Wall clock time and date at job start Mon Mar 8 2021 09:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.47152 * 2 1 4 4 C 1.50703 * 109.46794 * 119.99756 * 2 1 3 5 5 C 1.38233 * 120.00013 * 65.00219 * 4 2 1 6 6 C 1.38235 * 120.00501 * 180.02562 * 5 4 2 7 7 C 1.38239 * 119.99233 * 359.97438 * 6 5 4 8 8 S 1.76201 * 119.99491 * 179.97438 * 7 6 5 9 9 O 1.42105 * 106.40343 * 336.45736 * 8 7 6 10 10 O 1.42107 * 106.40025 * 203.53987 * 8 7 6 11 11 N 1.65592 * 107.21939 * 90.00017 * 8 7 6 12 12 C 1.46506 * 119.99896 * 65.00038 * 11 8 7 13 13 H 1.08992 * 112.90684 * 346.24963 * 12 11 8 14 14 C 1.54049 * 113.61276 * 117.62051 * 12 11 8 15 15 C 1.53781 * 87.08031 * 89.07129 * 14 12 11 16 16 H 1.09003 * 113.69043 * 270.86777 * 15 14 12 17 17 C 1.52991 * 113.61611 * 139.97702 * 15 14 12 18 18 F 1.39900 * 109.47459 * 202.50218 * 17 15 14 19 19 C 1.53781 * 87.08070 * 25.42738 * 15 14 12 20 20 C 1.38228 * 120.00284 * 0.25694 * 7 6 5 21 21 C 1.38227 * 119.99983 * 245.02187 * 4 2 1 22 22 H 0.96699 * 113.99637 * 60.00151 * 1 2 3 23 23 H 1.09002 * 109.47338 * 239.99545 * 2 1 3 24 24 H 1.48499 * 110.00026 * 298.67832 * 3 2 1 25 25 H 1.48497 * 110.00228 * 59.99947 * 3 2 1 26 26 H 1.08008 * 119.99940 * 359.97438 * 5 4 2 27 27 H 1.07994 * 120.00579 * 179.97438 * 6 5 4 28 28 H 0.97000 * 119.99920 * 244.99697 * 11 8 7 29 29 H 1.09005 * 113.62125 * 334.52173 * 14 12 11 30 30 H 1.08996 * 113.68970 * 203.62749 * 14 12 11 31 31 H 1.09008 * 109.47535 * 322.50394 * 17 15 14 32 32 H 1.09000 * 109.47633 * 82.50206 * 17 15 14 33 33 H 1.09002 * 113.61445 * 89.11830 * 19 15 14 34 34 H 1.09002 * 113.61408 * 219.93560 * 19 15 14 35 35 H 1.08003 * 120.00333 * 179.72752 * 20 7 6 36 36 H 1.08000 * 120.00189 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6847 -2.0601 1.3985 6 6 2.1449 -2.7117 2.5274 7 6 2.8522 -2.0135 3.4882 8 16 3.4383 -2.8438 4.9276 9 8 2.6080 -3.9843 5.0990 10 8 3.6049 -1.8466 5.9262 11 7 4.9530 -3.4160 4.5808 12 6 6.0470 -2.4786 4.3147 13 1 5.6999 -1.4605 4.1388 14 6 7.2010 -2.5724 5.3309 15 6 7.8190 -3.6392 4.4118 16 1 7.4897 -4.6540 4.6354 17 6 9.3384 -3.5245 4.2748 18 9 9.7481 -4.1449 3.0897 19 6 7.0449 -2.9806 3.2577 20 6 3.0947 -0.6628 3.3226 21 6 2.6382 -0.0122 2.1915 22 1 -0.3933 0.4417 -0.7651 23 1 1.7924 -0.5139 -0.8899 24 1 1.5880 2.4585 -1.2243 25 1 1.5615 2.4679 1.2084 26 1 1.1317 -2.6055 0.6479 27 1 1.9519 -3.7661 2.6588 28 1 5.1160 -4.3719 4.5540 29 1 6.8960 -2.9579 6.3038 30 1 7.7953 -1.6617 5.4039 31 1 9.6228 -2.4724 4.2512 32 1 9.8177 -4.0113 5.1241 33 1 7.5959 -2.1808 2.7628 34 1 6.6151 -3.6956 2.5562 35 1 3.6435 -0.1163 4.0754 36 1 2.8303 1.0425 2.0607 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15781664_13421422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:01 Heat of formation + Delta-G solvation = -101.748061 kcal Electronic energy + Delta-G solvation = -22649.610864 eV Core-core repulsion = 18949.560004 eV Total energy + Delta-G solvation = -3700.050860 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.46466 -40.64639 -40.23306 -38.41353 -37.85327 -37.05649 -34.13407 -33.18544 -32.22318 -29.10407 -27.25790 -26.55682 -24.17649 -23.68020 -22.84593 -21.01840 -20.32471 -19.19395 -18.67035 -18.59596 -17.32866 -17.02328 -16.99113 -16.71565 -16.60166 -16.37894 -15.89600 -15.83529 -15.39033 -14.84095 -14.62747 -14.36789 -14.20347 -14.02228 -13.98186 -13.85164 -13.33328 -13.26246 -13.22643 -12.94914 -12.87402 -12.44596 -12.15681 -11.92807 -11.90582 -11.58803 -11.47570 -11.02273 -10.67779 -10.48453 -10.34811 -10.15251 -4.98323 -0.77713 -0.39385 0.17852 1.20749 1.56050 1.84778 1.90963 2.29130 2.66600 3.18720 3.23111 3.47473 3.51111 3.64398 3.70486 3.75920 3.81447 3.84861 4.09116 4.16564 4.23081 4.25024 4.29821 4.37709 4.46457 4.59154 4.74413 4.82469 4.86720 4.91867 4.94370 4.96781 5.05720 5.16431 5.20570 5.24870 5.51724 5.68184 5.99937 6.49428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.096 4.096 3 Si 0.768 3.232 4 C -0.027 4.027 5 C -0.123 4.123 6 C -0.028 4.028 7 C -0.678 4.678 8 S 2.714 3.286 9 O -0.989 6.989 10 O -0.978 6.978 11 N -1.088 6.088 12 C 0.117 3.883 13 H 0.119 0.881 14 C -0.140 4.140 15 C -0.150 4.150 16 H 0.097 0.903 17 C 0.062 3.938 18 F -0.238 7.238 19 C -0.134 4.134 20 C -0.023 4.023 21 C -0.142 4.142 22 H 0.399 0.601 23 H 0.106 0.894 24 H -0.284 1.284 25 H -0.296 1.296 26 H 0.144 0.856 27 H 0.149 0.851 28 H 0.427 0.573 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.163 0.837 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 2.476 -4.443 7.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.205 4.205 3 Si 0.673 3.327 4 C -0.027 4.027 5 C -0.142 4.142 6 C -0.047 4.047 7 C -0.766 4.766 8 S 2.805 3.195 9 O -0.980 6.980 10 O -0.968 6.968 11 N -0.848 5.848 12 C 0.010 3.990 13 H 0.136 0.864 14 C -0.180 4.180 15 C -0.169 4.169 16 H 0.116 0.884 17 C 0.008 3.992 18 F -0.220 7.220 19 C -0.173 4.173 20 C -0.042 4.042 21 C -0.160 4.160 22 H 0.250 0.750 23 H 0.124 0.876 24 H -0.211 1.211 25 H -0.224 1.224 26 H 0.162 0.838 27 H 0.167 0.833 28 H 0.264 0.736 29 H 0.093 0.907 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.180 0.820 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.567 3.062 -3.128 6.326 hybrid contribution -1.328 -0.561 -1.228 1.893 sum 3.240 2.501 -4.356 5.977 Atomic orbital electron populations 1.86543 1.18088 1.80837 1.51332 1.25172 0.84482 1.12370 0.98440 0.94117 0.90084 0.71777 0.76700 1.19893 0.94007 0.94204 0.94599 1.21355 0.99859 0.94487 0.98516 1.21145 0.91486 1.00641 0.91413 1.30850 1.16821 1.06798 1.22166 1.01104 0.72243 0.72582 0.73574 1.93571 1.67016 1.51305 1.86068 1.93579 1.85932 1.61517 1.55781 1.55098 1.24134 1.17289 1.88298 1.21886 0.86747 0.92961 0.97405 0.86354 1.23512 0.96621 0.99852 0.97969 1.23218 0.94192 1.00621 0.98833 0.88442 1.22215 0.94668 0.99105 0.83240 1.92734 1.91982 1.85639 1.51616 1.23352 0.96468 1.01405 0.96090 1.21168 0.94471 0.91843 0.96686 1.21389 0.99800 1.00907 0.93927 0.75020 0.87617 1.21106 1.22412 0.83826 0.83283 0.73576 0.90661 0.86600 0.88785 0.90006 0.87221 0.90482 0.81972 0.82841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.18 12.81 -148.98 -1.91 -2.09 16 2 C -0.10 0.30 2.79 71.24 0.20 0.50 16 3 Si 0.77 -3.49 29.85 68.60 2.05 -1.44 16 4 C -0.03 -0.01 5.38 -19.87 -0.11 -0.11 16 5 C -0.12 -0.13 9.69 22.27 0.22 0.09 16 6 C -0.03 -0.04 9.52 22.27 0.21 0.17 16 7 C -0.68 -0.91 5.95 22.27 0.13 -0.78 16 8 S 2.71 7.03 5.68 -56.49 -0.32 6.70 16 9 O -0.99 -9.16 17.28 -128.00 -2.21 -11.37 16 10 O -0.98 -7.64 17.04 -128.00 -2.18 -9.82 16 11 N -1.09 4.42 5.73 -166.81 -0.96 3.47 16 12 C 0.12 -0.77 4.45 45.61 0.20 -0.57 16 13 H 0.12 -1.10 7.80 -2.39 -0.02 -1.12 16 14 C -0.14 1.01 7.44 31.21 0.23 1.24 16 15 C -0.15 0.97 3.95 -10.27 -0.04 0.93 16 16 H 0.10 -0.58 8.11 -2.39 -0.02 -0.60 16 17 C 0.06 -0.34 7.40 71.98 0.53 0.20 16 18 F -0.24 -0.54 17.22 44.97 0.77 0.23 16 19 C -0.13 0.98 7.29 31.12 0.23 1.21 16 20 C -0.02 0.01 9.28 22.27 0.21 0.22 16 21 C -0.14 0.16 8.67 22.27 0.19 0.35 16 22 H 0.40 -3.09 8.74 -74.06 -0.65 -3.74 16 23 H 0.11 -0.82 7.96 -2.39 -0.02 -0.84 16 24 H -0.28 0.06 7.11 99.48 0.71 0.76 16 25 H -0.30 -0.84 7.05 99.48 0.70 -0.14 16 26 H 0.14 -0.21 8.06 -2.91 -0.02 -0.24 16 27 H 0.15 -0.08 7.62 -2.91 -0.02 -0.10 16 28 H 0.43 -2.87 8.79 -96.75 -0.85 -3.72 16 29 H 0.07 -0.39 8.14 -2.38 -0.02 -0.41 16 30 H 0.12 -1.22 7.96 -2.39 -0.02 -1.24 16 31 H 0.09 -0.84 7.94 -2.38 -0.02 -0.86 16 32 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.11 -1.02 8.10 -2.39 -0.02 -1.04 16 34 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H 0.16 -0.76 7.61 -2.91 -0.02 -0.79 16 36 H 0.15 -0.83 4.87 -2.91 -0.01 -0.84 16 Total: 0.00 -23.97 319.57 -2.89 -26.86 By element: Atomic # 1 Polarization: -15.64 SS G_CDS: -0.34 Total: -15.99 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 2.21 Total: 3.45 kcal Atomic # 7 Polarization: 4.42 SS G_CDS: -0.96 Total: 3.47 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -6.30 Total: -23.28 kcal Atomic # 9 Polarization: -0.54 SS G_CDS: 0.77 Total: 0.23 kcal Atomic # 14 Polarization: -3.49 SS G_CDS: 2.05 Total: -1.44 kcal Atomic # 16 Polarization: 7.03 SS G_CDS: -0.32 Total: 6.70 kcal Total: -23.97 -2.89 -26.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15781664_13421422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.889 kcal (2) G-P(sol) polarization free energy of solvation -23.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds