Wall clock time and date at job start Mon Mar 8 2021 12:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47221 * 2 1 4 4 C 1.50706 * 109.47093 * 239.99751 * 2 1 3 5 5 C 1.33384 * 122.53990 * 284.99949 * 4 2 1 6 6 S 1.76194 * 125.20706 * 0.02562 * 5 4 2 7 7 O 1.42101 * 106.40656 * 66.17135 * 6 5 4 8 8 O 1.42101 * 106.39927 * 293.25735 * 6 5 4 9 9 N 1.65603 * 107.22084 * 179.71828 * 6 5 4 10 10 C 1.46496 * 119.99949 * 65.00002 * 9 6 5 11 11 H 1.08993 * 112.85481 * 13.79949 * 10 9 6 12 12 C 1.53775 * 113.61497 * 145.00425 * 10 9 6 13 13 C 1.53777 * 87.08327 * 140.05875 * 12 10 9 14 14 H 1.09006 * 113.61317 * 89.19983 * 13 12 10 15 15 C 1.53006 * 113.61597 * 220.01533 * 13 12 10 16 16 F 1.39903 * 109.46814 * 300.00409 * 15 13 12 17 17 C 1.53777 * 87.08072 * 334.56492 * 13 12 10 18 18 S 1.75883 * 109.59152 * 179.75083 * 5 4 2 19 19 C 1.75881 * 90.97291 * 0.22904 * 18 5 4 20 20 C 1.33390 * 109.59410 * 359.97438 * 19 18 5 21 21 H 0.96697 * 114.00017 * 59.99846 * 1 2 3 22 22 H 1.09001 * 109.47066 * 120.00128 * 2 1 3 23 23 H 1.48501 * 109.99656 * 298.67994 * 3 2 1 24 24 H 1.48495 * 109.99776 * 60.00285 * 3 2 1 25 25 H 0.97001 * 119.99358 * 244.99210 * 9 6 5 26 26 H 1.09001 * 113.61819 * 25.50758 * 12 10 9 27 27 H 1.08998 * 113.61444 * 254.60899 * 12 10 9 28 28 H 1.09001 * 109.47002 * 59.99865 * 15 13 12 29 29 H 1.08993 * 109.46955 * 180.02562 * 15 13 12 30 30 H 1.09007 * 113.61156 * 139.98195 * 17 13 12 31 31 H 1.09001 * 113.61446 * 270.88201 * 17 13 12 32 32 H 1.07999 * 125.20915 * 180.02562 * 19 18 5 33 33 H 1.07997 * 122.54608 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.8961 -2.0378 -1.3572 6 16 1.2752 -3.1577 -0.1468 7 8 -0.1207 -2.9102 -0.0497 8 8 2.1577 -3.0776 0.9640 9 7 1.4375 -4.6859 -0.7638 10 6 2.7716 -5.2354 -1.0177 11 1 3.5651 -4.6552 -0.5468 12 6 2.8752 -6.7471 -0.7557 13 6 3.7534 -6.8257 -2.0156 14 1 4.8155 -6.6817 -1.8172 15 6 3.4722 -8.0543 -2.8830 16 9 3.7066 -9.2149 -2.1377 17 6 3.0370 -5.5536 -2.4986 18 16 2.5571 -2.4988 -2.9205 19 6 2.8592 -0.8136 -3.3233 20 6 2.4669 -0.0351 -2.3137 21 1 -0.3933 0.4417 -0.7650 22 1 1.7923 -0.5139 0.8900 23 1 1.5879 2.4585 -1.2243 24 1 1.5616 2.4678 1.2085 25 1 0.6492 -5.2171 -0.9569 26 1 1.9254 -7.2731 -0.8519 27 1 3.4065 -6.9956 0.1631 28 1 2.4330 -8.0372 -3.2114 29 1 4.1288 -8.0428 -3.7529 30 1 3.6990 -4.8385 -2.9871 31 1 2.1314 -5.7533 -3.0715 32 1 3.2949 -0.4626 -4.2471 33 1 2.5577 1.0407 -2.3403 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15744756_13652106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:00:14 Heat of formation + Delta-G solvation = -87.774219 kcal Electronic energy + Delta-G solvation = -21847.051948 eV Core-core repulsion = 18236.759285 eV Total energy + Delta-G solvation = -3610.292662 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.038 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.55444 -40.49012 -40.09719 -38.09165 -37.20816 -36.78992 -34.60044 -31.52965 -29.31818 -28.07066 -26.96531 -24.42431 -23.72234 -21.77452 -21.06020 -19.93712 -19.75104 -18.60860 -17.96109 -17.80454 -17.18805 -16.84121 -16.76763 -16.25717 -16.16710 -16.01424 -15.86797 -15.35816 -15.28229 -14.35582 -14.13253 -14.06420 -13.70959 -13.67496 -13.55470 -13.16526 -13.05904 -12.93666 -12.69737 -12.66851 -12.41940 -12.27274 -11.94464 -11.79888 -11.61578 -11.37585 -10.75686 -10.67899 -10.47985 -9.74253 -5.05499 -0.72072 -0.69158 0.16115 0.53001 1.11679 1.16218 1.48376 1.86872 1.89796 2.62891 3.13295 3.20526 3.22973 3.35175 3.39226 3.48304 3.63003 3.81661 3.87206 3.92072 3.98148 4.02228 4.19972 4.28231 4.48859 4.52576 4.53877 4.59254 4.71946 4.77059 4.78330 4.90034 4.96597 5.23224 5.75276 6.31474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.508 6.508 2 C -0.106 4.106 3 Si 0.710 3.290 4 C 0.007 3.993 5 C -0.766 4.766 6 S 2.713 3.287 7 O -0.930 6.930 8 O -0.945 6.945 9 N -1.106 6.106 10 C 0.118 3.882 11 H 0.123 0.877 12 C -0.132 4.132 13 C -0.144 4.144 14 H 0.108 0.892 15 C 0.073 3.927 16 F -0.215 7.215 17 C -0.152 4.152 18 S 0.210 5.790 19 C -0.167 4.167 20 C -0.163 4.163 21 H 0.378 0.622 22 H 0.127 0.873 23 H -0.253 1.253 24 H -0.248 1.248 25 H 0.423 0.577 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.178 0.822 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 0.640 -6.088 7.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.314 6.314 2 C -0.217 4.217 3 Si 0.609 3.391 4 C -0.010 4.010 5 C -0.966 4.966 6 S 2.797 3.203 7 O -0.920 6.920 8 O -0.935 6.935 9 N -0.866 5.866 10 C 0.011 3.989 11 H 0.141 0.859 12 C -0.171 4.171 13 C -0.163 4.163 14 H 0.126 0.874 15 C 0.017 3.983 16 F -0.196 7.196 17 C -0.192 4.192 18 S 0.477 5.523 19 C -0.304 4.304 20 C -0.193 4.193 21 H 0.226 0.774 22 H 0.145 0.855 23 H -0.178 1.178 24 H -0.172 1.172 25 H 0.259 0.741 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.195 0.805 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.065 0.119 -5.468 6.814 hybrid contribution -1.215 1.074 -0.766 1.793 sum 2.850 1.193 -6.234 6.958 Atomic orbital electron populations 1.86789 1.15624 1.79974 1.49026 1.25350 0.85563 1.13491 0.97299 0.94613 0.91064 0.72517 0.80871 1.18969 0.94097 0.91337 0.96627 1.35731 1.26029 1.14386 1.20451 1.01673 0.73859 0.71787 0.72956 1.93669 1.29576 1.83702 1.85080 1.93628 1.67699 1.85866 1.46280 1.55600 1.13962 1.33061 1.83952 1.22468 0.83706 0.96343 0.96431 0.85899 1.23311 1.00844 0.94322 0.98635 1.23025 1.01209 0.94829 0.97287 0.87373 1.21942 1.02527 0.80536 0.93247 1.92792 1.96302 1.51286 1.79253 1.23639 1.01634 0.97060 0.96897 1.84162 1.56322 1.05435 1.06396 1.26202 1.03620 0.97242 1.03386 1.20328 1.03532 1.02075 0.93378 0.77370 0.85508 1.17807 1.17223 0.74113 0.88768 0.89720 0.90646 0.90490 0.89713 0.88422 0.80477 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.51 12.27 -36.45 -0.45 -1.96 16 2 C -0.11 -0.15 2.33 36.01 0.08 -0.07 16 3 Si 0.71 -0.67 30.45 -169.99 -5.18 -5.85 16 4 C 0.01 0.01 5.13 -106.24 -0.55 -0.54 16 5 C -0.77 -0.74 6.46 29.04 0.19 -0.56 16 6 S 2.71 6.63 5.04 -107.50 -0.54 6.09 16 7 O -0.93 -5.26 17.41 -59.76 -1.04 -6.30 16 8 O -0.94 -4.70 17.04 -57.17 -0.97 -5.67 16 9 N -1.11 1.35 5.60 -4.20 -0.02 1.32 16 10 C 0.12 -0.27 3.82 -67.12 -0.26 -0.53 16 11 H 0.12 -0.29 7.77 -51.93 -0.40 -0.69 16 12 C -0.13 0.32 7.29 -25.92 -0.19 0.13 16 13 C -0.14 0.48 4.13 -89.81 -0.37 0.11 16 14 H 0.11 -0.40 8.14 -51.93 -0.42 -0.83 16 15 C 0.07 -0.20 7.40 37.16 0.28 0.08 16 16 F -0.22 -0.24 17.22 2.25 0.04 -0.20 16 17 C -0.15 0.62 6.06 -25.92 -0.16 0.47 16 18 S 0.21 -0.42 19.80 -107.50 -2.13 -2.55 16 19 C -0.17 0.40 11.23 29.04 0.33 0.72 16 20 C -0.16 0.21 8.74 -41.21 -0.36 -0.15 16 21 H 0.38 -0.25 8.70 45.56 0.40 0.15 16 22 H 0.13 0.24 7.26 -51.93 -0.38 -0.14 16 23 H -0.25 0.07 6.81 56.52 0.38 0.45 16 24 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 25 H 0.42 -1.29 8.94 -34.47 -0.31 -1.60 16 26 H 0.09 -0.26 8.10 -51.93 -0.42 -0.68 16 27 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 28 H 0.08 -0.30 7.94 -51.93 -0.41 -0.71 16 29 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 30 H 0.08 -0.41 6.86 -51.92 -0.36 -0.77 16 31 H 0.10 -0.48 7.96 -51.93 -0.41 -0.90 16 32 H 0.18 -0.90 8.06 -52.49 -0.42 -1.32 16 33 H 0.16 -0.47 5.53 -52.49 -0.29 -0.76 16 LS Contribution 302.92 15.07 4.56 4.56 Total: 0.00 -9.90 302.92 -10.23 -20.13 By element: Atomic # 1 Polarization: -5.75 SS G_CDS: -3.49 Total: -9.24 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.01 Total: -0.34 kcal Atomic # 7 Polarization: 1.35 SS G_CDS: -0.02 Total: 1.32 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -2.46 Total: -13.92 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 0.04 Total: -0.20 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: -5.18 Total: -5.85 kcal Atomic # 16 Polarization: 6.21 SS G_CDS: -2.67 Total: 3.54 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -9.90 -10.23 -20.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15744756_13652106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.648 kcal (2) G-P(sol) polarization free energy of solvation -9.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds