Wall clock time and date at job start Mon Mar 8 2021 10:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34237 * 116.99597 * 2 1 4 4 O 1.20824 * 119.99933 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99781 * 179.97438 * 3 2 1 6 6 C 1.53895 * 113.59676 * 180.02562 * 5 3 2 7 7 C 1.53140 * 86.89870 * 139.53940 * 6 5 3 8 8 C 1.53149 * 87.72918 * 334.92463 * 7 6 5 9 9 C 1.53750 * 114.91535 * 218.68509 * 7 6 5 10 10 C 1.55300 * 102.82942 * 208.23113 * 9 7 6 11 11 C 1.54965 * 101.66406 * 34.75530 * 10 9 7 12 12 N 1.46384 * 115.37645 * 92.02547 * 7 6 5 13 13 S 1.65602 * 125.80257 * 308.72510 * 12 7 6 14 14 O 1.42094 * 106.40114 * 177.41974 * 13 12 7 15 15 O 1.42096 * 106.40051 * 44.49589 * 13 12 7 16 16 C 1.76202 * 107.21783 * 290.95790 * 13 12 7 17 17 C 1.38209 * 119.99966 * 295.67873 * 16 13 12 18 18 C 1.50706 * 120.00214 * 359.97438 * 17 16 13 19 19 O 1.42891 * 109.47157 * 284.20952 * 18 17 16 20 20 Si 1.86295 * 109.47151 * 164.20556 * 18 17 16 21 21 C 1.38255 * 120.00099 * 179.72732 * 17 16 13 22 22 C 1.38215 * 120.00174 * 0.24761 * 21 17 16 23 23 C 1.38268 * 119.99593 * 0.02562 * 22 21 17 24 24 C 1.38209 * 119.99737 * 359.95601 * 23 22 21 25 25 H 1.08993 * 109.47518 * 299.99570 * 1 2 3 26 26 H 1.09005 * 109.47018 * 59.99957 * 1 2 3 27 27 H 1.08999 * 109.46725 * 179.97438 * 1 2 3 28 28 H 1.09005 * 112.83802 * 48.86677 * 5 3 2 29 29 H 1.09001 * 113.64478 * 25.04126 * 6 5 3 30 30 H 1.09000 * 113.73128 * 254.05194 * 6 5 3 31 31 H 1.09000 * 113.64381 * 139.57698 * 8 7 6 32 32 H 1.09002 * 113.64243 * 270.57634 * 8 7 6 33 33 H 1.08999 * 110.90900 * 89.79798 * 9 7 6 34 34 H 1.08998 * 110.67619 * 326.55815 * 9 7 6 35 35 H 1.08999 * 110.98686 * 276.66189 * 10 9 7 36 36 H 1.08998 * 110.98963 * 152.84205 * 10 9 7 37 37 H 1.09004 * 110.36161 * 204.48215 * 11 10 9 38 38 H 1.09002 * 110.45610 * 82.21725 * 11 10 9 39 39 H 1.09000 * 109.46481 * 44.20826 * 18 17 16 40 40 H 0.96701 * 114.00360 * 299.99182 * 19 18 17 41 41 H 1.48494 * 109.99979 * 180.02562 * 20 18 17 42 42 H 1.48504 * 109.99972 * 301.32138 * 20 18 17 43 43 H 1.08003 * 120.00521 * 180.27263 * 21 17 16 44 44 H 1.07996 * 120.00744 * 180.02562 * 22 21 17 45 45 H 1.07989 * 119.99806 * 179.97438 * 23 22 21 46 46 H 1.08003 * 119.99704 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.1076 2.7156 0.0011 7 6 5.1671 2.2286 0.9937 8 6 4.1908 1.1203 1.3986 9 6 5.5099 3.2230 2.1151 10 6 6.9807 2.8618 2.4587 11 6 7.5388 2.4650 1.0685 12 7 6.4227 1.7706 0.3966 13 16 6.5664 0.6665 -0.8293 14 8 7.9531 0.5739 -1.1254 15 8 5.5862 1.0127 -1.7980 16 6 6.0910 -0.9004 -0.1784 17 6 6.8355 -1.4851 0.8285 18 6 8.0544 -0.7830 1.3693 19 8 9.1292 -0.9075 0.4361 20 14 8.5476 -1.5555 2.9913 21 6 6.4593 -2.7119 1.3431 22 6 5.3414 -3.3560 0.8472 23 6 4.5998 -2.7736 -0.1641 24 6 4.9758 -1.5470 -0.6782 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0236 0.6371 -0.7557 29 1 3.4143 3.4429 0.4237 30 1 4.5189 3.0300 -0.9581 31 1 4.6687 0.1539 1.5593 32 1 3.5207 1.4031 2.2104 33 1 4.8631 3.0725 2.9795 34 1 5.4381 4.2491 1.7548 35 1 7.0247 2.0214 3.1514 36 1 7.5111 3.7252 2.8602 37 1 8.3909 1.7944 1.1793 38 1 7.8266 3.3531 0.5059 39 1 7.8274 0.2719 1.5235 40 1 9.3853 -1.8214 0.2507 41 1 9.7481 -0.8715 3.5354 42 1 7.4265 -1.4608 3.9606 43 1 7.0385 -3.1669 2.1330 44 1 5.0472 -4.3141 1.2494 45 1 3.7267 -3.2770 -0.5519 46 1 4.3963 -1.0919 -1.4678 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15736544_2726874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:55 Heat of formation + Delta-G solvation = -96.500309 kcal Electronic energy + Delta-G solvation = -35126.624946 eV Core-core repulsion = 30691.363718 eV Total energy + Delta-G solvation = -4435.261228 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.122 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.36203 -40.92669 -40.57664 -38.83005 -37.70196 -37.43838 -37.07197 -36.40632 -32.85397 -32.44368 -32.12039 -29.88328 -28.22362 -27.09290 -26.91430 -25.12059 -24.46554 -23.08147 -22.84110 -21.93822 -21.21725 -19.93115 -19.15603 -18.77047 -18.24552 -18.07979 -17.61590 -17.52670 -17.18183 -17.03226 -16.50153 -16.25966 -15.90450 -15.80344 -15.48258 -15.14910 -15.02965 -14.77578 -14.50403 -14.38086 -14.27980 -14.11611 -14.05284 -13.60398 -13.51907 -13.40055 -13.30520 -13.22075 -13.00196 -12.84633 -12.76108 -12.63223 -12.32157 -12.20155 -12.11498 -12.07710 -11.89565 -11.64712 -11.50666 -11.48840 -11.28977 -10.48240 -10.43609 -10.21336 -10.03602 -5.03897 -0.89723 -0.30011 0.14548 0.98629 1.19846 1.62748 1.63894 1.68236 1.93653 2.36668 2.54489 3.00028 3.08264 3.16432 3.30937 3.35749 3.46718 3.54820 3.72055 3.75364 3.90478 3.99066 4.02911 4.12358 4.16277 4.19744 4.23861 4.26069 4.28420 4.33351 4.43637 4.51043 4.55532 4.57664 4.65476 4.69954 4.76744 4.80483 4.85082 4.90220 4.96246 4.98333 4.98972 5.09490 5.18705 5.24792 5.28050 5.31448 5.42695 5.76274 6.58241 6.77988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.359 6.359 3 C 0.477 3.523 4 O -0.533 6.533 5 C -0.147 4.147 6 C -0.130 4.130 7 C 0.161 3.839 8 C -0.132 4.132 9 C -0.106 4.106 10 C -0.126 4.126 11 C 0.101 3.899 12 N -0.991 5.991 13 S 2.689 3.311 14 O -0.948 6.948 15 O -0.983 6.983 16 C -0.666 4.666 17 C -0.024 4.024 18 C -0.136 4.136 19 O -0.525 6.525 20 Si 0.782 3.218 21 C -0.133 4.133 22 C -0.048 4.048 23 C -0.129 4.129 24 C -0.039 4.039 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.389 0.611 41 H -0.288 1.288 42 H -0.265 1.265 43 H 0.167 0.833 44 H 0.171 0.829 45 H 0.156 0.844 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 -6.687 7.508 10.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.275 6.275 3 C 0.321 3.679 4 O -0.422 6.422 5 C -0.166 4.166 6 C -0.169 4.169 7 C 0.072 3.928 8 C -0.170 4.170 9 C -0.145 4.145 10 C -0.165 4.165 11 C -0.022 4.022 12 N -0.828 5.828 13 S 2.785 3.215 14 O -0.939 6.939 15 O -0.973 6.973 16 C -0.756 4.756 17 C -0.026 4.026 18 C -0.244 4.244 19 O -0.332 6.332 20 Si 0.683 3.317 21 C -0.151 4.151 22 C -0.065 4.065 23 C -0.148 4.148 24 C -0.058 4.058 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.133 0.867 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.238 0.762 41 H -0.215 1.215 42 H -0.191 1.191 43 H 0.184 0.816 44 H 0.188 0.812 45 H 0.173 0.827 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.372 -5.498 7.394 9.221 hybrid contribution -0.975 0.251 -0.730 1.244 sum -1.347 -5.247 6.663 8.587 Atomic orbital electron populations 1.23575 0.74871 1.05829 1.02494 1.86511 1.24856 1.32659 1.83473 1.23680 0.91810 0.81318 0.71049 1.90645 1.67590 1.37312 1.46664 1.23333 0.87785 1.02802 1.02708 1.23472 0.97536 0.94680 1.01164 1.21206 0.82459 0.95105 0.93983 1.23632 0.97762 1.00902 0.94745 1.22543 0.97103 0.98454 0.96428 1.22888 0.95677 1.03282 0.94653 1.22509 0.88182 0.97203 0.94334 1.58296 1.13408 1.56087 1.55021 1.01750 0.73144 0.73776 0.72787 1.93669 1.31411 1.86530 1.82258 1.93506 1.62346 1.83540 1.57958 1.30416 1.08250 1.23795 1.13154 1.20103 0.94306 0.95517 0.92637 1.26107 0.87109 1.05184 1.06038 1.86803 1.49430 1.33094 1.63857 0.93549 0.78367 0.88549 0.71199 1.21462 0.98581 0.93945 1.01103 1.21927 0.91972 0.99920 0.92730 1.21653 1.01157 0.94720 0.97266 1.21108 0.92410 0.95457 0.96852 0.91713 0.92357 0.84920 0.84703 0.86738 0.90373 0.88805 0.85954 0.87827 0.88956 0.90033 0.87458 0.89762 0.90097 0.87120 0.76228 1.21479 1.19073 0.81601 0.81172 0.82653 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.68 10.57 -51.48 -0.54 -2.22 16 3 C 0.48 3.82 7.48 71.23 0.53 4.35 16 4 O -0.53 -6.94 15.64 21.97 0.34 -6.60 16 5 C -0.15 -0.78 3.36 -10.94 -0.04 -0.81 16 6 C -0.13 -0.62 6.27 30.94 0.19 -0.43 16 7 C 0.16 0.07 1.44 3.97 0.01 0.07 16 8 C -0.13 0.05 6.50 30.95 0.20 0.25 16 9 C -0.11 0.52 6.30 31.64 0.20 0.72 16 10 C -0.13 0.71 7.09 32.06 0.23 0.94 16 11 C 0.10 -0.01 5.92 86.84 0.51 0.50 16 12 N -0.99 -3.13 2.89 -464.26 -1.34 -4.48 16 13 S 2.69 23.06 4.45 -56.49 -0.25 22.81 16 14 O -0.95 -13.30 14.31 -119.14 -1.70 -15.00 16 15 O -0.98 -12.74 12.83 -128.00 -1.64 -14.38 16 16 C -0.67 -2.29 3.68 22.27 0.08 -2.21 16 17 C -0.02 0.01 5.14 -19.87 -0.10 -0.09 16 18 C -0.14 0.02 1.85 71.24 0.13 0.15 16 19 O -0.53 -1.64 10.53 -127.39 -1.34 -2.98 16 20 Si 0.78 -3.93 29.93 68.60 2.05 -1.88 16 21 C -0.13 0.82 8.66 22.27 0.19 1.02 16 22 C -0.05 0.35 10.05 22.27 0.22 0.58 16 23 C -0.13 0.50 10.05 22.27 0.22 0.73 16 24 C -0.04 -0.06 8.26 22.27 0.18 0.12 16 25 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 26 H 0.06 0.07 8.13 -2.38 -0.02 0.05 16 27 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H 0.14 0.92 2.30 -2.38 -0.01 0.91 16 29 H 0.11 0.45 7.41 -2.39 -0.02 0.43 16 30 H 0.08 0.65 7.34 -2.39 -0.02 0.63 16 31 H 0.09 -0.13 6.30 -2.39 -0.02 -0.14 16 32 H 0.12 -0.42 7.88 -2.39 -0.02 -0.44 16 33 H 0.10 -0.82 7.79 -2.39 -0.02 -0.84 16 34 H 0.09 -0.52 8.11 -2.39 -0.02 -0.54 16 35 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H 0.11 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H 0.08 0.09 6.17 -2.39 -0.01 0.07 16 38 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.11 0.09 3.24 -2.39 -0.01 0.08 16 40 H 0.39 -2.06 8.70 -74.06 -0.64 -2.71 16 41 H -0.29 -0.56 7.11 99.48 0.71 0.15 16 42 H -0.27 0.71 7.11 99.48 0.71 1.41 16 43 H 0.17 -2.09 5.15 -2.91 -0.01 -2.11 16 44 H 0.17 -2.38 8.06 -2.91 -0.02 -2.40 16 45 H 0.16 -1.25 8.06 -2.92 -0.02 -1.27 16 46 H 0.13 0.38 6.40 -2.91 -0.02 0.36 16 Total: 0.00 -26.55 359.70 -0.02 -26.57 By element: Atomic # 1 Polarization: -9.37 SS G_CDS: 0.44 Total: -8.93 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 3.97 Total: 7.08 kcal Atomic # 7 Polarization: -3.13 SS G_CDS: -1.34 Total: -4.48 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -4.89 Total: -41.18 kcal Atomic # 14 Polarization: -3.93 SS G_CDS: 2.05 Total: -1.88 kcal Atomic # 16 Polarization: 23.06 SS G_CDS: -0.25 Total: 22.81 kcal Total: -26.55 -0.02 -26.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15736544_2726874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.926 kcal (2) G-P(sol) polarization free energy of solvation -26.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds