Wall clock time and date at job start Mon Mar 8 2021 12:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47353 * 2 1 4 4 C 1.50703 * 109.47019 * 119.99684 * 2 1 3 5 5 C 1.38209 * 120.00115 * 75.58533 * 4 2 1 6 6 S 1.76204 * 119.99953 * 359.97438 * 5 4 2 7 7 O 1.42098 * 106.40104 * 177.53589 * 6 5 4 8 8 O 1.42100 * 106.40204 * 310.46004 * 6 5 4 9 9 N 1.65602 * 107.21584 * 64.00001 * 6 5 4 10 10 C 1.46497 * 120.00433 * 63.45013 * 9 6 5 11 11 H 1.09003 * 112.84606 * 12.80404 * 10 9 6 12 12 C 1.53778 * 113.61491 * 143.99525 * 10 9 6 13 13 C 1.53779 * 87.08291 * 139.98414 * 12 10 9 14 14 H 1.09003 * 113.61507 * 89.11235 * 13 12 10 15 15 C 1.52994 * 113.61896 * 219.93601 * 13 12 10 16 16 F 1.39898 * 109.46927 * 300.00132 * 15 13 12 17 17 C 1.53782 * 113.61840 * 241.60469 * 10 9 6 18 18 C 1.38262 * 120.00209 * 179.97438 * 5 4 2 19 19 C 1.38206 * 119.99882 * 0.02562 * 18 5 4 20 20 C 1.38257 * 119.99914 * 359.97438 * 19 18 5 21 21 C 1.38209 * 120.00141 * 359.97438 * 20 19 18 22 22 H 0.96694 * 114.00167 * 64.96280 * 1 2 3 23 23 H 1.08995 * 109.47283 * 239.99568 * 2 1 3 24 24 H 1.48495 * 109.99878 * 59.99643 * 3 2 1 25 25 H 1.48494 * 110.00172 * 181.32054 * 3 2 1 26 26 H 0.97001 * 119.99663 * 243.45520 * 9 6 5 27 27 H 1.09002 * 113.61657 * 254.53256 * 12 10 9 28 28 H 1.09000 * 113.61629 * 25.43412 * 12 10 9 29 29 H 1.09000 * 109.47376 * 59.99919 * 15 13 12 30 30 H 1.08994 * 109.47471 * 179.97438 * 15 13 12 31 31 H 1.08996 * 113.61383 * 334.56581 * 17 10 9 32 32 H 1.08997 * 113.61276 * 105.46793 * 17 10 9 33 33 H 1.07999 * 120.00023 * 180.02562 * 18 5 4 34 34 H 1.08008 * 120.00306 * 179.97438 * 19 18 5 35 35 H 1.08003 * 119.99529 * 179.69943 * 20 19 18 36 36 H 1.08000 * 120.00042 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8808 -2.0897 1.3013 6 16 1.2283 -3.0177 -0.0471 7 8 1.3669 -4.3875 0.3043 8 8 -0.0189 -2.4223 -0.3777 9 7 2.2259 -2.7646 -1.3445 10 6 3.6220 -3.2055 -1.2921 11 1 3.8237 -3.8734 -0.4546 12 6 4.1544 -3.7263 -2.6375 13 6 5.4694 -3.0000 -2.3088 14 1 6.1775 -3.6110 -1.7490 15 6 6.1059 -2.3084 -3.5160 16 9 6.3894 -3.2593 -4.5022 17 6 4.6361 -2.0568 -1.4222 18 6 2.3421 -2.7415 2.4300 19 6 2.8533 -2.0136 3.4878 20 6 2.9039 -0.6338 3.4170 21 6 2.4437 0.0177 2.2883 22 1 -0.3933 0.3738 -0.8003 23 1 1.7924 -0.5139 -0.8899 24 1 1.5615 2.4679 1.2084 25 1 3.5346 1.7703 -0.0322 26 1 1.8858 -2.3244 -2.1391 27 1 4.2530 -4.8111 -2.6776 28 1 3.6329 -3.3155 -3.5020 29 1 5.4152 -1.5657 -3.9152 30 1 7.0290 -1.8172 -3.2083 31 1 4.2466 -1.1886 -1.9538 32 1 5.1229 -1.7957 -0.4826 33 1 2.3029 -3.8194 2.4850 34 1 3.2134 -2.5226 4.3697 35 1 3.2990 -0.0647 4.2456 36 1 2.4836 1.0955 2.2329 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15744756_2726874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:00:25 Heat of formation + Delta-G solvation = -92.770892 kcal Electronic energy + Delta-G solvation = -23776.403483 eV Core-core repulsion = 20076.741903 eV Total energy + Delta-G solvation = -3699.661581 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.49951 -40.74175 -40.20220 -38.50863 -37.39935 -36.97556 -34.48530 -33.00819 -32.52926 -29.12114 -26.96825 -26.67400 -24.54151 -23.52633 -22.75507 -21.16949 -20.41619 -19.16314 -18.57815 -18.27648 -17.74757 -17.21565 -16.99534 -16.77996 -16.66330 -16.09444 -15.89864 -15.81501 -15.29192 -15.16673 -14.83893 -14.25371 -13.94088 -13.90555 -13.64046 -13.58385 -13.42309 -13.27679 -13.17970 -13.14171 -12.94664 -12.33294 -12.18719 -12.15784 -11.86868 -11.69008 -11.53817 -11.19466 -10.61636 -10.52256 -10.24501 -10.14754 -4.97416 -0.75239 -0.38250 -0.01563 1.19478 1.61329 1.84157 1.91377 2.26447 2.62853 3.21464 3.26051 3.37536 3.43845 3.59037 3.65083 3.73512 3.77750 3.93600 3.95289 4.00191 4.16760 4.18625 4.24444 4.26034 4.42340 4.45252 4.65069 4.73365 4.76962 4.82782 4.86964 4.93364 5.02749 5.04544 5.10961 5.14449 5.46785 5.61388 6.01022 6.91889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.126 4.126 3 Si 0.782 3.218 4 C 0.015 3.985 5 C -0.665 4.665 6 S 2.698 3.302 7 O -0.993 6.993 8 O -0.954 6.954 9 N -1.092 6.092 10 C 0.118 3.882 11 H 0.113 0.887 12 C -0.136 4.136 13 C -0.143 4.143 14 H 0.104 0.896 15 C 0.065 3.935 16 F -0.238 7.238 17 C -0.138 4.138 18 C -0.037 4.037 19 C -0.135 4.135 20 C -0.059 4.059 21 C -0.163 4.163 22 H 0.401 0.599 23 H 0.094 0.906 24 H -0.291 1.291 25 H -0.267 1.267 26 H 0.431 0.569 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 5.520 -1.470 7.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.234 4.234 3 Si 0.685 3.315 4 C 0.013 3.987 5 C -0.752 4.752 6 S 2.789 3.211 7 O -0.983 6.983 8 O -0.943 6.943 9 N -0.854 5.854 10 C 0.011 3.989 11 H 0.131 0.869 12 C -0.176 4.176 13 C -0.163 4.163 14 H 0.122 0.878 15 C 0.010 3.990 16 F -0.219 7.219 17 C -0.178 4.178 18 C -0.056 4.056 19 C -0.154 4.154 20 C -0.077 4.077 21 C -0.181 4.181 22 H 0.252 0.748 23 H 0.112 0.888 24 H -0.218 1.218 25 H -0.193 1.193 26 H 0.270 0.730 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.168 0.832 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.377 5.194 -0.334 6.801 hybrid contribution 0.273 -0.235 0.434 0.564 sum 4.650 4.960 0.101 6.799 Atomic orbital electron populations 1.86615 1.15133 1.86916 1.46286 1.25421 0.88018 1.13390 0.96617 0.93926 0.77916 0.74369 0.85273 1.19236 0.92821 0.91597 0.95005 1.30750 1.19058 1.06326 1.19082 1.01624 0.73085 0.72957 0.73476 1.93549 1.86773 1.33596 1.84408 1.93654 1.39762 1.77901 1.83029 1.55334 1.22686 1.75966 1.31464 1.22474 0.78522 0.97492 1.00401 0.86865 1.23377 0.95511 1.01448 0.97224 1.23016 0.96682 0.99297 0.97278 0.87752 1.22182 1.02547 0.88990 0.85249 1.92741 1.95493 1.68504 1.65211 1.23563 0.95713 0.97666 1.00824 1.21314 0.91528 1.01282 0.91495 1.21707 0.99693 0.94336 0.99622 1.21816 0.93459 0.95238 0.97160 1.21383 1.01861 1.00100 0.94740 0.74777 0.88798 1.21849 1.19338 0.73003 0.90903 0.87941 0.88767 0.89410 0.87030 0.90017 0.83242 0.81997 0.82186 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.29 10.43 -127.37 -1.33 -2.62 16 2 C -0.13 0.13 1.84 71.24 0.13 0.26 16 3 Si 0.78 -3.58 30.30 68.60 2.08 -1.51 16 4 C 0.01 0.05 5.28 -19.87 -0.10 -0.05 16 5 C -0.67 -3.02 5.85 22.27 0.13 -2.88 16 6 S 2.70 13.89 4.94 -56.49 -0.28 13.61 16 7 O -0.99 -11.23 16.57 -128.00 -2.12 -13.36 16 8 O -0.95 -9.53 14.99 -119.14 -1.79 -11.32 16 9 N -1.09 3.69 4.49 -167.20 -0.75 2.94 16 10 C 0.12 -0.54 4.40 45.52 0.20 -0.34 16 11 H 0.11 -0.39 7.82 -2.39 -0.02 -0.41 16 12 C -0.14 0.65 7.30 31.12 0.23 0.88 16 13 C -0.14 0.93 4.13 -10.21 -0.04 0.89 16 14 H 0.10 -0.66 8.14 -2.39 -0.02 -0.67 16 15 C 0.07 -0.39 7.41 71.98 0.53 0.15 16 16 F -0.24 -0.56 17.22 44.97 0.77 0.21 16 17 C -0.14 1.14 7.45 31.18 0.23 1.37 16 18 C -0.04 -0.11 9.55 22.27 0.21 0.10 16 19 C -0.14 0.07 10.05 22.27 0.22 0.29 16 20 C -0.06 0.03 10.05 22.27 0.22 0.26 16 21 C -0.16 -0.41 8.66 22.27 0.19 -0.22 16 22 H 0.40 -2.92 8.86 -74.06 -0.66 -3.57 16 23 H 0.09 -0.62 5.85 -2.39 -0.01 -0.64 16 24 H -0.29 -0.74 6.73 99.48 0.67 -0.08 16 25 H -0.27 0.53 7.11 99.48 0.71 1.24 16 26 H 0.43 -3.69 8.67 -96.75 -0.84 -4.53 16 27 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.10 -0.68 8.10 -2.39 -0.02 -0.70 16 29 H 0.09 -0.92 7.96 -2.39 -0.02 -0.94 16 30 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H 0.11 -1.30 7.98 -2.39 -0.02 -1.32 16 32 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H 0.15 0.24 7.34 -2.91 -0.02 0.22 16 34 H 0.16 -1.00 8.06 -2.91 -0.02 -1.02 16 35 H 0.16 -1.01 8.06 -2.91 -0.02 -1.04 16 36 H 0.13 0.15 4.91 -2.91 -0.01 0.13 16 Total: 0.00 -24.68 310.88 -1.62 -26.30 By element: Atomic # 1 Polarization: -14.59 SS G_CDS: -0.37 Total: -14.96 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 2.16 Total: 0.70 kcal Atomic # 7 Polarization: 3.69 SS G_CDS: -0.75 Total: 2.94 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -5.23 Total: -27.30 kcal Atomic # 9 Polarization: -0.56 SS G_CDS: 0.77 Total: 0.21 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.08 Total: -1.51 kcal Atomic # 16 Polarization: 13.89 SS G_CDS: -0.28 Total: 13.61 kcal Total: -24.68 -1.62 -26.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15744756_2726874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.468 kcal (2) G-P(sol) polarization free energy of solvation -24.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds