Wall clock time and date at job start Mon Mar 8 2021 12:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47353 * 2 1 4 4 C 1.50703 * 109.47019 * 119.99684 * 2 1 3 5 5 C 1.38209 * 120.00115 * 75.58533 * 4 2 1 6 6 S 1.76204 * 119.99953 * 359.97438 * 5 4 2 7 7 O 1.42098 * 106.40104 * 177.53589 * 6 5 4 8 8 O 1.42100 * 106.40204 * 310.46004 * 6 5 4 9 9 N 1.65602 * 107.21584 * 64.00001 * 6 5 4 10 10 C 1.46497 * 120.00433 * 63.45013 * 9 6 5 11 11 H 1.09003 * 112.84606 * 12.80404 * 10 9 6 12 12 C 1.53778 * 113.61491 * 143.99525 * 10 9 6 13 13 C 1.53779 * 87.08291 * 139.98414 * 12 10 9 14 14 H 1.09003 * 113.61507 * 89.11235 * 13 12 10 15 15 C 1.52994 * 113.61896 * 219.93601 * 13 12 10 16 16 F 1.39898 * 109.46927 * 300.00132 * 15 13 12 17 17 C 1.53782 * 113.61840 * 241.60469 * 10 9 6 18 18 C 1.38262 * 120.00209 * 179.97438 * 5 4 2 19 19 C 1.38206 * 119.99882 * 0.02562 * 18 5 4 20 20 C 1.38257 * 119.99914 * 359.97438 * 19 18 5 21 21 C 1.38209 * 120.00141 * 359.97438 * 20 19 18 22 22 H 0.96694 * 114.00167 * 64.96280 * 1 2 3 23 23 H 1.08995 * 109.47283 * 239.99568 * 2 1 3 24 24 H 1.48495 * 109.99878 * 59.99643 * 3 2 1 25 25 H 1.48494 * 110.00172 * 181.32054 * 3 2 1 26 26 H 0.97001 * 119.99663 * 243.45520 * 9 6 5 27 27 H 1.09002 * 113.61657 * 254.53256 * 12 10 9 28 28 H 1.09000 * 113.61629 * 25.43412 * 12 10 9 29 29 H 1.09000 * 109.47376 * 59.99919 * 15 13 12 30 30 H 1.08994 * 109.47471 * 179.97438 * 15 13 12 31 31 H 1.08996 * 113.61383 * 334.56581 * 17 10 9 32 32 H 1.08997 * 113.61276 * 105.46793 * 17 10 9 33 33 H 1.07999 * 120.00023 * 180.02562 * 18 5 4 34 34 H 1.08008 * 120.00306 * 179.97438 * 19 18 5 35 35 H 1.08003 * 119.99529 * 179.69943 * 20 19 18 36 36 H 1.08000 * 120.00042 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8808 -2.0897 1.3013 6 16 1.2283 -3.0177 -0.0471 7 8 1.3669 -4.3875 0.3043 8 8 -0.0189 -2.4223 -0.3777 9 7 2.2259 -2.7646 -1.3445 10 6 3.6220 -3.2055 -1.2921 11 1 3.8237 -3.8734 -0.4546 12 6 4.1544 -3.7263 -2.6375 13 6 5.4694 -3.0000 -2.3088 14 1 6.1775 -3.6110 -1.7490 15 6 6.1059 -2.3084 -3.5160 16 9 6.3894 -3.2593 -4.5022 17 6 4.6361 -2.0568 -1.4222 18 6 2.3421 -2.7415 2.4300 19 6 2.8533 -2.0136 3.4878 20 6 2.9039 -0.6338 3.4170 21 6 2.4437 0.0177 2.2883 22 1 -0.3933 0.3738 -0.8003 23 1 1.7924 -0.5139 -0.8899 24 1 1.5615 2.4679 1.2084 25 1 3.5346 1.7703 -0.0322 26 1 1.8858 -2.3244 -2.1391 27 1 4.2530 -4.8111 -2.6776 28 1 3.6329 -3.3155 -3.5020 29 1 5.4152 -1.5657 -3.9152 30 1 7.0290 -1.8172 -3.2083 31 1 4.2466 -1.1886 -1.9538 32 1 5.1229 -1.7957 -0.4826 33 1 2.3029 -3.8194 2.4850 34 1 3.2134 -2.5226 4.3697 35 1 3.2990 -0.0647 4.2456 36 1 2.4836 1.0955 2.2329 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15744756_2726874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:00:26 Heat of formation + Delta-G solvation = -91.102256 kcal Electronic energy + Delta-G solvation = -23776.331126 eV Core-core repulsion = 20076.741903 eV Total energy + Delta-G solvation = -3699.589223 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.082 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -48.56126 -40.76025 -40.38280 -38.32891 -37.37463 -36.73429 -34.57880 -33.01865 -32.51097 -29.31219 -27.01400 -26.90816 -24.51834 -23.69037 -22.75666 -21.30109 -20.42933 -19.14495 -18.56961 -18.23166 -17.81369 -17.27534 -17.10413 -16.82913 -16.78190 -16.04922 -15.95051 -15.80095 -15.36029 -15.20608 -14.86755 -14.24793 -14.05995 -13.94703 -13.70134 -13.58500 -13.57342 -13.21716 -13.14064 -12.96219 -12.82811 -12.45529 -12.19666 -12.17838 -11.96377 -11.81899 -11.68037 -11.37140 -10.68224 -10.54739 -10.30243 -10.16368 -5.13980 -0.66239 -0.32660 0.00857 1.06396 1.47009 1.77036 1.88353 2.28076 2.73261 3.13389 3.14589 3.22160 3.33451 3.41167 3.53109 3.59984 3.69896 3.81512 3.85289 3.88656 3.91652 3.99300 4.10718 4.18875 4.26852 4.45001 4.49221 4.54933 4.55297 4.63999 4.72636 4.80162 4.88864 4.90810 5.00627 5.14192 5.24480 5.59431 5.79049 6.64704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.514 6.514 2 C -0.106 4.106 3 Si 0.694 3.306 4 C 0.031 3.969 5 C -0.655 4.655 6 S 2.686 3.314 7 O -0.959 6.959 8 O -0.925 6.925 9 N -1.106 6.106 10 C 0.126 3.874 11 H 0.119 0.881 12 C -0.133 4.133 13 C -0.147 4.147 14 H 0.106 0.894 15 C 0.073 3.927 16 F -0.215 7.215 17 C -0.147 4.147 18 C -0.022 4.022 19 C -0.133 4.133 20 C -0.058 4.058 21 C -0.145 4.145 22 H 0.385 0.615 23 H 0.072 0.928 24 H -0.247 1.247 25 H -0.251 1.251 26 H 0.420 0.580 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 4.475 -1.278 5.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.320 6.320 2 C -0.217 4.217 3 Si 0.594 3.406 4 C 0.029 3.971 5 C -0.740 4.740 6 S 2.775 3.225 7 O -0.948 6.948 8 O -0.915 6.915 9 N -0.865 5.865 10 C 0.019 3.981 11 H 0.137 0.863 12 C -0.172 4.172 13 C -0.166 4.166 14 H 0.124 0.876 15 C 0.018 3.982 16 F -0.196 7.196 17 C -0.187 4.187 18 C -0.041 4.041 19 C -0.152 4.152 20 C -0.076 4.076 21 C -0.163 4.163 22 H 0.233 0.767 23 H 0.090 0.910 24 H -0.172 1.172 25 H -0.176 1.176 26 H 0.255 0.745 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.591 4.169 -0.095 5.504 hybrid contribution 0.504 0.086 0.323 0.604 sum 4.095 4.255 0.228 5.910 Atomic orbital electron populations 1.86668 1.14234 1.86395 1.44724 1.25053 0.88471 1.11646 0.96503 0.94892 0.80450 0.77619 0.87639 1.18904 0.92706 0.91519 0.93925 1.30835 1.18216 1.06060 1.18925 1.02315 0.73304 0.73777 0.73144 1.93597 1.86200 1.31416 1.83629 1.93699 1.37697 1.77665 1.82432 1.55666 1.22776 1.75946 1.32074 1.22327 0.78892 0.96547 1.00364 0.86329 1.23321 0.94916 1.01893 0.97070 1.23064 0.97046 0.99230 0.97264 0.87601 1.21923 1.01379 0.89177 0.85729 1.92790 1.95273 1.67437 1.64128 1.23567 0.96748 0.97744 1.00640 1.21095 0.91105 1.00845 0.91061 1.21396 1.00357 0.94178 0.99273 1.21459 0.94284 0.94949 0.96877 1.21148 1.01250 0.99725 0.94149 0.76744 0.90998 1.17153 1.17580 0.74482 0.89853 0.88793 0.90624 0.90591 0.88789 0.90294 0.83478 0.84408 0.84661 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -0.52 10.43 -57.83 -0.60 -1.12 16 2 C -0.11 0.05 1.84 36.01 0.07 0.11 16 3 Si 0.69 -1.42 30.30 -169.99 -5.15 -6.57 16 4 C 0.03 0.05 5.28 -104.62 -0.55 -0.50 16 5 C -0.65 -1.23 5.85 -39.58 -0.23 -1.46 16 6 S 2.69 5.43 4.94 -107.50 -0.53 4.90 16 7 O -0.96 -4.59 16.57 -57.17 -0.95 -5.54 16 8 O -0.93 -4.08 14.99 -66.44 -1.00 -5.08 16 9 N -1.11 1.95 4.49 -4.20 -0.02 1.93 16 10 C 0.13 -0.29 4.40 -67.12 -0.30 -0.58 16 11 H 0.12 -0.26 7.82 -51.93 -0.41 -0.67 16 12 C -0.13 0.32 7.30 -25.92 -0.19 0.13 16 13 C -0.15 0.44 4.13 -89.72 -0.37 0.07 16 14 H 0.11 -0.33 8.14 -51.93 -0.42 -0.75 16 15 C 0.07 -0.18 7.41 37.15 0.28 0.09 16 16 F -0.22 -0.26 17.22 2.25 0.04 -0.22 16 17 C -0.15 0.53 7.45 -25.83 -0.19 0.34 16 18 C -0.02 -0.03 9.55 -39.58 -0.38 -0.40 16 19 C -0.13 0.01 10.05 -39.59 -0.40 -0.39 16 20 C -0.06 0.00 10.05 -39.58 -0.40 -0.40 16 21 C -0.14 -0.18 8.66 -39.59 -0.34 -0.52 16 22 H 0.38 -1.41 8.86 45.56 0.40 -1.01 16 23 H 0.07 -0.21 5.85 -51.93 -0.30 -0.52 16 24 H -0.25 -0.22 6.73 56.52 0.38 0.16 16 25 H -0.25 0.11 7.11 56.52 0.40 0.51 16 26 H 0.42 -1.71 8.67 -34.47 -0.30 -2.01 16 27 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 28 H 0.09 -0.28 8.10 -51.93 -0.42 -0.70 16 29 H 0.08 -0.30 7.96 -51.93 -0.41 -0.72 16 30 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 31 H 0.09 -0.45 7.98 -51.93 -0.41 -0.86 16 32 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 33 H 0.15 0.02 7.34 -52.49 -0.39 -0.37 16 34 H 0.14 -0.35 8.06 -52.48 -0.42 -0.77 16 35 H 0.14 -0.33 8.06 -52.48 -0.42 -0.76 16 36 H 0.13 0.06 4.91 -52.49 -0.26 -0.20 16 LS Contribution 310.88 15.07 4.68 4.68 Total: 0.00 -10.37 310.88 -10.78 -21.15 By element: Atomic # 1 Polarization: -6.37 SS G_CDS: -4.25 Total: -10.62 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.01 Total: -3.51 kcal Atomic # 7 Polarization: 1.95 SS G_CDS: -0.02 Total: 1.93 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -2.55 Total: -11.74 kcal Atomic # 9 Polarization: -0.26 SS G_CDS: 0.04 Total: -0.22 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: -5.15 Total: -6.57 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -0.53 Total: 4.90 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -10.37 -10.78 -21.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15744756_2726874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.955 kcal (2) G-P(sol) polarization free energy of solvation -10.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds