Wall clock time and date at job start Mon Mar 8 2021 12:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86296 * 109.47175 * 2 1 4 4 C 1.50693 * 109.47052 * 239.99730 * 2 1 3 5 5 C 1.38233 * 120.00207 * 299.99585 * 4 2 1 6 6 C 1.38234 * 120.00037 * 179.72405 * 5 4 2 7 7 C 1.38234 * 120.00240 * 0.26327 * 6 5 4 8 8 S 1.76203 * 120.00235 * 179.97438 * 7 6 5 9 9 O 1.42098 * 106.39893 * 203.54139 * 8 7 6 10 10 O 1.42101 * 106.40216 * 336.45887 * 8 7 6 11 11 N 1.65603 * 107.21747 * 90.00062 * 8 7 6 12 12 C 1.46504 * 119.99915 * 64.99824 * 11 8 7 13 13 H 1.08997 * 112.84681 * 13.80693 * 12 11 8 14 14 C 1.53781 * 113.61142 * 145.00055 * 12 11 8 15 15 C 1.53778 * 87.07810 * 139.98071 * 14 12 11 16 16 H 1.08995 * 113.61569 * 89.12015 * 15 14 12 17 17 C 1.53005 * 113.61164 * 219.93434 * 15 14 12 18 18 F 1.39901 * 109.47028 * 185.00179 * 17 15 14 19 19 C 1.53772 * 87.08523 * 334.56603 * 15 14 12 20 20 C 1.38238 * 119.99693 * 0.02562 * 7 6 5 21 21 C 1.38234 * 120.00063 * 359.97438 * 20 7 6 22 22 H 0.96700 * 113.99823 * 300.00301 * 1 2 3 23 23 H 1.09001 * 109.47057 * 119.99805 * 2 1 3 24 24 H 1.48507 * 109.99995 * 299.99851 * 3 2 1 25 25 H 1.48495 * 110.00383 * 61.31454 * 3 2 1 26 26 H 1.08002 * 120.00157 * 0.02562 * 5 4 2 27 27 H 1.07999 * 120.00009 * 180.28389 * 6 5 4 28 28 H 0.97001 * 119.99498 * 245.00002 * 11 8 7 29 29 H 1.08997 * 113.61563 * 254.53322 * 14 12 11 30 30 H 1.09006 * 113.61482 * 25.34594 * 14 12 11 31 31 H 1.08997 * 109.47341 * 304.99844 * 17 15 14 32 32 H 1.08996 * 109.47136 * 65.00535 * 17 15 14 33 33 H 1.09006 * 113.62026 * 270.88890 * 19 15 14 34 34 H 1.09002 * 113.61675 * 139.97787 * 19 15 14 35 35 H 1.08002 * 119.99673 * 179.97438 * 20 7 6 36 36 H 1.08000 * 120.00005 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5975 -2.0339 -1.4491 6 6 2.0535 -2.6839 -2.5806 7 6 2.8480 -2.0121 -3.4908 8 16 3.4299 -2.8408 -4.9327 9 8 4.5981 -2.1477 -5.3498 10 8 3.4161 -4.2293 -4.6307 11 7 2.2996 -2.6094 -6.1208 12 6 2.0447 -1.2622 -6.6370 13 1 2.8108 -0.5446 -6.3434 14 6 1.7136 -1.2303 -8.1383 15 6 0.6581 -0.1636 -7.8026 16 1 1.0439 0.8555 -7.8275 17 6 -0.6464 -0.3243 -8.5859 18 9 -1.4969 0.7493 -8.3007 19 6 0.6091 -0.7694 -6.3901 20 6 3.1868 -0.6903 -3.2691 21 6 2.7307 -0.0403 -2.1375 22 1 -0.3933 0.4417 0.7650 23 1 1.7923 -0.5138 0.8900 24 1 1.5615 2.4679 -1.2086 25 1 1.5879 2.4586 1.2241 26 1 0.9763 -2.5587 -0.7383 27 1 1.7889 -3.7166 -2.7537 28 1 1.8064 -3.3659 -6.4748 29 1 2.5294 -0.8576 -8.7576 30 1 1.2904 -2.1628 -8.5121 31 1 -0.4291 -0.3418 -9.6539 32 1 -1.1304 -1.2575 -8.2981 33 1 -0.1173 -1.5753 -6.2854 34 1 0.5334 -0.0245 -5.5978 35 1 3.8078 -0.1655 -3.9800 36 1 2.9957 0.9922 -1.9641 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15744756_13421422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:00:11 Heat of formation + Delta-G solvation = -101.279366 kcal Electronic energy + Delta-G solvation = -22791.461433 eV Core-core repulsion = 19091.430898 eV Total energy + Delta-G solvation = -3700.030536 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.53606 -40.69199 -40.41529 -38.22708 -37.91326 -36.86198 -34.53164 -33.21167 -32.24527 -29.23980 -27.32247 -26.88938 -24.17090 -23.64804 -22.87365 -21.26897 -20.49067 -19.24386 -18.74983 -18.41706 -17.74025 -17.16127 -17.08178 -16.88891 -16.79681 -16.06567 -15.90165 -15.84747 -15.45635 -15.23921 -14.68995 -14.39293 -14.22159 -14.01220 -13.91728 -13.66312 -13.59522 -13.13524 -13.11088 -12.98547 -12.89710 -12.48428 -12.42687 -12.13400 -11.94554 -11.83703 -11.64063 -11.34689 -10.81737 -10.60112 -10.34415 -10.16792 -5.11083 -0.71594 -0.36711 0.16171 1.07951 1.45115 1.80152 1.85515 2.27604 2.72748 3.05685 3.14434 3.24998 3.26776 3.41925 3.51807 3.56429 3.68017 3.73801 3.84198 4.00213 4.03690 4.08837 4.15548 4.22722 4.32609 4.45374 4.52411 4.54114 4.60442 4.76372 4.77757 4.82857 4.90228 4.91490 4.94719 5.22068 5.28644 5.64825 5.80001 6.22653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.087 4.087 3 Si 0.684 3.316 4 C -0.015 4.015 5 C -0.112 4.112 6 C -0.016 4.016 7 C -0.674 4.674 8 S 2.693 3.307 9 O -0.952 6.952 10 O -0.955 6.955 11 N -1.103 6.103 12 C 0.126 3.874 13 H 0.121 0.879 14 C -0.133 4.133 15 C -0.146 4.146 16 H 0.108 0.892 17 C 0.072 3.928 18 F -0.217 7.217 19 C -0.149 4.149 20 C -0.015 4.015 21 C -0.136 4.136 22 H 0.384 0.616 23 H 0.084 0.916 24 H -0.252 1.252 25 H -0.257 1.257 26 H 0.136 0.864 27 H 0.143 0.857 28 H 0.421 0.579 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.145 0.855 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 1.440 0.867 1.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.196 4.196 3 Si 0.584 3.416 4 C -0.016 4.016 5 C -0.131 4.131 6 C -0.035 4.035 7 C -0.761 4.761 8 S 2.783 3.217 9 O -0.942 6.942 10 O -0.946 6.946 11 N -0.862 5.862 12 C 0.018 3.982 13 H 0.138 0.862 14 C -0.173 4.173 15 C -0.166 4.166 16 H 0.126 0.874 17 C 0.017 3.983 18 F -0.198 7.198 19 C -0.189 4.189 20 C -0.035 4.035 21 C -0.154 4.154 22 H 0.232 0.768 23 H 0.102 0.898 24 H -0.176 1.176 25 H -0.182 1.182 26 H 0.153 0.847 27 H 0.161 0.839 28 H 0.256 0.744 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.163 0.837 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.195 1.666 0.331 1.710 hybrid contribution -1.942 -0.009 0.971 2.172 sum -1.748 1.658 1.302 2.738 Atomic orbital electron populations 1.86570 1.17221 1.80342 1.50026 1.24937 0.84993 1.11494 0.98173 0.94961 0.91651 0.74175 0.80822 1.19619 0.94054 0.94071 0.93836 1.21155 0.99796 0.94153 0.98029 1.20966 0.91151 0.99449 0.91968 1.30963 1.15469 1.07327 1.22316 1.01968 0.73351 0.73402 0.73021 1.93614 1.44202 1.75454 1.80931 1.93619 1.86253 1.30296 1.84382 1.55532 1.60884 1.15082 1.54658 1.22341 0.97444 0.82891 0.95518 0.86171 1.23316 0.98706 0.99332 0.95896 1.23058 0.95873 1.00825 0.96822 0.87404 1.21988 0.88282 0.87408 1.00576 1.92788 1.72839 1.58882 1.95340 1.23625 0.97219 1.01036 0.96979 1.20865 0.94207 0.91895 0.96490 1.21082 0.99590 1.00080 0.94658 0.76778 0.89800 1.17592 1.18203 0.84654 0.83906 0.74397 0.89692 0.88749 0.90430 0.90605 0.88875 0.90335 0.83705 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.01 12.74 -35.23 -0.45 -0.46 16 2 C -0.09 0.10 2.81 36.00 0.10 0.20 16 3 Si 0.68 -1.24 29.79 -169.99 -5.06 -6.31 16 4 C -0.02 0.00 5.42 -104.63 -0.57 -0.57 16 5 C -0.11 -0.06 9.61 -39.58 -0.38 -0.44 16 6 C -0.02 -0.01 9.52 -39.58 -0.38 -0.38 16 7 C -0.67 -0.31 5.95 -39.58 -0.24 -0.55 16 8 S 2.69 2.29 5.71 -107.50 -0.61 1.68 16 9 O -0.95 -3.29 16.80 -57.17 -0.96 -4.26 16 10 O -0.96 -3.58 17.28 -57.17 -0.99 -4.57 16 11 N -1.10 2.30 5.79 -4.20 -0.02 2.28 16 12 C 0.13 -0.32 4.43 -67.12 -0.30 -0.62 16 13 H 0.12 -0.36 7.77 -51.93 -0.40 -0.77 16 14 C -0.13 0.45 7.43 -25.92 -0.19 0.26 16 15 C -0.15 0.39 4.09 -89.81 -0.37 0.02 16 16 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 17 C 0.07 -0.14 7.39 37.16 0.27 0.13 16 18 F -0.22 -0.42 17.36 2.25 0.04 -0.38 16 19 C -0.15 0.37 7.43 -25.92 -0.19 0.17 16 20 C -0.02 0.00 9.52 -39.58 -0.38 -0.37 16 21 C -0.14 0.05 8.67 -39.58 -0.34 -0.29 16 22 H 0.38 -1.48 8.74 45.56 0.40 -1.08 16 23 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 24 H -0.25 -0.29 7.11 56.52 0.40 0.12 16 25 H -0.26 -0.06 7.11 56.52 0.40 0.34 16 26 H 0.14 -0.08 8.06 -52.49 -0.42 -0.50 16 27 H 0.14 -0.11 7.62 -52.49 -0.40 -0.51 16 28 H 0.42 -1.63 8.94 -34.47 -0.31 -1.94 16 29 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 30 H 0.09 -0.41 8.10 -51.93 -0.42 -0.83 16 31 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 32 H 0.08 -0.24 7.85 -51.93 -0.41 -0.65 16 33 H 0.09 -0.26 7.90 -51.93 -0.41 -0.67 16 34 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 35 H 0.15 -0.29 7.62 -52.49 -0.40 -0.69 16 36 H 0.14 -0.34 4.88 -52.49 -0.26 -0.60 16 LS Contribution 319.97 15.07 4.82 4.82 Total: 0.00 -10.20 319.97 -10.52 -20.73 By element: Atomic # 1 Polarization: -6.76 SS G_CDS: -4.33 Total: -11.10 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.95 Total: -2.44 kcal Atomic # 7 Polarization: 2.30 SS G_CDS: -0.02 Total: 2.28 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -2.40 Total: -9.28 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 0.04 Total: -0.38 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: -5.06 Total: -6.31 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -0.61 Total: 1.68 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -10.20 -10.52 -20.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15744756_13421422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.552 kcal (2) G-P(sol) polarization free energy of solvation -10.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds