Wall clock time and date at job start Mon Mar 8 2021 12:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33388 * 125.20119 * 2 1 4 4 C 1.50694 * 122.54398 * 359.97250 * 3 2 1 5 5 O 1.42905 * 109.47435 * 62.03352 * 4 3 2 6 6 Si 1.86302 * 109.46954 * 302.03708 * 4 3 2 7 7 C 1.38429 * 114.91833 * 180.20654 * 3 2 1 8 8 S 1.76198 * 122.54009 * 179.75963 * 7 3 2 9 9 O 1.42104 * 106.40234 * 162.72830 * 8 7 3 10 10 O 1.42103 * 106.40090 * 29.80854 * 8 7 3 11 11 N 1.65597 * 107.21749 * 276.27048 * 8 7 3 12 12 C 1.46500 * 120.00216 * 65.00186 * 11 8 7 13 13 H 1.09004 * 112.84665 * 346.19150 * 12 11 8 14 14 C 1.53772 * 113.61455 * 117.50194 * 12 11 8 15 15 C 1.53781 * 87.08340 * 139.98200 * 14 12 11 16 16 H 1.08996 * 113.61916 * 89.11068 * 15 14 12 17 17 C 1.53001 * 113.61626 * 220.01933 * 15 14 12 18 18 F 1.39900 * 109.47059 * 162.48944 * 17 15 14 19 19 C 1.53784 * 113.61146 * 215.00054 * 12 11 8 20 20 C 1.33392 * 114.91717 * 359.49143 * 7 3 2 21 21 C 1.50708 * 125.19955 * 180.24834 * 20 7 3 22 22 S 1.75883 * 109.59655 * 0.26906 * 20 7 3 23 23 H 1.08995 * 109.47056 * 181.51992 * 1 2 3 24 24 H 1.09001 * 109.46976 * 301.51640 * 1 2 3 25 25 H 1.08990 * 109.46926 * 61.51507 * 1 2 3 26 26 H 1.09006 * 109.47537 * 182.03709 * 4 3 2 27 27 H 0.96690 * 113.99907 * 180.02562 * 5 4 3 28 28 H 1.48505 * 109.99873 * 315.40983 * 6 4 3 29 29 H 1.48492 * 110.00154 * 76.72936 * 6 4 3 30 30 H 0.97001 * 119.99785 * 244.99760 * 11 8 7 31 31 H 1.09004 * 113.61827 * 254.52928 * 14 12 11 32 32 H 1.09001 * 113.61809 * 25.43409 * 14 12 11 33 33 H 1.08996 * 109.47011 * 282.49582 * 17 15 14 34 34 H 1.09004 * 109.46811 * 42.49360 * 17 15 14 35 35 H 1.09001 * 113.61636 * 334.56304 * 19 12 11 36 36 H 1.09000 * 113.61111 * 105.46868 * 19 12 11 37 37 H 1.08996 * 109.47005 * 90.00162 * 21 20 7 38 38 H 1.09000 * 109.46845 * 210.00171 * 21 20 7 39 39 H 1.09006 * 109.46829 * 330.00007 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7053 2.4846 -0.0006 5 8 0.9396 2.6866 1.1890 6 14 0.6083 2.7061 -1.4901 7 6 3.6380 0.8429 -0.0045 8 16 4.8357 2.1352 -0.0116 9 8 6.0647 1.5455 0.3898 10 8 4.2434 3.2349 0.6660 11 7 5.0363 2.6089 -1.5856 12 6 3.9259 3.2315 -2.3105 13 1 2.9690 3.1124 -1.8022 14 6 4.2134 4.6748 -2.7563 15 6 3.4973 4.3277 -4.0722 16 1 2.4230 4.5096 -4.0459 17 6 4.1715 4.9197 -5.3115 18 9 3.7180 4.2507 -6.4535 19 6 3.8808 2.8629 -3.8028 20 6 3.9751 -0.4478 0.0025 21 6 5.3861 -0.9771 0.0050 22 16 2.5209 -1.4372 0.0079 23 1 -0.3633 -1.0273 0.0273 24 1 -0.3633 0.5372 0.8761 25 1 -0.3633 0.4901 -0.9032 26 1 2.5182 3.2100 -0.0370 27 1 0.5411 3.5650 1.2558 28 1 1.2704 2.1470 -2.6961 29 1 -0.6945 2.0296 -1.2664 30 1 5.8892 2.4742 -2.0277 31 1 3.6944 5.4270 -2.1621 32 1 5.2746 4.8903 -2.8804 33 1 3.9247 5.9785 -5.3885 34 1 5.2521 4.8037 -5.2276 35 1 4.8511 2.5831 -4.2130 36 1 3.0932 2.1522 -4.0534 37 1 5.7266 -1.0990 1.0332 38 1 5.4135 -1.9408 -0.5035 39 1 6.0387 -0.2743 -0.5130 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15744756_15065288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:00:22 Heat of formation + Delta-G solvation = -81.466211 kcal Electronic energy + Delta-G solvation = -26707.577920 eV Core-core repulsion = 22786.483555 eV Total energy + Delta-G solvation = -3921.094365 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.070 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -48.54562 -40.63135 -40.11934 -38.50421 -37.14902 -36.93094 -34.59903 -34.35890 -30.99011 -29.33969 -28.15893 -26.91428 -26.01347 -23.76534 -23.14178 -21.43067 -20.57961 -19.96101 -19.19534 -18.52695 -18.17303 -17.79198 -17.25241 -17.06797 -16.76372 -16.38507 -16.11585 -16.07651 -15.67013 -15.26513 -15.13458 -14.71976 -14.52450 -14.20806 -14.12201 -13.95179 -13.87044 -13.69832 -13.58381 -13.38229 -13.24168 -13.13619 -12.94211 -12.87060 -12.52081 -12.46335 -12.07135 -11.99286 -11.76087 -11.61961 -11.51632 -11.35099 -10.66721 -10.36995 -10.02291 -9.46444 -5.14633 -0.79814 -0.45098 0.33927 0.62909 0.78795 1.17877 1.43999 1.81312 1.94115 2.60645 3.12860 3.16574 3.21828 3.26822 3.37759 3.51175 3.60310 3.61534 3.80544 3.91763 3.99159 4.00649 4.06783 4.17970 4.23412 4.40424 4.46341 4.46896 4.50387 4.53519 4.60351 4.62830 4.72353 4.81775 4.85981 4.88646 4.94734 5.02956 5.17663 5.22375 5.74115 6.62289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.172 4.172 3 C -0.038 4.038 4 C -0.083 4.083 5 O -0.533 6.533 6 Si 0.643 3.357 7 C -0.683 4.683 8 S 2.701 3.299 9 O -0.950 6.950 10 O -0.939 6.939 11 N -1.102 6.102 12 C 0.118 3.882 13 H 0.106 0.894 14 C -0.139 4.139 15 C -0.149 4.149 16 H 0.109 0.891 17 C 0.073 3.927 18 F -0.216 7.216 19 C -0.140 4.140 20 C -0.049 4.049 21 C -0.115 4.115 22 S 0.161 5.839 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.384 0.616 28 H -0.240 1.240 29 H -0.228 1.228 30 H 0.422 0.578 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 2.100 -3.306 4.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.290 4.290 3 C -0.048 4.048 4 C -0.195 4.195 5 O -0.339 6.339 6 Si 0.543 3.457 7 C -0.782 4.782 8 S 2.789 3.211 9 O -0.940 6.940 10 O -0.928 6.928 11 N -0.861 5.861 12 C 0.011 3.989 13 H 0.124 0.876 14 C -0.179 4.179 15 C -0.168 4.168 16 H 0.127 0.873 17 C 0.018 3.982 18 F -0.198 7.198 19 C -0.179 4.179 20 C -0.170 4.170 21 C -0.173 4.173 22 S 0.427 5.573 23 H 0.091 0.909 24 H 0.113 0.887 25 H 0.100 0.900 26 H 0.123 0.877 27 H 0.232 0.768 28 H -0.165 1.165 29 H -0.153 1.153 30 H 0.258 0.742 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.262 -0.184 -3.014 3.272 hybrid contribution 0.243 0.303 -0.026 0.390 sum -1.019 0.119 -3.040 3.208 Atomic orbital electron populations 1.20796 0.87205 1.03476 1.04266 1.24453 1.00427 0.95174 1.08922 1.17492 0.89953 0.94660 1.02736 1.25134 1.01661 0.94589 0.98134 1.86446 1.69395 1.38357 1.39739 0.96611 0.81354 0.91210 0.76486 1.29425 1.11605 1.13579 1.23585 1.01795 0.73146 0.73591 0.72577 1.93598 1.42125 1.78118 1.80163 1.93542 1.77789 1.50474 1.71015 1.55572 1.21327 1.75722 1.33443 1.22507 0.89163 0.94249 0.92957 0.87647 1.23468 1.02306 0.96709 0.95370 1.23083 1.01852 0.97032 0.94854 0.87315 1.21946 0.99021 0.96368 0.80871 1.92785 1.91165 1.82988 1.52821 1.23446 1.03443 0.96771 0.94257 1.24592 1.00836 0.94880 0.96665 1.21004 0.88135 1.02664 1.05516 1.84395 0.95197 1.08384 1.69322 0.90851 0.88661 0.89963 0.87716 0.76843 1.16464 1.15348 0.74216 0.89214 0.88371 0.90225 0.90578 0.88547 0.90231 0.88175 0.89999 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.14 8.76 36.01 0.32 0.18 16 2 C -0.17 -0.48 6.08 -36.00 -0.22 -0.70 16 3 C -0.04 -0.12 4.41 -106.25 -0.47 -0.59 16 4 C -0.08 -0.13 1.90 36.00 0.07 -0.06 16 5 O -0.53 -0.86 11.90 -35.23 -0.42 -1.28 16 6 Si 0.64 -0.59 27.37 -169.99 -4.65 -5.24 16 7 C -0.68 -1.91 5.86 -41.20 -0.24 -2.15 16 8 S 2.70 5.81 5.33 -107.50 -0.57 5.23 16 9 O -0.95 -3.51 14.68 -57.17 -0.84 -4.35 16 10 O -0.94 -4.03 14.62 -57.17 -0.84 -4.87 16 11 N -1.10 1.42 5.79 -4.20 -0.02 1.39 16 12 C 0.12 -0.19 4.28 -67.12 -0.29 -0.48 16 13 H 0.11 -0.13 1.80 -51.93 -0.09 -0.22 16 14 C -0.14 0.46 7.43 -25.92 -0.19 0.27 16 15 C -0.15 0.44 4.11 -89.80 -0.37 0.07 16 16 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 17 C 0.07 -0.19 7.33 37.16 0.27 0.08 16 18 F -0.22 -0.24 17.30 2.25 0.04 -0.20 16 19 C -0.14 0.28 7.38 -25.91 -0.19 0.09 16 20 C -0.05 -0.10 6.50 -36.00 -0.23 -0.33 16 21 C -0.11 -0.02 9.14 36.01 0.33 0.31 16 22 S 0.16 0.25 23.31 -107.50 -2.51 -2.25 16 23 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 24 H 0.09 0.15 7.47 -51.93 -0.39 -0.24 16 25 H 0.08 0.09 4.40 -51.93 -0.23 -0.14 16 26 H 0.11 0.13 3.29 -51.93 -0.17 -0.04 16 27 H 0.38 -1.23 8.74 45.56 0.40 -0.83 16 28 H -0.24 -0.06 6.58 56.52 0.37 0.31 16 29 H -0.23 -0.12 5.48 56.52 0.31 0.19 16 30 H 0.42 -1.55 8.94 -34.47 -0.31 -1.86 16 31 H 0.09 -0.37 8.14 -51.93 -0.42 -0.79 16 32 H 0.10 -0.42 8.03 -51.93 -0.42 -0.84 16 33 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 34 H 0.08 -0.30 8.05 -51.93 -0.42 -0.72 16 35 H 0.10 -0.28 8.10 -51.93 -0.42 -0.70 16 36 H 0.08 -0.08 7.66 -51.93 -0.40 -0.48 16 37 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 39 H 0.10 -0.01 5.97 -51.93 -0.31 -0.32 16 LS Contribution 326.87 15.07 4.93 4.93 Total: 0.00 -8.89 326.87 -10.71 -19.60 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: -4.61 Total: -9.66 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.22 Total: -3.30 kcal Atomic # 7 Polarization: 1.42 SS G_CDS: -0.02 Total: 1.39 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -2.09 Total: -10.50 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 0.04 Total: -0.20 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: -4.65 Total: -5.24 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -3.08 Total: 2.98 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -8.89 -10.71 -19.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15744756_15065288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.865 kcal (2) G-P(sol) polarization free energy of solvation -8.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds