Wall clock time and date at job start Mon Mar 8 2021 10:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33389 * 125.20698 * 2 1 4 4 C 1.50703 * 122.53624 * 0.06401 * 3 2 1 5 5 O 1.42907 * 109.46844 * 308.08293 * 4 3 2 6 6 Si 1.86296 * 109.47454 * 68.08521 * 4 3 2 7 7 C 1.38418 * 114.92548 * 180.02562 * 3 2 1 8 8 S 1.76201 * 122.54320 * 179.97438 * 7 3 2 9 9 O 1.42098 * 106.40579 * 161.64760 * 8 7 3 10 10 O 1.42103 * 106.39802 * 28.73021 * 8 7 3 11 11 N 1.65600 * 107.21847 * 275.19041 * 8 7 3 12 12 C 1.46499 * 120.00210 * 64.99590 * 11 8 7 13 13 H 1.09007 * 109.47327 * 335.00505 * 12 11 8 14 14 C 1.53007 * 109.47040 * 94.99880 * 12 11 8 15 15 C 1.52997 * 109.46862 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47023 * 299.99716 * 15 14 12 17 17 H 1.08999 * 109.47246 * 300.00316 * 16 15 14 18 18 O 1.42900 * 109.47029 * 180.02562 * 16 15 14 19 19 C 1.42909 * 113.99878 * 124.27352 * 18 16 15 20 20 C 1.52998 * 109.46540 * 57.53821 * 19 18 16 21 21 C 1.53002 * 109.46936 * 177.53508 * 19 18 16 22 22 C 1.52998 * 109.47028 * 297.54021 * 19 18 16 23 23 C 1.52997 * 109.47090 * 60.00494 * 16 15 14 24 24 C 1.52996 * 109.47433 * 215.00103 * 12 11 8 25 25 C 1.33393 * 114.91945 * 0.25502 * 7 3 2 26 26 C 1.50702 * 125.20243 * 179.75254 * 25 7 3 27 27 S 1.75882 * 109.59272 * 359.62750 * 25 7 3 28 28 H 1.09002 * 109.47237 * 84.58209 * 1 2 3 29 29 H 1.09002 * 109.47085 * 204.58120 * 1 2 3 30 30 H 1.09000 * 109.47097 * 324.58191 * 1 2 3 31 31 H 1.08994 * 109.46988 * 188.09077 * 4 3 2 32 32 H 0.96698 * 113.99506 * 67.45726 * 5 4 3 33 33 H 1.48496 * 110.00289 * 63.69037 * 6 4 3 34 34 H 1.48507 * 109.99947 * 185.01050 * 6 4 3 35 35 H 0.96998 * 119.99940 * 244.99549 * 11 8 7 36 36 H 1.08997 * 109.46653 * 60.00107 * 14 12 11 37 37 H 1.09008 * 109.47150 * 300.00005 * 14 12 11 38 38 H 1.09007 * 109.46737 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.47693 * 60.00384 * 15 14 12 40 40 H 1.08992 * 109.47423 * 55.35898 * 20 19 18 41 41 H 1.09004 * 109.46585 * 175.35508 * 20 19 18 42 42 H 1.08997 * 109.47636 * 295.35271 * 20 19 18 43 43 H 1.08999 * 109.47081 * 60.00307 * 21 19 18 44 44 H 1.09005 * 109.46683 * 179.97438 * 21 19 18 45 45 H 1.08998 * 109.47205 * 300.00104 * 21 19 18 46 46 H 1.08996 * 109.47808 * 62.02677 * 22 19 18 47 47 H 1.09003 * 109.46763 * 182.02947 * 22 19 18 48 48 H 1.08999 * 109.46786 * 302.02197 * 22 19 18 49 49 H 1.08995 * 109.47405 * 179.97438 * 23 16 15 50 50 H 1.08999 * 109.47221 * 59.99807 * 23 16 15 51 51 H 1.08996 * 109.46799 * 59.99830 * 24 12 11 52 52 H 1.08999 * 109.46921 * 299.99900 * 24 12 11 53 53 H 1.09002 * 109.47199 * 83.90253 * 26 25 7 54 54 H 1.08994 * 109.46932 * 203.90257 * 26 25 7 55 55 H 1.09002 * 109.47313 * 323.90672 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4846 0.0014 5 8 0.7547 2.6114 -1.0582 6 14 0.8647 2.8101 1.6319 7 6 3.6379 0.8428 -0.0006 8 16 4.8357 2.1352 -0.0013 9 8 6.0576 1.5501 0.4274 10 8 4.2319 3.2421 0.6540 11 7 5.0632 2.5917 -1.5768 12 6 3.9653 3.2061 -2.3274 13 1 3.0128 2.8947 -1.8983 14 6 4.0852 4.7295 -2.2511 15 6 2.9382 5.3711 -3.0344 16 6 3.0080 4.9266 -4.4967 17 1 3.9602 5.2382 -4.9261 18 8 1.9370 5.5264 -5.2285 19 6 2.3610 6.2811 -6.3656 20 6 3.1651 5.3798 -7.3047 21 6 1.1353 6.8228 -7.1039 22 6 3.2365 7.4484 -5.9053 23 6 2.8881 3.4033 -4.5730 24 6 4.0356 2.7615 -3.7896 25 6 3.9750 -0.4478 -0.0064 26 6 5.3860 -0.9771 -0.0136 27 16 2.5209 -1.4372 -0.0008 28 1 -0.3634 0.0970 -1.0231 29 1 -0.3633 -0.9345 0.4275 30 1 -0.3633 0.8375 0.5956 31 1 2.5090 3.2063 -0.1435 32 1 -0.0444 2.0808 -0.9352 33 1 1.8598 2.7692 2.7333 34 1 0.1942 4.1348 1.6021 35 1 5.9235 2.4523 -2.0027 36 1 5.0375 5.0409 -2.6801 37 1 4.0350 5.0462 -1.2092 38 1 3.0238 6.4565 -2.9804 39 1 1.9860 5.0597 -2.6050 40 1 2.5698 4.5053 -7.5671 41 1 3.4181 5.9320 -8.2098 42 1 4.0803 5.0602 -6.8064 43 1 0.5625 7.4648 -6.4348 44 1 1.4588 7.3988 -7.9710 45 1 0.5117 5.9912 -7.4318 46 1 4.1275 7.0615 -5.4109 47 1 3.5302 8.0448 -6.7691 48 1 2.6753 8.0705 -5.2081 49 1 2.9374 3.0866 -5.6148 50 1 1.9359 3.0918 -4.1436 51 1 3.9502 1.6763 -3.8439 52 1 4.9879 3.0730 -4.2187 53 1 5.7684 -1.0062 1.0068 54 1 5.3946 -1.9829 -0.4335 55 1 6.0156 -0.3251 -0.6190 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15739438_15065288.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:50:03 Heat of formation + Delta-G solvation = -127.694029 kcal Electronic energy + Delta-G solvation = -37900.403279 eV Core-core repulsion = 33350.388014 eV Total energy + Delta-G solvation = -4550.015264 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.157 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.89073 -40.39676 -39.01868 -38.55539 -37.30005 -37.18716 -35.34327 -34.05019 -33.53944 -31.87040 -30.97094 -29.25618 -28.26498 -28.14957 -28.00020 -25.90116 -23.72142 -23.34071 -23.23079 -21.37804 -20.85943 -20.74951 -20.12808 -19.09316 -18.50414 -18.17980 -17.66337 -17.49106 -17.08226 -16.67840 -16.12106 -15.91582 -15.80707 -15.73455 -15.35332 -15.23106 -14.80997 -14.63887 -14.55918 -14.44336 -14.38020 -14.29447 -14.18625 -14.05612 -13.69772 -13.54608 -13.47821 -13.38229 -13.31986 -13.17157 -13.14283 -13.01540 -12.81100 -12.76672 -12.66128 -12.65055 -12.63520 -12.42323 -12.33391 -12.17600 -12.12118 -11.82038 -11.73150 -11.63348 -11.38267 -11.10539 -10.76054 -10.63306 -10.29623 -9.96307 -9.38785 -5.18626 -0.90057 -0.44497 0.40790 0.70535 0.74173 1.25949 1.54411 1.86800 1.97457 2.48645 2.69191 3.06896 3.38538 3.45725 3.59893 3.67719 3.71596 3.88040 3.91529 3.96058 4.01047 4.05303 4.10489 4.12450 4.18878 4.21380 4.23598 4.27384 4.41854 4.48615 4.51847 4.57315 4.63014 4.63639 4.68541 4.70832 4.73675 4.75259 4.79519 4.89924 4.90934 4.92241 4.99740 5.01533 5.05706 5.07234 5.07910 5.13294 5.18272 5.19863 5.30281 5.32271 5.34333 5.35020 5.45220 5.94743 6.45361 6.60056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.179 4.179 3 C -0.089 4.089 4 C -0.084 4.084 5 O -0.536 6.536 6 Si 0.743 3.257 7 C -0.699 4.699 8 S 2.705 3.295 9 O -0.973 6.973 10 O -0.984 6.984 11 N -1.099 6.099 12 C 0.139 3.861 13 H 0.096 0.904 14 C -0.136 4.136 15 C -0.123 4.123 16 C 0.089 3.911 17 H 0.077 0.923 18 O -0.387 6.387 19 C 0.100 3.900 20 C -0.176 4.176 21 C -0.139 4.139 22 C -0.177 4.177 23 C -0.123 4.123 24 C -0.112 4.112 25 C -0.060 4.060 26 C -0.117 4.117 27 S 0.197 5.803 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.387 0.613 33 H -0.297 1.297 34 H -0.273 1.273 35 H 0.430 0.570 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.055 0.945 49 H 0.077 0.923 50 H 0.066 0.934 51 H 0.082 0.918 52 H 0.085 0.915 53 H 0.096 0.904 54 H 0.103 0.897 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.488 -5.247 -5.277 7.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.297 4.297 3 C -0.099 4.099 4 C -0.196 4.196 5 O -0.345 6.345 6 Si 0.648 3.352 7 C -0.801 4.801 8 S 2.796 3.204 9 O -0.964 6.964 10 O -0.974 6.974 11 N -0.861 5.861 12 C 0.032 3.968 13 H 0.114 0.886 14 C -0.176 4.176 15 C -0.161 4.161 16 C 0.032 3.968 17 H 0.095 0.905 18 O -0.307 6.307 19 C 0.061 3.939 20 C -0.233 4.233 21 C -0.196 4.196 22 C -0.235 4.235 23 C -0.162 4.162 24 C -0.151 4.151 25 C -0.181 4.181 26 C -0.175 4.175 27 S 0.464 5.536 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.147 0.853 32 H 0.239 0.761 33 H -0.224 1.224 34 H -0.199 1.199 35 H 0.267 0.733 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.100 0.900 52 H 0.104 0.896 53 H 0.114 0.886 54 H 0.121 0.879 55 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.352 -5.567 -3.942 7.215 hybrid contribution 1.116 1.433 -0.383 1.856 sum -1.236 -4.134 -4.325 6.109 Atomic orbital electron populations 1.20792 0.84832 1.05113 1.05057 1.24689 1.01900 0.94448 1.08678 1.18493 0.90550 0.96958 1.03879 1.25342 0.96698 0.94553 1.02976 1.86548 1.31919 1.71471 1.44535 0.95311 0.82797 0.83708 0.73401 1.29264 1.11836 1.13445 1.25552 1.01236 0.72815 0.73342 0.72999 1.93569 1.43730 1.78661 1.80396 1.93477 1.78281 1.52033 1.73631 1.55337 1.22371 1.76315 1.32031 1.21205 0.88935 0.92561 0.94058 0.88647 1.22045 0.99756 0.94798 1.00956 1.21729 0.98927 1.00582 0.94876 1.22121 0.90944 0.92742 0.91031 0.90546 1.88000 1.33306 1.68132 1.41249 1.21684 0.95304 0.90922 0.86016 1.22479 1.00322 1.00343 1.00179 1.21788 0.96606 1.01234 1.00004 1.22466 0.99935 0.98615 1.02440 1.21814 0.99158 0.94173 1.01057 1.21739 0.99809 1.01483 0.92108 1.24789 1.02076 0.94995 0.96252 1.21009 0.87627 1.03394 1.05492 1.84235 0.93675 1.07352 1.68387 0.87309 0.88226 0.88639 0.85344 0.76129 1.22435 1.19894 0.73277 0.89829 0.91848 0.91503 0.91773 0.91948 0.90598 0.91809 0.92577 0.89814 0.92153 0.92075 0.90488 0.92569 0.90453 0.91499 0.89960 0.89650 0.88556 0.87853 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.95 8.44 71.23 0.60 1.55 16 2 C -0.18 0.32 6.10 24.59 0.15 0.47 16 3 C -0.09 -0.29 4.05 -20.92 -0.08 -0.37 16 4 C -0.08 -0.41 1.21 71.24 0.09 -0.32 16 5 O -0.54 -0.63 12.27 -148.98 -1.83 -2.46 16 6 Si 0.74 3.74 29.73 68.60 2.04 5.78 16 7 C -0.70 -3.35 5.74 21.22 0.12 -3.23 16 8 S 2.71 19.18 5.28 -56.49 -0.30 18.88 16 9 O -0.97 -9.72 14.91 -128.00 -1.91 -11.63 16 10 O -0.98 -12.83 13.96 -128.00 -1.79 -14.62 16 11 N -1.10 -0.56 5.47 -169.38 -0.93 -1.49 16 12 C 0.14 0.15 2.38 44.99 0.11 0.25 16 13 H 0.10 0.31 4.20 -2.38 -0.01 0.30 16 14 C -0.14 -0.34 5.53 30.60 0.17 -0.17 16 15 C -0.12 -0.42 5.57 30.59 0.17 -0.25 16 16 C 0.09 0.12 1.52 30.59 0.05 0.16 16 17 H 0.08 -0.07 4.92 -2.39 -0.01 -0.08 16 18 O -0.39 -1.80 9.63 -148.98 -1.43 -3.24 16 19 C 0.10 0.09 1.11 -10.79 -0.01 0.07 16 20 C -0.18 0.33 8.04 71.98 0.58 0.91 16 21 C -0.14 -0.02 8.84 71.98 0.64 0.61 16 22 C -0.18 0.06 8.37 71.98 0.60 0.66 16 23 C -0.12 0.06 5.58 30.61 0.17 0.23 16 24 C -0.11 0.31 5.45 30.61 0.17 0.48 16 25 C -0.06 -0.10 6.50 24.59 0.16 0.06 16 26 C -0.12 0.08 8.87 71.24 0.63 0.72 16 27 S 0.20 -0.44 23.31 -56.49 -1.32 -1.76 16 28 H 0.11 -1.38 7.58 -2.39 -0.02 -1.40 16 29 H 0.10 -1.20 8.14 -2.39 -0.02 -1.22 16 30 H 0.10 -1.12 4.41 -2.39 -0.01 -1.13 16 31 H 0.13 1.13 3.31 -2.39 -0.01 1.12 16 32 H 0.39 -2.70 5.58 -74.06 -0.41 -3.11 16 33 H -0.30 -4.03 7.11 99.48 0.71 -3.33 16 34 H -0.27 -2.66 7.11 99.48 0.71 -1.95 16 35 H 0.43 -1.94 8.84 -96.75 -0.85 -2.79 16 36 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.06 0.40 7.64 -2.38 -0.02 0.38 16 38 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 39 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 42 H 0.06 -0.18 6.64 -2.39 -0.02 -0.19 16 43 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.08 -0.24 8.14 -2.38 -0.02 -0.26 16 45 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.06 -0.06 6.63 -2.39 -0.02 -0.07 16 47 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 49 H 0.08 -0.13 7.95 -2.39 -0.02 -0.15 16 50 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 51 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 52 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 53 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 54 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 55 H 0.09 -0.05 6.50 -2.39 -0.02 -0.06 16 Total: 0.00 -20.35 426.55 -3.46 -23.82 By element: Atomic # 1 Polarization: -14.81 SS G_CDS: -0.31 Total: -15.12 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 4.30 Total: 1.84 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -0.93 Total: -1.49 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -6.96 Total: -31.95 kcal Atomic # 14 Polarization: 3.74 SS G_CDS: 2.04 Total: 5.78 kcal Atomic # 16 Polarization: 18.73 SS G_CDS: -1.61 Total: 17.12 kcal Total: -20.35 -3.46 -23.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15739438_15065288.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.878 kcal (2) G-P(sol) polarization free energy of solvation -20.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds