Wall clock time and date at job start Mon Mar 8 2021 10:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35892 * 117.00045 * 2 1 4 4 C 1.38722 * 120.05379 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.02722 * 359.97438 * 4 3 2 6 6 H 1.09005 * 112.84917 * 11.20241 * 5 4 3 7 7 C 1.53783 * 113.61253 * 142.50312 * 5 4 3 8 8 C 1.53776 * 87.08036 * 139.98141 * 7 5 4 9 9 H 1.08998 * 113.69159 * 220.00793 * 8 7 5 10 10 N 1.46506 * 113.61503 * 89.11933 * 8 7 5 11 11 S 1.65598 * 120.00151 * 117.50159 * 10 8 7 12 12 O 1.42101 * 106.40244 * 311.45911 * 11 10 8 13 13 O 1.42096 * 106.39939 * 178.53837 * 11 10 8 14 14 C 1.76204 * 107.21836 * 65.00002 * 11 10 8 15 15 C 1.38237 * 120.00096 * 89.99939 * 14 11 10 16 16 C 1.38227 * 119.99741 * 179.97438 * 15 14 11 17 17 C 1.38230 * 120.00385 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00069 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47055 * 300.00206 * 18 17 16 20 20 Si 1.86304 * 109.46911 * 180.02562 * 18 17 16 21 21 C 1.38232 * 119.99842 * 0.25216 * 17 16 15 22 22 C 1.38233 * 119.99798 * 270.01993 * 14 11 10 23 23 C 1.53773 * 87.08346 * 334.56784 * 8 7 5 24 24 C 1.38163 * 119.94017 * 180.27413 * 4 3 2 25 25 C 1.38246 * 120.05833 * 359.49389 * 24 4 3 26 26 C 1.38290 * 120.10923 * 0.50545 * 25 24 4 27 27 C 1.38122 * 120.05717 * 359.74689 * 26 25 24 28 28 H 1.09000 * 109.47260 * 299.99997 * 1 2 3 29 29 H 1.08993 * 109.47009 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.08997 * 113.61696 * 25.43057 * 7 5 4 32 32 H 1.08999 * 113.61385 * 254.52902 * 7 5 4 33 33 H 0.96997 * 119.99695 * 297.50115 * 10 8 7 34 34 H 1.08006 * 119.99584 * 359.97438 * 15 14 11 35 35 H 1.08004 * 119.99469 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47152 * 60.00014 * 18 17 16 37 37 H 0.96703 * 114.00193 * 180.02562 * 19 18 17 38 38 H 1.48501 * 109.99997 * 298.67752 * 20 18 17 39 39 H 1.48495 * 110.00011 * 60.00027 * 20 18 17 40 40 H 1.08001 * 120.00311 * 179.72122 * 21 17 16 41 41 H 1.07996 * 120.00408 * 0.02562 * 22 14 11 42 42 H 1.09001 * 113.62031 * 139.97928 * 23 8 7 43 43 H 1.09003 * 113.61575 * 270.88948 * 23 8 7 44 44 H 1.08001 * 119.96672 * 179.75011 * 24 4 3 45 45 H 1.08001 * 119.94590 * 180.25980 * 25 24 4 46 46 H 1.07997 * 119.96793 * 179.77263 * 26 25 24 47 47 H 1.07993 * 120.02725 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4312 1.2847 -0.0005 5 6 4.2537 0.0220 -0.0005 6 1 3.6590 -0.8705 -0.1952 7 6 5.5263 0.1159 -0.8588 8 6 6.2407 -0.6675 0.2551 9 1 7.2500 -0.3121 0.4625 10 7 6.1730 -2.1213 0.0863 11 16 7.5632 -2.9959 -0.1248 12 8 8.3083 -2.3279 -1.1337 13 8 7.1695 -4.3577 -0.2225 14 6 8.4994 -2.8541 1.3613 15 6 8.3212 -3.7707 2.3806 16 6 9.0560 -3.6597 3.5461 17 6 9.9686 -2.6318 3.6926 18 6 10.7693 -2.5105 4.9636 19 8 9.8821 -2.3450 6.0715 20 14 11.8989 -1.0336 4.8472 21 6 10.1427 -1.7119 2.6756 22 6 9.4117 -1.8260 1.5079 23 6 5.1808 -0.1094 1.2193 24 6 4.0560 2.5169 0.0052 25 6 3.3020 3.6757 0.0009 26 6 1.9209 3.6047 0.0014 27 6 1.2914 2.3752 0.0009 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 5.8956 1.1339 -0.9824 32 1 5.4588 -0.4282 -1.8008 33 1 5.3139 -2.5714 0.0982 34 1 7.6078 -4.5735 2.2663 35 1 8.9164 -4.3756 4.3427 36 1 11.3639 -3.4129 5.1060 37 1 10.3296 -2.2598 6.9245 38 1 12.8477 -1.2076 3.7182 39 1 11.0999 0.2029 4.6533 40 1 10.8524 -0.9063 2.7918 41 1 9.5504 -1.1095 0.7119 42 1 4.8341 -0.8352 1.9550 43 1 5.4555 0.8472 1.6639 44 1 5.1345 2.5750 0.0089 45 1 3.7923 4.6380 0.0011 46 1 1.3341 4.5113 0.0017 47 1 0.2129 2.3203 0.0009 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15784318_13421422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:23:46 Heat of formation + Delta-G solvation = -51.555457 kcal Electronic energy + Delta-G solvation = -31893.338786 eV Core-core repulsion = 27522.256424 eV Total energy + Delta-G solvation = -4371.082362 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.122 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -41.59439 -40.70386 -40.04561 -38.24926 -38.10433 -37.78107 -36.83852 -34.36458 -33.21740 -32.28674 -31.58084 -31.06589 -28.24478 -27.28964 -26.70488 -26.09310 -24.19794 -23.20314 -22.87397 -22.68459 -20.87952 -20.23986 -19.34697 -18.97347 -18.60975 -18.44550 -17.36323 -17.24911 -17.02037 -16.74304 -16.72140 -16.69151 -16.01741 -15.86741 -15.43726 -15.31374 -15.27010 -15.07709 -14.76762 -14.52459 -14.37265 -14.18690 -13.98450 -13.93284 -13.66006 -13.44883 -13.31390 -13.07902 -13.01619 -12.97563 -12.83481 -12.67846 -12.42031 -12.24727 -12.17901 -12.09730 -11.90970 -11.72467 -11.66904 -11.18393 -10.73103 -10.53928 -10.29805 -10.19879 -9.76129 -9.05685 -5.11508 -0.71564 -0.38325 0.11897 0.35213 0.50685 1.09652 1.50293 1.81493 1.86057 2.26973 2.32269 2.73809 2.77176 3.10854 3.23445 3.41960 3.57549 3.60619 3.61781 3.66045 3.74177 3.86860 3.94784 3.99411 4.03543 4.05843 4.15453 4.16363 4.19068 4.20132 4.30558 4.41405 4.44771 4.51331 4.55293 4.62997 4.69582 4.73199 4.73542 4.85614 4.90225 4.92838 4.96402 5.05107 5.08503 5.18000 5.34823 5.40968 5.56289 5.61629 5.63171 5.82222 5.88681 6.42088 6.43123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.130 3.870 4 C -0.103 4.103 5 C -0.064 4.064 6 H 0.104 0.896 7 C -0.144 4.144 8 C 0.126 3.874 9 H 0.101 0.899 10 N -1.096 6.096 11 S 2.696 3.304 12 O -0.949 6.949 13 O -0.954 6.954 14 C -0.675 4.675 15 C -0.014 4.014 16 C -0.110 4.110 17 C -0.018 4.018 18 C -0.083 4.083 19 O -0.543 6.543 20 Si 0.687 3.313 21 C -0.145 4.145 22 C -0.015 4.015 23 C -0.137 4.137 24 C -0.081 4.081 25 C -0.154 4.154 26 C -0.084 4.084 27 C -0.207 4.207 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.421 0.579 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.082 0.918 37 H 0.386 0.614 38 H -0.252 1.252 39 H -0.248 1.248 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 2.970 5.708 6.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.085 3.915 4 C -0.103 4.103 5 C -0.082 4.082 6 H 0.123 0.877 7 C -0.183 4.183 8 C 0.018 3.982 9 H 0.119 0.881 10 N -0.855 5.855 11 S 2.785 3.215 12 O -0.939 6.939 13 O -0.944 6.944 14 C -0.761 4.761 15 C -0.034 4.034 16 C -0.129 4.129 17 C -0.018 4.018 18 C -0.193 4.193 19 O -0.350 6.350 20 Si 0.587 3.413 21 C -0.164 4.164 22 C -0.034 4.034 23 C -0.176 4.176 24 C -0.099 4.099 25 C -0.173 4.173 26 C -0.102 4.102 27 C -0.225 4.225 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.257 0.743 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.234 0.766 38 H -0.177 1.177 39 H -0.172 1.172 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.189 3.016 3.992 5.006 hybrid contribution -0.888 -0.163 0.566 1.066 sum -0.699 2.852 4.558 5.422 Atomic orbital electron populations 1.23082 0.78202 1.04160 1.01401 1.86052 1.21424 1.26766 1.88581 1.18871 0.91830 0.84291 0.96525 1.19043 0.90141 0.95353 1.05811 1.21374 0.94021 0.95953 0.96848 0.87739 1.23592 0.95170 1.01255 0.98287 1.21629 0.99898 0.78936 0.97732 0.88121 1.55347 1.24185 1.15694 1.90245 1.01928 0.72813 0.72944 0.73797 1.93619 1.71051 1.75573 1.53689 1.93619 1.82099 1.32429 1.86222 1.31019 1.16400 1.05985 1.22723 1.21013 0.96003 0.95317 0.91021 1.21168 0.95642 0.98343 0.97726 1.19731 0.94798 0.93850 0.93448 1.24828 0.97524 1.10408 0.86544 1.86475 1.35135 1.96369 1.17017 0.95106 0.80557 0.77290 0.88325 1.21008 1.01387 0.99248 0.94710 1.20849 0.91312 0.94615 0.96624 1.23469 0.95417 1.02123 0.96553 1.20869 1.00011 0.91015 0.97973 1.21077 0.93940 0.98489 1.03746 1.20974 0.94790 0.97038 0.97375 1.21264 1.00127 0.92424 1.08731 0.92607 0.92589 0.88071 0.88444 0.90046 0.74311 0.83662 0.84301 0.89990 0.76567 1.17678 1.17196 0.85454 0.83735 0.90250 0.88558 0.85244 0.85783 0.85781 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 9.81 101.05 0.99 0.96 16 2 O -0.31 -0.55 9.43 -19.40 -0.18 -0.73 16 3 C 0.13 0.26 6.66 -39.21 -0.26 0.00 16 4 C -0.10 -0.13 5.30 -104.47 -0.55 -0.69 16 5 C -0.06 0.00 3.69 -90.96 -0.34 -0.34 16 6 H 0.10 0.05 7.29 -51.93 -0.38 -0.32 16 7 C -0.14 0.07 7.25 -25.92 -0.19 -0.12 16 8 C 0.13 -0.11 4.44 -67.12 -0.30 -0.40 16 9 H 0.10 -0.19 7.78 -51.93 -0.40 -0.59 16 10 N -1.10 0.48 5.73 -4.20 -0.02 0.46 16 11 S 2.70 5.73 5.68 -107.50 -0.61 5.12 16 12 O -0.95 -4.51 17.04 -57.17 -0.97 -5.48 16 13 O -0.95 -4.54 17.28 -57.17 -0.99 -5.53 16 14 C -0.67 -1.21 5.95 -39.58 -0.24 -1.45 16 15 C -0.01 -0.02 9.52 -39.59 -0.38 -0.40 16 16 C -0.11 -0.16 9.61 -39.59 -0.38 -0.54 16 17 C -0.02 -0.03 5.42 -104.63 -0.57 -0.60 16 18 C -0.08 0.08 2.81 36.01 0.10 0.18 16 19 O -0.54 0.50 12.74 -35.23 -0.45 0.05 16 20 Si 0.69 -1.30 29.79 -169.99 -5.06 -6.36 16 21 C -0.15 -0.26 8.67 -39.58 -0.34 -0.60 16 22 C -0.01 -0.02 9.25 -39.58 -0.37 -0.39 16 23 C -0.14 0.14 7.33 -25.92 -0.19 -0.05 16 24 C -0.08 -0.03 8.59 -39.61 -0.34 -0.37 16 25 C -0.15 -0.06 10.04 -39.56 -0.40 -0.46 16 26 C -0.08 -0.05 10.04 -39.60 -0.40 -0.45 16 27 C -0.21 -0.23 9.04 -39.43 -0.36 -0.59 16 28 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 29 H 0.06 -0.11 7.66 -51.93 -0.40 -0.50 16 30 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 31 H 0.10 -0.15 6.33 -51.93 -0.33 -0.48 16 32 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.42 -0.80 8.79 -34.47 -0.30 -1.10 16 34 H 0.15 -0.01 7.62 -52.48 -0.40 -0.41 16 35 H 0.14 -0.02 8.06 -52.48 -0.42 -0.44 16 36 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 37 H 0.39 -2.28 8.74 45.56 0.40 -1.88 16 38 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 39 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 40 H 0.13 0.10 4.88 -52.49 -0.26 -0.16 16 41 H 0.14 -0.02 7.62 -52.49 -0.40 -0.42 16 42 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 43 H 0.10 -0.16 7.71 -51.93 -0.40 -0.56 16 44 H 0.13 -0.21 6.67 -52.49 -0.35 -0.56 16 45 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 46 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 47 H 0.13 -0.07 6.30 -52.49 -0.33 -0.40 16 LS Contribution 396.96 15.07 5.98 5.98 Total: 0.00 -11.22 396.96 -12.90 -24.12 By element: Atomic # 1 Polarization: -5.24 SS G_CDS: -6.10 Total: -11.34 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -4.50 Total: -6.29 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -0.02 Total: 0.46 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -2.59 Total: -11.69 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -5.06 Total: -6.36 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -0.61 Total: 5.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -11.22 -12.90 -24.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15784318_13421422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.431 kcal (2) G-P(sol) polarization free energy of solvation -11.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds