Wall clock time and date at job start Mon Mar 8 2021 09:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30839 * 125.96133 * 2 1 4 4 C 1.33238 * 109.83031 * 180.12442 * 3 2 1 5 5 C 1.50695 * 125.53034 * 179.85201 * 4 3 2 6 6 H 1.08999 * 109.47065 * 359.71646 * 5 4 3 7 7 C 1.53002 * 109.47158 * 119.71162 * 5 4 3 8 8 C 1.53004 * 109.47214 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47283 * 300.00308 * 8 7 5 10 10 H 1.08999 * 109.47202 * 300.00058 * 9 8 7 11 11 N 1.46490 * 109.47063 * 179.97438 * 9 8 7 12 12 S 1.65602 * 119.99954 * 144.29882 * 11 9 8 13 13 O 1.42103 * 106.40375 * 312.98402 * 12 11 9 14 14 O 1.42109 * 106.40397 * 180.02562 * 12 11 9 15 15 C 1.76201 * 107.21825 * 66.52633 * 12 11 9 16 16 C 1.38216 * 120.00100 * 65.62864 * 15 12 11 17 17 C 1.50697 * 119.99839 * 359.97438 * 16 15 12 18 18 O 1.42906 * 109.47108 * 284.62468 * 17 16 15 19 19 Si 1.86302 * 109.46869 * 164.62940 * 17 16 15 20 20 C 1.38258 * 119.99610 * 180.02562 * 16 15 12 21 21 C 1.38208 * 120.00328 * 359.95091 * 20 16 15 22 22 C 1.38258 * 119.99922 * 359.79565 * 21 20 16 23 23 C 1.38211 * 119.99925 * 0.48521 * 22 21 20 24 24 C 1.53006 * 109.46918 * 59.99787 * 9 8 7 25 25 C 1.52998 * 109.47323 * 239.71460 * 5 4 3 26 26 N 1.30718 * 108.94526 * 359.58496 * 4 3 2 27 27 N 1.34428 * 125.96488 * 179.66679 * 2 1 3 28 28 H 1.08995 * 109.47031 * 270.31177 * 1 2 3 29 29 H 1.08998 * 109.46733 * 30.30869 * 1 2 3 30 30 H 1.08992 * 109.46974 * 150.30371 * 1 2 3 31 31 H 1.09006 * 109.46850 * 60.00655 * 7 5 4 32 32 H 1.08998 * 109.47343 * 300.00510 * 7 5 4 33 33 H 1.08998 * 109.46897 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.46689 * 60.00542 * 8 7 5 35 35 H 0.96998 * 120.00635 * 324.29630 * 11 9 8 36 36 H 1.09001 * 109.47410 * 44.62362 * 17 16 15 37 37 H 0.96698 * 113.99709 * 300.00619 * 18 17 16 38 38 H 1.48493 * 110.00110 * 58.67879 * 19 17 16 39 39 H 1.48496 * 109.99747 * 180.02562 * 19 17 16 40 40 H 1.08001 * 119.99662 * 179.97438 * 20 16 15 41 41 H 1.07998 * 119.99955 * 180.02562 * 21 20 16 42 42 H 1.08004 * 119.99978 * 180.25460 * 22 21 20 43 43 H 1.08005 * 119.99764 * 179.77131 * 23 22 21 44 44 H 1.08999 * 109.46963 * 60.00124 * 24 9 8 45 45 H 1.09005 * 109.46642 * 179.97438 * 24 9 8 46 46 H 1.08999 * 109.47202 * 300.00102 * 25 5 4 47 47 H 1.08998 * 109.47324 * 60.00097 * 25 5 4 48 48 H 0.97002 * 126.82073 * 0.06457 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5553 0.6888 -0.0027 5 6 4.7373 1.6236 -0.0068 6 1 4.3848 2.6550 -0.0122 7 6 5.5839 1.3807 1.2443 8 6 6.7836 2.3302 1.2405 9 6 7.6320 2.0752 -0.0069 10 1 7.9849 1.0439 -0.0017 11 7 8.7804 2.9847 -0.0108 12 16 10.2414 2.4712 -0.5974 13 8 10.4818 1.1970 -0.0161 14 8 11.1352 3.5680 -0.4644 15 6 10.0427 2.1996 -2.3270 16 6 9.7764 3.2639 -3.1676 17 6 9.6554 4.6566 -2.6047 18 8 8.3981 4.7940 -1.9396 19 14 9.7641 5.8977 -3.9899 20 6 9.6200 3.0506 -4.5246 21 6 9.7309 1.7734 -5.0407 22 6 10.0024 0.7094 -4.2006 23 6 10.1531 0.9218 -2.8432 24 6 6.7853 2.3181 -1.2579 25 6 5.5855 1.3679 -1.2542 26 7 3.6195 -0.6167 0.0045 27 7 2.2965 -1.0880 0.0063 28 1 -0.3633 0.0056 1.0276 29 1 -0.3633 0.8872 -0.5186 30 1 -0.3633 -0.8926 -0.5091 31 1 5.9365 0.3493 1.2497 32 1 4.9796 1.5628 2.1330 33 1 7.3870 2.1568 2.1316 34 1 6.4307 3.3616 1.2353 35 1 8.6850 3.8878 0.3302 36 1 10.4633 4.8330 -1.8945 37 1 7.6324 4.6502 -2.5124 38 1 8.6871 5.6480 -4.9812 39 1 9.6467 7.2752 -3.4478 40 1 9.4115 3.8823 -5.1814 41 1 9.6091 1.6069 -6.1008 42 1 10.0932 -0.2881 -4.6045 43 1 10.3615 0.0901 -2.1864 44 1 6.4324 3.3494 -1.2632 45 1 7.3899 2.1368 -2.1466 46 1 5.9380 0.3365 -1.2487 47 1 4.9824 1.5410 -2.1454 48 1 2.0094 -2.0146 0.0108 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15608176_2726874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:02:06 Heat of formation + Delta-G solvation = 5.363585 kcal Electronic energy + Delta-G solvation = -34374.008035 eV Core-core repulsion = 29944.949230 eV Total energy + Delta-G solvation = -4429.058805 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.140 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.15811 -40.79363 -39.91704 -38.37880 -37.59137 -36.74682 -35.81906 -33.52791 -33.32729 -32.87406 -32.45137 -31.82518 -30.16248 -28.64456 -26.97559 -24.57316 -24.42535 -23.71889 -22.86457 -22.35112 -21.43936 -20.82544 -20.32460 -19.22700 -18.85815 -18.34969 -18.06701 -17.55716 -16.88444 -16.72628 -16.68857 -16.16702 -15.95466 -15.85639 -15.51209 -15.36998 -15.22440 -15.06069 -14.84647 -14.31097 -14.25314 -14.17215 -14.03382 -13.87161 -13.74570 -13.55061 -13.23236 -13.11037 -13.01001 -12.97635 -12.86305 -12.82992 -12.44388 -12.22142 -12.12662 -12.01872 -11.94132 -11.74884 -11.41202 -11.37093 -10.97964 -10.96517 -10.72239 -10.50220 -10.40528 -10.26332 -10.09350 -5.01024 -0.53497 -0.25975 0.09005 0.60606 1.17412 1.49550 1.64580 1.88525 1.88672 2.01558 2.34896 2.78843 2.89764 3.27765 3.32058 3.49910 3.51698 3.62805 3.68073 3.75113 3.77607 3.84274 4.03755 4.07870 4.14313 4.18505 4.21880 4.31327 4.32115 4.39238 4.44900 4.48734 4.50523 4.56708 4.57832 4.69865 4.74983 4.77738 4.86369 4.97015 5.03059 5.07962 5.09902 5.15019 5.19364 5.22708 5.28525 5.30265 5.41092 5.52993 5.67796 6.04872 6.14362 6.24720 7.13365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.283 3.717 3 N -0.540 5.540 4 C 0.235 3.765 5 C 0.007 3.993 6 H 0.100 0.900 7 C -0.108 4.108 8 C -0.119 4.119 9 C 0.153 3.847 10 H 0.092 0.908 11 N -1.095 6.095 12 S 2.697 3.303 13 O -0.960 6.960 14 O -0.957 6.957 15 C -0.656 4.656 16 C -0.010 4.010 17 C -0.132 4.132 18 O -0.516 6.516 19 Si 0.703 3.297 20 C -0.145 4.145 21 C -0.058 4.058 22 C -0.134 4.134 23 C -0.020 4.020 24 C -0.134 4.134 25 C -0.108 4.108 26 N -0.310 5.310 27 N -0.484 5.484 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.424 0.576 36 H 0.154 0.846 37 H 0.374 0.626 38 H -0.258 1.258 39 H -0.251 1.251 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.145 0.855 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -1.624 -4.018 6.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.005 3.995 3 N -0.269 5.269 4 C -0.047 4.047 5 C -0.014 4.014 6 H 0.118 0.882 7 C -0.148 4.148 8 C -0.158 4.158 9 C 0.045 3.955 10 H 0.110 0.890 11 N -0.854 5.854 12 S 2.786 3.214 13 O -0.950 6.950 14 O -0.947 6.947 15 C -0.742 4.742 16 C -0.011 4.011 17 C -0.241 4.241 18 O -0.322 6.322 19 Si 0.604 3.396 20 C -0.164 4.164 21 C -0.076 4.076 22 C -0.152 4.152 23 C -0.040 4.040 24 C -0.173 4.173 25 C -0.147 4.147 26 N -0.139 5.139 27 N -0.202 5.202 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.260 0.740 36 H 0.172 0.828 37 H 0.223 0.777 38 H -0.184 1.184 39 H -0.175 1.175 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.163 0.837 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -3.712 -1.170 -3.521 5.248 hybrid contribution -1.994 -0.910 -0.509 2.250 sum -5.706 -2.080 -4.030 7.288 Atomic orbital electron populations 1.20427 0.83520 1.05170 1.04782 1.24447 0.96707 0.82864 0.95467 1.70398 1.01431 1.29540 1.25532 1.24203 0.93094 0.90125 0.97318 1.19626 0.88505 0.96787 0.96529 0.88184 1.21554 0.95802 1.00673 0.96736 1.21767 0.96034 1.00536 0.97445 1.20829 0.85852 0.93220 0.95555 0.88999 1.55345 1.27062 1.24993 1.78042 1.01792 0.72638 0.73462 0.73511 1.93591 1.83842 1.42421 1.75137 1.93551 1.61641 1.53505 1.86028 1.30830 1.17096 0.99752 1.26519 1.19872 0.93293 0.94367 0.93607 1.25785 0.90609 0.98225 1.09518 1.86675 1.14148 1.92888 1.38530 0.94339 0.89913 0.77825 0.77518 1.21322 1.02221 0.98124 0.94687 1.21469 0.93369 0.92369 1.00367 1.21390 1.00525 0.99813 0.93517 1.21075 0.91554 0.95048 0.96290 1.22130 0.96434 1.00673 0.98091 1.21551 0.95900 1.00583 0.96699 1.77994 0.96539 1.12391 1.26932 1.48036 1.04394 1.10138 1.57656 0.88815 0.88228 0.89748 0.90688 0.91056 0.90425 0.90588 0.73978 0.82840 0.77736 1.18363 1.17531 0.84656 0.84835 0.84727 0.83735 0.90303 0.91273 0.90877 0.91401 0.71385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.28 10.51 36.01 0.38 0.66 16 2 C 0.28 0.18 8.24 -155.69 -1.28 -1.11 16 3 N -0.54 -1.77 11.19 -8.16 -0.09 -1.86 16 4 C 0.24 0.66 6.65 -156.85 -1.04 -0.39 16 5 C 0.01 0.00 2.66 -91.77 -0.24 -0.24 16 6 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 7 C -0.11 0.03 5.19 -26.73 -0.14 -0.11 16 8 C -0.12 0.15 5.46 -26.73 -0.15 0.01 16 9 C 0.15 -0.13 2.81 -67.93 -0.19 -0.32 16 10 H 0.09 -0.01 7.45 -51.93 -0.39 -0.40 16 11 N -1.09 0.41 3.86 -4.89 -0.02 0.39 16 12 S 2.70 6.19 5.08 -107.50 -0.55 5.64 16 13 O -0.96 -4.78 16.25 -57.17 -0.93 -5.71 16 14 O -0.96 -4.43 15.44 -57.17 -0.88 -5.32 16 15 C -0.66 -0.60 4.90 -39.58 -0.19 -0.79 16 16 C -0.01 0.00 5.04 -104.62 -0.53 -0.53 16 17 C -0.13 0.05 2.02 36.00 0.07 0.13 16 18 O -0.52 0.74 9.50 -35.23 -0.33 0.41 16 19 Si 0.70 -0.91 30.26 -169.99 -5.14 -6.06 16 20 C -0.15 0.17 8.66 -39.58 -0.34 -0.17 16 21 C -0.06 0.09 10.05 -39.58 -0.40 -0.31 16 22 C -0.13 0.13 10.05 -39.58 -0.40 -0.26 16 23 C -0.02 -0.01 9.55 -39.58 -0.38 -0.39 16 24 C -0.13 0.24 4.63 -26.70 -0.12 0.12 16 25 C -0.11 0.06 5.19 -26.70 -0.14 -0.08 16 26 N -0.31 -0.93 12.80 32.42 0.41 -0.52 16 27 N -0.48 -0.18 7.45 32.62 0.24 0.06 16 28 H 0.09 -0.41 8.14 -51.93 -0.42 -0.84 16 29 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 30 H 0.08 -0.47 8.14 -51.93 -0.42 -0.90 16 31 H 0.07 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 34 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 35 H 0.42 -0.60 8.26 -34.47 -0.28 -0.88 16 36 H 0.15 0.13 5.33 -51.93 -0.28 -0.14 16 37 H 0.37 -1.41 7.85 45.56 0.36 -1.05 16 38 H -0.26 0.10 6.67 56.52 0.38 0.48 16 39 H -0.25 -0.46 7.11 56.52 0.40 -0.06 16 40 H 0.14 -0.36 4.87 -52.49 -0.26 -0.61 16 41 H 0.13 -0.51 8.06 -52.49 -0.42 -0.93 16 42 H 0.13 -0.39 8.06 -52.48 -0.42 -0.82 16 43 H 0.14 -0.01 7.33 -52.48 -0.38 -0.39 16 44 H 0.08 -0.21 7.09 -51.93 -0.37 -0.58 16 45 H 0.07 -0.11 6.88 -51.93 -0.36 -0.47 16 46 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 47 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 48 H 0.44 -1.31 8.96 -182.34 -1.63 -2.94 16 LS Contribution 388.75 15.07 5.86 5.86 Total: 0.00 -10.90 388.75 -14.41 -25.31 By element: Atomic # 1 Polarization: -6.54 SS G_CDS: -7.89 Total: -14.43 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -5.09 Total: -3.78 kcal Atomic # 7 Polarization: -2.47 SS G_CDS: 0.55 Total: -1.93 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -2.15 Total: -10.62 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: -5.14 Total: -6.06 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -0.55 Total: 5.64 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -10.90 -14.41 -25.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15608176_2726874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.677 kcal (2) G-P(sol) polarization free energy of solvation -10.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds