Wall clock time and date at job start Mon Mar 8 2021 12:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33388 * 125.20119 * 2 1 4 4 C 1.50694 * 122.54398 * 359.97250 * 3 2 1 5 5 O 1.42905 * 109.47435 * 62.03352 * 4 3 2 6 6 Si 1.86302 * 109.46954 * 302.03708 * 4 3 2 7 7 C 1.38429 * 114.91833 * 180.20654 * 3 2 1 8 8 S 1.76198 * 122.54009 * 179.75963 * 7 3 2 9 9 O 1.42104 * 106.40234 * 162.72830 * 8 7 3 10 10 O 1.42103 * 106.40090 * 29.80854 * 8 7 3 11 11 N 1.65597 * 107.21749 * 276.27048 * 8 7 3 12 12 C 1.46500 * 120.00216 * 65.00186 * 11 8 7 13 13 H 1.09004 * 112.84665 * 346.19150 * 12 11 8 14 14 C 1.53772 * 113.61455 * 117.50194 * 12 11 8 15 15 C 1.53781 * 87.08340 * 139.98200 * 14 12 11 16 16 H 1.08996 * 113.61916 * 89.11068 * 15 14 12 17 17 C 1.53001 * 113.61626 * 220.01933 * 15 14 12 18 18 F 1.39900 * 109.47059 * 162.48944 * 17 15 14 19 19 C 1.53784 * 113.61146 * 215.00054 * 12 11 8 20 20 C 1.33392 * 114.91717 * 359.49143 * 7 3 2 21 21 C 1.50708 * 125.19955 * 180.24834 * 20 7 3 22 22 S 1.75883 * 109.59655 * 0.26906 * 20 7 3 23 23 H 1.08995 * 109.47056 * 181.51992 * 1 2 3 24 24 H 1.09001 * 109.46976 * 301.51640 * 1 2 3 25 25 H 1.08990 * 109.46926 * 61.51507 * 1 2 3 26 26 H 1.09006 * 109.47537 * 182.03709 * 4 3 2 27 27 H 0.96690 * 113.99907 * 180.02562 * 5 4 3 28 28 H 1.48505 * 109.99873 * 315.40983 * 6 4 3 29 29 H 1.48492 * 110.00154 * 76.72936 * 6 4 3 30 30 H 0.97001 * 119.99785 * 244.99760 * 11 8 7 31 31 H 1.09004 * 113.61827 * 254.52928 * 14 12 11 32 32 H 1.09001 * 113.61809 * 25.43409 * 14 12 11 33 33 H 1.08996 * 109.47011 * 282.49582 * 17 15 14 34 34 H 1.09004 * 109.46811 * 42.49360 * 17 15 14 35 35 H 1.09001 * 113.61636 * 334.56304 * 19 12 11 36 36 H 1.09000 * 113.61111 * 105.46868 * 19 12 11 37 37 H 1.08996 * 109.47005 * 90.00162 * 21 20 7 38 38 H 1.09000 * 109.46845 * 210.00171 * 21 20 7 39 39 H 1.09006 * 109.46829 * 330.00007 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7053 2.4846 -0.0006 5 8 0.9396 2.6866 1.1890 6 14 0.6083 2.7061 -1.4901 7 6 3.6380 0.8429 -0.0045 8 16 4.8357 2.1352 -0.0116 9 8 6.0647 1.5455 0.3898 10 8 4.2434 3.2349 0.6660 11 7 5.0363 2.6089 -1.5856 12 6 3.9259 3.2315 -2.3105 13 1 2.9690 3.1124 -1.8022 14 6 4.2134 4.6748 -2.7563 15 6 3.4973 4.3277 -4.0722 16 1 2.4230 4.5096 -4.0459 17 6 4.1715 4.9197 -5.3115 18 9 3.7180 4.2507 -6.4535 19 6 3.8808 2.8629 -3.8028 20 6 3.9751 -0.4478 0.0025 21 6 5.3861 -0.9771 0.0050 22 16 2.5209 -1.4372 0.0079 23 1 -0.3633 -1.0273 0.0273 24 1 -0.3633 0.5372 0.8761 25 1 -0.3633 0.4901 -0.9032 26 1 2.5182 3.2100 -0.0370 27 1 0.5411 3.5650 1.2558 28 1 1.2704 2.1470 -2.6961 29 1 -0.6945 2.0296 -1.2664 30 1 5.8892 2.4742 -2.0277 31 1 3.6944 5.4270 -2.1621 32 1 5.2746 4.8903 -2.8804 33 1 3.9247 5.9785 -5.3885 34 1 5.2521 4.8037 -5.2276 35 1 4.8511 2.5831 -4.2130 36 1 3.0932 2.1522 -4.0534 37 1 5.7266 -1.0990 1.0332 38 1 5.4135 -1.9408 -0.5035 39 1 6.0387 -0.2743 -0.5130 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15744756_15065288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:00:21 Heat of formation + Delta-G solvation = -83.080207 kcal Electronic energy + Delta-G solvation = -26707.647908 eV Core-core repulsion = 22786.483555 eV Total energy + Delta-G solvation = -3921.164353 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.070 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.46822 -40.55029 -40.11305 -38.69667 -37.23330 -37.14868 -34.51094 -34.44629 -31.06025 -29.15217 -28.20304 -26.68015 -26.11829 -23.61931 -23.21692 -21.32834 -20.58790 -20.06127 -19.25448 -18.62433 -18.22511 -17.74309 -17.28157 -16.94702 -16.63569 -16.45223 -16.19802 -15.96004 -15.76669 -15.23005 -15.18370 -14.78001 -14.60109 -14.26130 -14.03505 -13.96287 -13.91028 -13.67868 -13.57357 -13.41011 -13.37162 -13.18689 -12.96564 -12.92966 -12.63733 -12.31064 -12.09401 -11.88758 -11.69415 -11.61644 -11.45243 -11.17394 -10.55950 -10.42338 -10.13921 -9.57014 -5.08870 -0.91260 -0.58796 0.23186 0.50783 0.67368 1.17394 1.48599 1.83755 1.88582 2.48536 3.05129 3.23789 3.36220 3.40030 3.52352 3.59524 3.69362 3.72088 3.82509 3.93537 4.00093 4.17194 4.21728 4.26319 4.31958 4.39325 4.44690 4.47516 4.57178 4.72966 4.76522 4.77768 4.82370 4.85859 4.92476 5.01180 5.06530 5.08361 5.13547 5.45959 5.93919 6.79628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.194 4.194 3 C -0.055 4.055 4 C -0.104 4.104 5 O -0.553 6.553 6 Si 0.722 3.278 7 C -0.699 4.699 8 S 2.712 3.288 9 O -0.970 6.970 10 O -0.964 6.964 11 N -1.088 6.088 12 C 0.106 3.894 13 H 0.100 0.900 14 C -0.133 4.133 15 C -0.146 4.146 16 H 0.115 0.885 17 C 0.065 3.935 18 F -0.239 7.239 19 C -0.143 4.143 20 C -0.054 4.054 21 C -0.120 4.120 22 S 0.174 5.826 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.401 0.599 28 H -0.258 1.258 29 H -0.249 1.249 30 H 0.433 0.567 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 2.641 -4.020 4.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.311 4.311 3 C -0.065 4.065 4 C -0.214 4.214 5 O -0.362 6.362 6 Si 0.622 3.378 7 C -0.798 4.798 8 S 2.800 3.200 9 O -0.960 6.960 10 O -0.953 6.953 11 N -0.851 5.851 12 C -0.001 4.001 13 H 0.117 0.883 14 C -0.173 4.173 15 C -0.165 4.165 16 H 0.133 0.867 17 C 0.010 3.990 18 F -0.221 7.221 19 C -0.182 4.182 20 C -0.175 4.175 21 C -0.178 4.178 22 S 0.440 5.560 23 H 0.103 0.897 24 H 0.109 0.891 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.252 0.748 28 H -0.183 1.183 29 H -0.175 1.175 30 H 0.272 0.728 31 H 0.119 0.881 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.096 0.374 -3.708 3.885 hybrid contribution 0.214 0.117 0.207 0.320 sum -0.882 0.491 -3.501 3.644 Atomic orbital electron populations 1.20823 0.86569 1.04212 1.04122 1.24719 1.01196 0.95675 1.09558 1.17823 0.90286 0.95691 1.02697 1.25492 1.02605 0.93847 0.99406 1.86393 1.69609 1.40044 1.40170 0.95796 0.78553 0.89768 0.73635 1.29546 1.11768 1.14072 1.24411 1.01285 0.72441 0.73084 0.73194 1.93564 1.42919 1.78402 1.81123 1.93509 1.78153 1.51346 1.72306 1.55292 1.22122 1.75336 1.32320 1.22700 0.88797 0.95673 0.92917 0.88270 1.23509 1.03271 0.95604 0.94895 1.23081 1.02353 0.96142 0.94932 0.86713 1.22202 0.99897 0.97005 0.79849 1.92738 1.91506 1.83584 1.54247 1.23502 1.03555 0.97276 0.93901 1.24895 1.01726 0.94889 0.95986 1.21136 0.87106 1.03756 1.05844 1.84237 0.94806 1.07870 1.69105 0.89710 0.89109 0.89808 0.87745 0.74798 1.18307 1.17518 0.72803 0.88137 0.87087 0.88620 0.89162 0.87658 0.91542 0.88142 0.87921 0.87577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 8.76 71.24 0.62 0.28 16 2 C -0.19 -1.25 6.08 24.59 0.15 -1.10 16 3 C -0.05 -0.40 4.41 -20.92 -0.09 -0.49 16 4 C -0.10 -0.39 1.90 71.23 0.14 -0.25 16 5 O -0.55 -2.25 11.90 -148.98 -1.77 -4.02 16 6 Si 0.72 -1.20 27.37 68.60 1.88 0.68 16 7 C -0.70 -4.58 5.86 21.22 0.12 -4.46 16 8 S 2.71 13.83 5.33 -56.49 -0.30 13.53 16 9 O -0.97 -7.96 14.68 -128.00 -1.88 -9.83 16 10 O -0.96 -9.23 14.62 -128.00 -1.87 -11.10 16 11 N -1.09 2.70 5.79 -167.20 -0.97 1.74 16 12 C 0.11 -0.36 4.28 45.52 0.19 -0.16 16 13 H 0.10 -0.22 1.80 -2.39 0.00 -0.22 16 14 C -0.13 1.03 7.43 31.12 0.23 1.26 16 15 C -0.15 0.98 4.11 -10.26 -0.04 0.94 16 16 H 0.11 -0.93 8.14 -2.39 -0.02 -0.95 16 17 C 0.07 -0.41 7.33 71.98 0.53 0.12 16 18 F -0.24 -0.48 17.30 44.97 0.78 0.29 16 19 C -0.14 0.61 7.38 31.12 0.23 0.84 16 20 C -0.05 -0.25 6.50 24.59 0.16 -0.09 16 21 C -0.12 -0.06 9.14 71.24 0.65 0.59 16 22 S 0.17 0.65 23.31 -56.49 -1.32 -0.67 16 23 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 24 H 0.09 0.37 7.47 -2.39 -0.02 0.36 16 25 H 0.08 0.24 4.40 -2.39 -0.01 0.23 16 26 H 0.11 0.34 3.29 -2.38 -0.01 0.33 16 27 H 0.40 -2.36 8.74 -74.06 -0.65 -3.00 16 28 H -0.26 -0.23 6.58 99.48 0.65 0.43 16 29 H -0.25 -0.33 5.48 99.48 0.55 0.21 16 30 H 0.43 -3.28 8.94 -96.75 -0.87 -4.14 16 31 H 0.10 -0.96 8.14 -2.38 -0.02 -0.98 16 32 H 0.11 -1.14 8.03 -2.39 -0.02 -1.16 16 33 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 34 H 0.09 -0.84 8.05 -2.39 -0.02 -0.86 16 35 H 0.11 -0.67 8.10 -2.39 -0.02 -0.69 16 36 H 0.07 -0.09 7.66 -2.39 -0.02 -0.11 16 37 H 0.10 0.05 8.14 -2.39 -0.02 0.04 16 38 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.11 0.02 5.97 -2.38 -0.01 0.01 16 Total: 0.00 -20.66 326.87 -3.12 -23.79 By element: Atomic # 1 Polarization: -11.31 SS G_CDS: -0.56 Total: -11.87 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 2.89 Total: -2.53 kcal Atomic # 7 Polarization: 2.70 SS G_CDS: -0.97 Total: 1.74 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -5.52 Total: -24.96 kcal Atomic # 9 Polarization: -0.48 SS G_CDS: 0.78 Total: 0.29 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: 1.88 Total: 0.68 kcal Atomic # 16 Polarization: 14.48 SS G_CDS: -1.62 Total: 12.86 kcal Total: -20.66 -3.12 -23.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15744756_15065288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.295 kcal (2) G-P(sol) polarization free energy of solvation -20.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds