 N -0.257 5.257 19 C -0.119 4.119 20 C -0.190 4.190 21 C -0.057 4.057 22 C -0.155 4.155 23 C -0.078 4.078 24 C -0.182 4.182 25 H 0.253 0.747 26 H 0.114 0.886 27 H -0.202 1.202 28 H -0.218 1.218 29 H 0.276 0.724 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.225 0.775 33 H 0.194 0.806 34 H 0.225 0.775 35 H 0.156 0.844 36 H 0.094 0.906 37 H 0.169 0.831 38 H 0.178 0.822 39 H 0.177 0.823 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.899 5.508 5.926 8.310 hybrid contribution 0.268 0.211 -0.196 0.394 sum 2.167 5.719 5.730 8.381 Atomic orbital electron populations 1.86639 1.14971 1.82431 1.50751 1.25343 0.88151 1.13285 0.96444 0.94029 0.77643 0.74230 0.85106 1.19257 0.92845 0.91692 0.95032 1.30855 1.18953 1.06364 1.19433 1.01706 0.73130 0.72996 0.73397 1.93665 1.39159 1.78232 1.82902 1.93565 1.86612 1.33198 1.84391 1.55294 1.21572 1.76204 1.31944 1.22681 0.79767 0.97020 1.00214 0.88060 1.23902 0.96259 0.96061 1.01755 1.22501 0.86103 0.96431 0.95025 0.83239 1.45487 1.07036 1.45425 1.14269 1.23231 0.82630 1.07989 1.03191 1.22701 0.99975 1.06360 0.92139 1.70267 0.99811 1.23094 1.32480 1.25148 0.98988 1.02167 0.85581 1.23996 0.94845 0.98800 1.01383 1.21338 0.91474 1.01363 0.91546 1.21722 0.99709 0.94367 0.99705 1.21822 0.93430 0.95282 0.97310 1.21407 1.01931 1.00155 0.94747 0.74705 0.88584 1.20184 1.21773 0.72435 0.90713 0.83671 0.77480 0.80636 0.77506 0.84402 0.90647 0.83077 0.82168 0.82324 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.83 10.56 -127.55 -1.35 -2.17 16 2 C -0.12 0.18 1.85 71.24 0.13 0.31 16 3 Si 0.79 -3.62 30.24 68.60 2.07 -1.54 16 4 C 0.01 0.05 5.28 -19.87 -0.10 -0.05 16 5 C -0.67 -3.15 5.85 22.27 0.13 -3.02 16 6 S 2.70 10.16 4.92 -56.49 -0.28 9.88 16 7 O -0.95 -8.20 15.04 -119.20 -1.79 -10.00 16 8 O -0.99 -9.57 16.76 -128.00 -2.15 -11.71 16 9 N -1.09 6.88 4.48 -167.21 -0.75 6.13 16 10 C 0.11 -0.78 3.84 45.52 0.17 -0.60 16 11 H 0.10 -0.45 5.85 -2.39 -0.01 -0.46 16 12 C -0.14 1.58 7.64 31.12 0.24 1.82 16 13 C 0.10 -0.99 4.88 45.57 0.22 -0.77 16 14 H 0.15 -2.20 8.14 -2.39 -0.02 -2.22 16 15 N -0.44 0.87 2.94 -503.51 -1.48 -0.61 16 16 C -0.04 0.04 11.58 83.09 0.96 1.00 16 17 C -0.07 -0.34 11.87 83.52 0.99 0.65 16 18 N -0.54 -5.43 11.25 -200.31 -2.25 -7.68 16 19 C 0.16 0.64 10.95 180.26 1.97 2.61 16 20 C -0.15 1.33 7.24 31.18 0.23 1.55 16 21 C -0.04 -0.15 9.55 22.27 0.21 0.06 16 22 C -0.14 -0.18 10.05 22.27 0.22 0.05 16 23 C -0.06 -0.07 10.05 22.27 0.22 0.15 16 24 C -0.16 -0.61 8.66 22.27 0.19 -0.41 16 25 H 0.40 -3.50 8.74 -74.06 -0.65 -4.14 16 26 H 0.10 -0.74 5.80 -2.39 -0.01 -0.75 16 27 H -0.28 0.22 7.11 99.48 0.71 0.92 16 28 H -0.29 -0.74 6.71 99.48 0.67 -0.07 16 29 H 0.44 -5.55 8.66 -96.74 -0.84 -6.39 16 30 H 0.07 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.15 -2.55 8.14 -2.38 -0.02 -2.57 16 32 H 0.21 -1.79 8.06 -2.91 -0.02 -1.81 16 33 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 34 H 0.21 0.08 6.20 -2.91 -0.02 0.06 16 35 H 0.14 -1.84 8.14 -2.38 -0.02 -1.86 16 36 H 0.07 -0.36 7.84 -2.39 -0.02 -0.38 16 37 H 0.15 0.35 7.34 -2.91 -0.02 0.33 16 38 H 0.16 -0.62 8.06 -2.91 -0.02 -0.65 16 39 H 0.16 -0.69 8.06 -2.91 -0.02 -0.71 16 40 H 0.13 0.29 4.92 -2.91 -0.01 0.28 16 Total: 0.00 -32.54 339.41 -2.55 -35.10 By element: Atomic # 1 Polarization: -20.35 SS G_CDS: -0.38 Total: -20.73 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 5.80 Total: 3.35 kcal Atomic # 7 Polarization: 2.31 SS G_CDS: -4.48 Total: -2.17 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -5.29 Total: -23.88 kcal Atomic # 14 Polarization: -3.62 SS G_CDS: 2.07 Total: -1.54 kcal Atomic # 16 Polarization: 10.16 SS G_CDS: -0.28 Total: 9.88 kcal Total: -32.54 -2.55 -35.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15608158_2726874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.095 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds