Wall clock time and date at job start Mon Mar 8 2021 12:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86296 * 109.47175 * 2 1 4 4 C 1.50693 * 109.47052 * 239.99730 * 2 1 3 5 5 C 1.38233 * 120.00207 * 299.99585 * 4 2 1 6 6 C 1.38234 * 120.00037 * 179.72405 * 5 4 2 7 7 C 1.38234 * 120.00240 * 0.26327 * 6 5 4 8 8 S 1.76203 * 120.00235 * 179.97438 * 7 6 5 9 9 O 1.42098 * 106.39893 * 203.54139 * 8 7 6 10 10 O 1.42101 * 106.40216 * 336.45887 * 8 7 6 11 11 N 1.65603 * 107.21747 * 90.00062 * 8 7 6 12 12 C 1.46504 * 119.99915 * 64.99824 * 11 8 7 13 13 H 1.08997 * 112.84681 * 13.80693 * 12 11 8 14 14 C 1.53781 * 113.61142 * 145.00055 * 12 11 8 15 15 C 1.53778 * 87.07810 * 139.98071 * 14 12 11 16 16 H 1.08995 * 113.61569 * 89.12015 * 15 14 12 17 17 C 1.53005 * 113.61164 * 219.93434 * 15 14 12 18 18 F 1.39901 * 109.47028 * 185.00179 * 17 15 14 19 19 C 1.53772 * 87.08523 * 334.56603 * 15 14 12 20 20 C 1.38238 * 119.99693 * 0.02562 * 7 6 5 21 21 C 1.38234 * 120.00063 * 359.97438 * 20 7 6 22 22 H 0.96700 * 113.99823 * 300.00301 * 1 2 3 23 23 H 1.09001 * 109.47057 * 119.99805 * 2 1 3 24 24 H 1.48507 * 109.99995 * 299.99851 * 3 2 1 25 25 H 1.48495 * 110.00383 * 61.31454 * 3 2 1 26 26 H 1.08002 * 120.00157 * 0.02562 * 5 4 2 27 27 H 1.07999 * 120.00009 * 180.28389 * 6 5 4 28 28 H 0.97001 * 119.99498 * 245.00002 * 11 8 7 29 29 H 1.08997 * 113.61563 * 254.53322 * 14 12 11 30 30 H 1.09006 * 113.61482 * 25.34594 * 14 12 11 31 31 H 1.08997 * 109.47341 * 304.99844 * 17 15 14 32 32 H 1.08996 * 109.47136 * 65.00535 * 17 15 14 33 33 H 1.09006 * 113.62026 * 270.88890 * 19 15 14 34 34 H 1.09002 * 113.61675 * 139.97787 * 19 15 14 35 35 H 1.08002 * 119.99673 * 179.97438 * 20 7 6 36 36 H 1.08000 * 120.00005 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5975 -2.0339 -1.4491 6 6 2.0535 -2.6839 -2.5806 7 6 2.8480 -2.0121 -3.4908 8 16 3.4299 -2.8408 -4.9327 9 8 4.5981 -2.1477 -5.3498 10 8 3.4161 -4.2293 -4.6307 11 7 2.2996 -2.6094 -6.1208 12 6 2.0447 -1.2622 -6.6370 13 1 2.8108 -0.5446 -6.3434 14 6 1.7136 -1.2303 -8.1383 15 6 0.6581 -0.1636 -7.8026 16 1 1.0439 0.8555 -7.8275 17 6 -0.6464 -0.3243 -8.5859 18 9 -1.4969 0.7493 -8.3007 19 6 0.6091 -0.7694 -6.3901 20 6 3.1868 -0.6903 -3.2691 21 6 2.7307 -0.0403 -2.1375 22 1 -0.3933 0.4417 0.7650 23 1 1.7923 -0.5138 0.8900 24 1 1.5615 2.4679 -1.2086 25 1 1.5879 2.4586 1.2241 26 1 0.9763 -2.5587 -0.7383 27 1 1.7889 -3.7166 -2.7537 28 1 1.8064 -3.3659 -6.4748 29 1 2.5294 -0.8576 -8.7576 30 1 1.2904 -2.1628 -8.5121 31 1 -0.4291 -0.3418 -9.6539 32 1 -1.1304 -1.2575 -8.2981 33 1 -0.1173 -1.5753 -6.2854 34 1 0.5334 -0.0245 -5.5978 35 1 3.8078 -0.1655 -3.9800 36 1 2.9957 0.9922 -1.9641 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15744756_13421422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:00:11 Heat of formation + Delta-G solvation = -103.945081 kcal Electronic energy + Delta-G solvation = -22791.577027 eV Core-core repulsion = 19091.430898 eV Total energy + Delta-G solvation = -3700.146130 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.54028 -40.64408 -40.22706 -38.39819 -37.84780 -37.04210 -34.41450 -33.18252 -32.21252 -29.07593 -27.26370 -26.65883 -24.13346 -23.49688 -22.83986 -21.11514 -20.45363 -19.23160 -18.67091 -18.46236 -17.66155 -17.11460 -16.97758 -16.81873 -16.72207 -16.09968 -15.83030 -15.78141 -15.42785 -15.19287 -14.64608 -14.36344 -14.13205 -13.98776 -13.86958 -13.64421 -13.40609 -13.31410 -13.25337 -12.91952 -12.89565 -12.45041 -12.30649 -12.01155 -11.94064 -11.80012 -11.46922 -11.17568 -10.74970 -10.46306 -10.29001 -10.14651 -4.98064 -0.74791 -0.38203 0.18391 1.19785 1.54612 1.87227 1.89458 2.29216 2.69420 3.18751 3.19519 3.39504 3.47044 3.61660 3.63774 3.72839 3.76202 3.81787 4.02892 4.17055 4.19709 4.25224 4.26707 4.36926 4.43791 4.59153 4.63506 4.78736 4.82490 4.83666 4.91632 4.95327 4.97450 5.08150 5.10728 5.24927 5.50319 5.68538 6.02263 6.48595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.094 4.094 3 Si 0.760 3.240 4 C -0.027 4.027 5 C -0.124 4.124 6 C -0.026 4.026 7 C -0.678 4.678 8 S 2.711 3.289 9 O -0.980 6.980 10 O -0.987 6.987 11 N -1.092 6.092 12 C 0.118 3.882 13 H 0.124 0.876 14 C -0.126 4.126 15 C -0.144 4.144 16 H 0.105 0.895 17 C 0.064 3.936 18 F -0.241 7.241 19 C -0.150 4.150 20 C -0.022 4.022 21 C -0.142 4.142 22 H 0.398 0.602 23 H 0.104 0.896 24 H -0.293 1.293 25 H -0.283 1.283 26 H 0.143 0.857 27 H 0.150 0.850 28 H 0.430 0.570 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.161 0.839 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 1.497 0.801 1.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.203 4.203 3 Si 0.664 3.336 4 C -0.027 4.027 5 C -0.143 4.143 6 C -0.046 4.046 7 C -0.766 4.766 8 S 2.802 3.198 9 O -0.970 6.970 10 O -0.978 6.978 11 N -0.853 5.853 12 C 0.011 3.989 13 H 0.142 0.858 14 C -0.166 4.166 15 C -0.164 4.164 16 H 0.123 0.877 17 C 0.009 3.991 18 F -0.223 7.223 19 C -0.190 4.190 20 C -0.041 4.041 21 C -0.160 4.160 22 H 0.249 0.751 23 H 0.122 0.878 24 H -0.220 1.220 25 H -0.210 1.210 26 H 0.160 0.840 27 H 0.168 0.832 28 H 0.268 0.732 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.178 0.822 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.207 1.694 0.268 1.727 hybrid contribution -2.014 0.017 0.994 2.246 sum -1.807 1.711 1.263 2.790 Atomic orbital electron populations 1.86526 1.17879 1.80833 1.51285 1.25122 0.84621 1.12150 0.98390 0.94109 0.90428 0.71987 0.77028 1.19893 0.94124 0.94219 0.94503 1.21327 1.00127 0.94535 0.98275 1.21133 0.91337 0.99950 0.92140 1.30868 1.15871 1.07680 1.22164 1.01178 0.73198 0.72326 0.73112 1.93573 1.46141 1.75767 1.81524 1.93569 1.86883 1.32290 1.85018 1.55263 1.60368 1.15836 1.53834 1.22512 0.97556 0.82474 0.96344 0.85825 1.23328 0.98495 0.99618 0.95114 1.23007 0.95814 1.00973 0.96568 0.87669 1.22254 0.88186 0.87017 1.01633 1.92737 1.73730 1.60227 1.95559 1.23644 0.97355 1.01010 0.96943 1.21138 0.94224 0.91803 0.96957 1.21339 0.99340 1.00922 0.94422 0.75059 0.87823 1.22002 1.21034 0.83959 0.83217 0.73238 0.89237 0.87428 0.89039 0.89301 0.88394 0.91163 0.82197 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.09 12.74 -148.98 -1.90 -1.81 16 2 C -0.09 0.25 2.81 71.23 0.20 0.45 16 3 Si 0.76 -2.92 29.79 68.60 2.04 -0.88 16 4 C -0.03 -0.01 5.42 -19.87 -0.11 -0.12 16 5 C -0.12 -0.17 9.61 22.27 0.21 0.05 16 6 C -0.03 -0.04 9.52 22.27 0.21 0.17 16 7 C -0.68 -0.97 5.95 22.27 0.13 -0.84 16 8 S 2.71 6.27 5.71 -56.49 -0.32 5.95 16 9 O -0.98 -7.37 16.80 -128.00 -2.15 -9.52 16 10 O -0.99 -8.29 17.28 -128.00 -2.21 -10.50 16 11 N -1.09 4.58 5.79 -167.19 -0.97 3.61 16 12 C 0.12 -0.63 4.43 45.52 0.20 -0.43 16 13 H 0.12 -0.75 7.77 -2.39 -0.02 -0.77 16 14 C -0.13 0.97 7.43 31.12 0.23 1.20 16 15 C -0.14 0.81 4.09 -10.27 -0.04 0.77 16 16 H 0.11 -0.53 8.14 -2.39 -0.02 -0.55 16 17 C 0.06 -0.27 7.39 71.98 0.53 0.26 16 18 F -0.24 -1.03 17.36 44.97 0.78 -0.25 16 19 C -0.15 0.75 7.43 31.12 0.23 0.98 16 20 C -0.02 0.00 9.52 22.27 0.21 0.22 16 21 C -0.14 0.11 8.67 22.27 0.19 0.31 16 22 H 0.40 -3.17 8.74 -74.06 -0.65 -3.82 16 23 H 0.10 -0.70 7.96 -2.39 -0.02 -0.72 16 24 H -0.29 -0.88 7.11 99.48 0.71 -0.17 16 25 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 26 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 27 H 0.15 -0.11 7.62 -2.91 -0.02 -0.14 16 28 H 0.43 -3.45 8.94 -96.75 -0.87 -4.31 16 29 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H 0.11 -1.10 8.10 -2.38 -0.02 -1.12 16 31 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.09 -0.63 7.85 -2.39 -0.02 -0.65 16 33 H 0.10 -0.59 7.90 -2.38 -0.02 -0.61 16 34 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.16 -0.65 7.62 -2.91 -0.02 -0.67 16 36 H 0.16 -0.82 4.88 -2.91 -0.01 -0.84 16 Total: 0.00 -23.09 319.97 -2.87 -25.96 By element: Atomic # 1 Polarization: -15.23 SS G_CDS: -0.35 Total: -15.58 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 2.21 Total: 3.02 kcal Atomic # 7 Polarization: 4.58 SS G_CDS: -0.97 Total: 3.61 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -6.26 Total: -21.83 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.78 Total: -0.25 kcal Atomic # 14 Polarization: -2.92 SS G_CDS: 2.04 Total: -0.88 kcal Atomic # 16 Polarization: 6.27 SS G_CDS: -0.32 Total: 5.95 kcal Total: -23.09 -2.87 -25.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15744756_13421422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.981 kcal (2) G-P(sol) polarization free energy of solvation -23.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds