Wall clock time and date at job start Mon Mar 8 2021 09:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.47152 * 2 1 4 4 C 1.50703 * 109.46794 * 119.99756 * 2 1 3 5 5 C 1.38233 * 120.00013 * 65.00219 * 4 2 1 6 6 C 1.38235 * 120.00501 * 180.02562 * 5 4 2 7 7 C 1.38239 * 119.99233 * 359.97438 * 6 5 4 8 8 S 1.76201 * 119.99491 * 179.97438 * 7 6 5 9 9 O 1.42105 * 106.40343 * 336.45736 * 8 7 6 10 10 O 1.42107 * 106.40025 * 203.53987 * 8 7 6 11 11 N 1.65592 * 107.21939 * 90.00017 * 8 7 6 12 12 C 1.46506 * 119.99896 * 65.00038 * 11 8 7 13 13 H 1.08992 * 112.90684 * 346.24963 * 12 11 8 14 14 C 1.54049 * 113.61276 * 117.62051 * 12 11 8 15 15 C 1.53781 * 87.08031 * 89.07129 * 14 12 11 16 16 H 1.09003 * 113.69043 * 270.86777 * 15 14 12 17 17 C 1.52991 * 113.61611 * 139.97702 * 15 14 12 18 18 F 1.39900 * 109.47459 * 202.50218 * 17 15 14 19 19 C 1.53781 * 87.08070 * 25.42738 * 15 14 12 20 20 C 1.38228 * 120.00284 * 0.25694 * 7 6 5 21 21 C 1.38227 * 119.99983 * 245.02187 * 4 2 1 22 22 H 0.96699 * 113.99637 * 60.00151 * 1 2 3 23 23 H 1.09002 * 109.47338 * 239.99545 * 2 1 3 24 24 H 1.48499 * 110.00026 * 298.67832 * 3 2 1 25 25 H 1.48497 * 110.00228 * 59.99947 * 3 2 1 26 26 H 1.08008 * 119.99940 * 359.97438 * 5 4 2 27 27 H 1.07994 * 120.00579 * 179.97438 * 6 5 4 28 28 H 0.97000 * 119.99920 * 244.99697 * 11 8 7 29 29 H 1.09005 * 113.62125 * 334.52173 * 14 12 11 30 30 H 1.08996 * 113.68970 * 203.62749 * 14 12 11 31 31 H 1.09008 * 109.47535 * 322.50394 * 17 15 14 32 32 H 1.09000 * 109.47633 * 82.50206 * 17 15 14 33 33 H 1.09002 * 113.61445 * 89.11830 * 19 15 14 34 34 H 1.09002 * 113.61408 * 219.93560 * 19 15 14 35 35 H 1.08003 * 120.00333 * 179.72752 * 20 7 6 36 36 H 1.08000 * 120.00189 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6847 -2.0601 1.3985 6 6 2.1449 -2.7117 2.5274 7 6 2.8522 -2.0135 3.4882 8 16 3.4383 -2.8438 4.9276 9 8 2.6080 -3.9843 5.0990 10 8 3.6049 -1.8466 5.9262 11 7 4.9530 -3.4160 4.5808 12 6 6.0470 -2.4786 4.3147 13 1 5.6999 -1.4605 4.1388 14 6 7.2010 -2.5724 5.3309 15 6 7.8190 -3.6392 4.4118 16 1 7.4897 -4.6540 4.6354 17 6 9.3384 -3.5245 4.2748 18 9 9.7481 -4.1449 3.0897 19 6 7.0449 -2.9806 3.2577 20 6 3.0947 -0.6628 3.3226 21 6 2.6382 -0.0122 2.1915 22 1 -0.3933 0.4417 -0.7651 23 1 1.7924 -0.5139 -0.8899 24 1 1.5880 2.4585 -1.2243 25 1 1.5615 2.4679 1.2084 26 1 1.1317 -2.6055 0.6479 27 1 1.9519 -3.7661 2.6588 28 1 5.1160 -4.3719 4.5540 29 1 6.8960 -2.9579 6.3038 30 1 7.7953 -1.6617 5.4039 31 1 9.6228 -2.4724 4.2512 32 1 9.8177 -4.0113 5.1241 33 1 7.5959 -2.1808 2.7628 34 1 6.6151 -3.6956 2.5562 35 1 3.6435 -0.1163 4.0754 36 1 2.8303 1.0425 2.0607 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15781664_13421422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:01 Heat of formation + Delta-G solvation = -98.706284 kcal Electronic energy + Delta-G solvation = -22649.478963 eV Core-core repulsion = 18949.560004 eV Total energy + Delta-G solvation = -3699.918959 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.082 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -48.52254 -40.70030 -40.46073 -38.23301 -37.91616 -36.86766 -34.27330 -33.21907 -32.26221 -29.31240 -27.32090 -26.83188 -24.24525 -23.86686 -22.88416 -21.11012 -20.45012 -19.22431 -18.74933 -18.54302 -17.36984 -17.18084 -17.05780 -16.81619 -16.70369 -16.53152 -15.89745 -15.85625 -15.42005 -14.99893 -14.68229 -14.42478 -14.26205 -14.08647 -14.03244 -13.95533 -13.51160 -13.11845 -13.06064 -12.94029 -12.86616 -12.48487 -12.35185 -11.95823 -11.91201 -11.80987 -11.67491 -11.25033 -10.75657 -10.65143 -10.40536 -10.18068 -5.13578 -0.74407 -0.38100 0.14974 1.06942 1.44195 1.79168 1.82365 2.26873 2.69776 3.08610 3.19191 3.22973 3.28659 3.45718 3.55821 3.59417 3.67039 3.73003 3.86552 3.98740 4.04006 4.07693 4.14250 4.18837 4.33168 4.50024 4.53357 4.55783 4.70005 4.76087 4.79603 4.88015 4.91776 4.93500 4.96337 5.21185 5.25091 5.63790 5.79441 6.23145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.087 4.087 3 Si 0.686 3.314 4 C -0.015 4.015 5 C -0.113 4.113 6 C -0.016 4.016 7 C -0.675 4.675 8 S 2.696 3.304 9 O -0.954 6.954 10 O -0.949 6.949 11 N -1.097 6.097 12 C 0.127 3.873 13 H 0.105 0.895 14 C -0.142 4.142 15 C -0.149 4.149 16 H 0.101 0.899 17 C 0.070 3.930 18 F -0.217 7.217 19 C -0.138 4.138 20 C -0.017 4.017 21 C -0.136 4.136 22 H 0.384 0.616 23 H 0.083 0.917 24 H -0.257 1.257 25 H -0.252 1.252 26 H 0.136 0.864 27 H 0.144 0.856 28 H 0.420 0.580 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.400 1.858 -3.801 6.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.196 4.196 3 Si 0.586 3.414 4 C -0.016 4.016 5 C -0.131 4.131 6 C -0.035 4.035 7 C -0.761 4.761 8 S 2.785 3.215 9 O -0.944 6.944 10 O -0.939 6.939 11 N -0.856 5.856 12 C 0.019 3.981 13 H 0.123 0.877 14 C -0.181 4.181 15 C -0.168 4.168 16 H 0.119 0.881 17 C 0.015 3.985 18 F -0.198 7.198 19 C -0.177 4.177 20 C -0.036 4.036 21 C -0.155 4.155 22 H 0.232 0.768 23 H 0.101 0.899 24 H -0.182 1.182 25 H -0.177 1.177 26 H 0.154 0.846 27 H 0.162 0.838 28 H 0.256 0.744 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.164 0.836 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.792 2.475 -2.483 5.165 hybrid contribution -1.081 -0.402 -1.406 1.819 sum 2.711 2.073 -3.890 5.175 Atomic orbital electron populations 1.86590 1.17188 1.80288 1.50025 1.24944 0.85028 1.11510 0.98119 0.95023 0.91455 0.74203 0.80694 1.19614 0.94015 0.94066 0.93889 1.21172 0.99607 0.94077 0.98282 1.20976 0.91261 1.00121 0.91177 1.30970 1.16245 1.06373 1.22558 1.01937 0.72157 0.73607 0.73800 1.93625 1.65452 1.50016 1.85315 1.93621 1.85365 1.60771 1.54164 1.55383 1.25019 1.16673 1.88506 1.21654 0.86972 0.92534 0.96958 0.87688 1.23466 0.96740 0.99293 0.98604 1.23226 0.94472 1.00594 0.98493 0.88090 1.21983 0.94297 0.98184 0.84049 1.92780 1.91710 1.85115 1.50213 1.23343 0.96765 1.01234 0.96347 1.20888 0.94499 0.92022 0.96189 1.21140 1.00078 1.00077 0.94156 0.76771 0.89883 1.18236 1.17657 0.84639 0.83850 0.74423 0.89861 0.88245 0.90517 0.90677 0.88301 0.90090 0.83626 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.16 12.81 -35.23 -0.45 -0.62 16 2 C -0.09 0.10 2.79 36.01 0.10 0.20 16 3 Si 0.69 -1.38 29.85 -169.99 -5.07 -6.45 16 4 C -0.02 0.00 5.38 -104.63 -0.56 -0.57 16 5 C -0.11 -0.05 9.69 -39.58 -0.38 -0.43 16 6 C -0.02 -0.01 9.52 -39.58 -0.38 -0.39 16 7 C -0.67 -0.32 5.95 -39.58 -0.24 -0.56 16 8 S 2.70 2.41 5.68 -107.50 -0.61 1.80 16 9 O -0.95 -3.77 17.28 -57.17 -0.99 -4.75 16 10 O -0.95 -3.38 17.04 -57.17 -0.97 -4.36 16 11 N -1.10 2.40 5.73 -4.08 -0.02 2.38 16 12 C 0.13 -0.38 4.45 -66.97 -0.30 -0.68 16 13 H 0.11 -0.44 7.80 -51.93 -0.41 -0.84 16 14 C -0.14 0.46 7.44 -25.78 -0.19 0.27 16 15 C -0.15 0.45 3.95 -89.81 -0.36 0.10 16 16 H 0.10 -0.31 8.11 -51.93 -0.42 -0.73 16 17 C 0.07 -0.17 7.40 37.15 0.27 0.11 16 18 F -0.22 -0.24 17.22 2.25 0.04 -0.21 16 19 C -0.14 0.46 7.29 -25.92 -0.19 0.27 16 20 C -0.02 0.00 9.28 -39.58 -0.37 -0.36 16 21 C -0.14 0.05 8.67 -39.58 -0.34 -0.29 16 22 H 0.38 -1.42 8.74 45.56 0.40 -1.03 16 23 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 24 H -0.26 -0.01 7.11 56.52 0.40 0.39 16 25 H -0.25 -0.29 7.05 56.52 0.40 0.10 16 26 H 0.14 -0.11 8.06 -52.48 -0.42 -0.53 16 27 H 0.14 -0.11 7.62 -52.49 -0.40 -0.51 16 28 H 0.42 -1.53 8.79 -34.46 -0.30 -1.83 16 29 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 30 H 0.10 -0.45 7.96 -51.93 -0.41 -0.86 16 31 H 0.08 -0.30 7.94 -51.92 -0.41 -0.71 16 32 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 33 H 0.10 -0.40 8.10 -51.93 -0.42 -0.82 16 34 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 35 H 0.15 -0.30 7.61 -52.48 -0.40 -0.70 16 36 H 0.14 -0.32 4.87 -52.49 -0.26 -0.58 16 LS Contribution 319.57 15.07 4.82 4.82 Total: 0.00 -10.49 319.57 -10.53 -21.03 By element: Atomic # 1 Polarization: -6.96 SS G_CDS: -4.34 Total: -11.30 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.93 Total: -2.33 kcal Atomic # 7 Polarization: 2.40 SS G_CDS: -0.02 Total: 2.38 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -2.41 Total: -9.73 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 0.04 Total: -0.21 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: -5.07 Total: -6.45 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -0.61 Total: 1.80 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -10.49 -10.53 -21.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15781664_13421422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.681 kcal (2) G-P(sol) polarization free energy of solvation -10.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds