Wall clock time and date at job start Mon Mar 8 2021 10:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35898 * 116.99447 * 2 1 4 4 C 1.38716 * 120.05064 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.02784 * 359.95124 * 4 3 2 6 6 H 1.08997 * 112.85044 * 348.80332 * 5 4 3 7 7 C 1.53782 * 113.61511 * 120.00533 * 5 4 3 8 8 C 1.53772 * 87.08254 * 139.97799 * 7 5 4 9 9 H 1.08995 * 113.61429 * 219.93176 * 8 7 5 10 10 N 1.46508 * 113.61519 * 89.11481 * 8 7 5 11 11 S 1.65600 * 119.99855 * 143.38542 * 10 8 7 12 12 O 1.42104 * 106.40297 * 312.83069 * 11 10 8 13 13 O 1.42104 * 106.39937 * 179.91310 * 11 10 8 14 14 C 1.76201 * 107.21853 * 66.37373 * 11 10 8 15 15 C 1.33384 * 122.53568 * 67.07699 * 14 11 10 16 16 C 1.50698 * 125.20759 * 0.02562 * 15 14 11 17 17 O 1.42905 * 109.47113 * 319.18612 * 16 15 14 18 18 Si 1.86302 * 109.47162 * 199.18914 * 16 15 14 19 19 S 1.75890 * 109.59008 * 179.90558 * 15 14 11 20 20 C 1.75881 * 90.96808 * 0.29746 * 19 15 14 21 21 C 1.33392 * 109.59698 * 359.83041 * 20 19 15 22 22 C 1.53775 * 87.17700 * 334.52339 * 8 7 5 23 23 C 1.38164 * 119.94324 * 180.23239 * 4 3 2 24 24 C 1.38247 * 120.05246 * 359.46268 * 23 4 3 25 25 C 1.38288 * 120.11409 * 0.56166 * 24 23 4 26 26 C 1.38120 * 120.05488 * 359.69124 * 25 24 23 27 27 H 1.09001 * 109.46985 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46995 * 300.00214 * 1 2 3 29 29 H 1.08992 * 109.47165 * 60.00354 * 1 2 3 30 30 H 1.08995 * 113.61295 * 25.42824 * 7 5 4 31 31 H 1.08996 * 113.68689 * 254.54127 * 7 5 4 32 32 H 0.96994 * 119.99548 * 323.38436 * 10 8 7 33 33 H 1.08998 * 109.47255 * 79.18760 * 16 15 14 34 34 H 0.96701 * 113.99946 * 294.02990 * 17 16 15 35 35 H 1.48491 * 110.00338 * 58.67835 * 18 16 15 36 36 H 1.48499 * 110.00049 * 180.02562 * 18 16 15 37 37 H 1.08006 * 125.20128 * 179.86797 * 20 19 15 38 38 H 1.07993 * 122.53991 * 180.02562 * 21 20 19 39 39 H 1.08997 * 113.61573 * 140.01831 * 22 8 7 40 40 H 1.08998 * 113.61706 * 270.92957 * 22 8 7 41 41 H 1.07999 * 119.97416 * 179.74488 * 23 4 3 42 42 H 1.08003 * 119.94192 * 180.25338 * 24 23 4 43 43 H 1.08000 * 119.97230 * 179.72708 * 25 24 23 44 44 H 1.07992 * 120.03102 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4311 1.2849 -0.0005 5 6 4.2538 0.0222 0.0000 6 1 3.6593 -0.8702 0.1958 7 6 5.1800 -0.1101 -1.2204 8 6 6.2406 -0.6674 -0.2565 9 1 7.2497 -0.3121 -0.4649 10 7 6.1731 -2.1210 -0.0864 11 16 7.5660 -3.0002 0.0844 12 8 8.4498 -2.5538 -0.9348 13 8 7.1688 -4.3569 0.2295 14 6 8.2956 -2.5288 1.6174 15 6 7.7324 -2.8042 2.7948 16 6 6.4294 -3.5371 2.9843 17 8 5.4876 -3.0957 2.0043 18 14 5.7623 -3.1874 4.6883 19 16 8.7450 -2.1842 4.0924 20 6 9.9061 -1.5596 2.9282 21 6 9.4937 -1.8395 1.6909 22 6 5.5293 0.1169 0.8587 23 6 4.0560 2.5172 0.0043 24 6 3.3018 3.6758 -0.0015 25 6 1.9208 3.6048 -0.0005 26 6 1.2914 2.3753 -0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8899 30 1 5.4543 0.8460 -1.6660 31 1 4.8340 -0.8361 -1.9561 32 1 5.3125 -2.5683 -0.0738 33 1 6.5954 -4.6085 2.8719 34 1 5.2224 -2.1709 2.1022 35 1 5.5616 -1.7268 4.8653 36 1 4.4776 -3.9050 4.8879 37 1 10.8144 -1.0309 3.1771 38 1 10.0525 -1.5506 0.8131 39 1 5.4641 -0.4264 1.8013 40 1 5.8990 1.1351 0.9805 41 1 5.1344 2.5753 0.0081 42 1 3.7921 4.6381 -0.0018 43 1 1.3339 4.5114 -0.0006 44 1 0.2128 2.3203 0.0003 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15784318_14772022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:23:54 Heat of formation + Delta-G solvation = -33.004372 kcal Electronic energy + Delta-G solvation = -32011.405419 eV Core-core repulsion = 27730.279740 eV Total energy + Delta-G solvation = -4281.125680 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.079 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.58618 -40.12767 -39.60838 -38.42478 -38.15293 -37.48832 -36.94041 -34.23586 -31.82017 -31.53061 -31.05388 -28.17769 -27.54238 -26.65358 -26.03263 -24.38285 -23.17077 -22.64925 -21.80584 -20.52689 -19.91640 -19.45025 -19.05859 -18.65465 -18.12879 -17.36507 -17.12847 -16.90732 -16.69733 -16.68343 -16.44856 -16.05820 -15.48466 -15.38382 -15.23458 -15.16668 -14.93646 -14.45995 -14.28391 -14.10010 -14.08495 -13.84076 -13.61398 -13.41305 -13.28497 -13.24874 -13.14487 -12.89675 -12.79296 -12.64542 -12.47510 -12.31900 -12.18887 -12.05654 -11.82279 -11.65604 -11.56817 -11.16436 -11.11470 -10.39423 -10.09319 -9.76161 -9.69732 -9.07863 -5.16020 -0.68739 -0.46387 0.34685 0.39255 0.48443 0.66835 1.05568 1.15063 1.50013 1.80505 2.06211 2.36532 2.70924 2.76399 3.07670 3.27407 3.43895 3.51858 3.65937 3.68818 3.92029 3.99579 4.05219 4.11383 4.20570 4.24866 4.29105 4.29620 4.31919 4.44838 4.45530 4.49805 4.65435 4.68572 4.73648 4.76119 4.81771 4.95406 4.97743 4.99533 5.07751 5.11574 5.16699 5.40588 5.42677 5.58424 5.64342 5.85676 6.09291 6.21016 6.42905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.332 6.332 3 C 0.109 3.891 4 C -0.114 4.114 5 C -0.063 4.063 6 H 0.097 0.903 7 C -0.132 4.132 8 C 0.121 3.879 9 H 0.113 0.887 10 N -1.078 6.078 11 S 2.728 3.272 12 O -0.993 6.993 13 O -0.981 6.981 14 C -0.674 4.674 15 C -0.106 4.106 16 C -0.083 4.083 17 O -0.530 6.530 18 Si 0.745 3.255 19 S 0.197 5.803 20 C -0.208 4.208 21 C -0.095 4.095 22 C -0.140 4.140 23 C -0.084 4.084 24 C -0.162 4.162 25 C -0.095 4.095 26 C -0.219 4.219 27 H 0.113 0.887 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.428 0.572 33 H 0.148 0.852 34 H 0.384 0.616 35 H -0.251 1.251 36 H -0.264 1.264 37 H 0.199 0.801 38 H 0.157 0.843 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.063 5.334 5.774 7.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.064 3.936 4 C -0.115 4.115 5 C -0.082 4.082 6 H 0.115 0.885 7 C -0.171 4.171 8 C 0.013 3.987 9 H 0.131 0.869 10 N -0.841 5.841 11 S 2.817 3.183 12 O -0.983 6.983 13 O -0.972 6.972 14 C -0.777 4.777 15 C -0.228 4.228 16 C -0.193 4.193 17 O -0.341 6.341 18 Si 0.643 3.357 19 S 0.461 5.539 20 C -0.344 4.344 21 C -0.123 4.123 22 C -0.179 4.179 23 C -0.102 4.102 24 C -0.180 4.180 25 C -0.113 4.113 26 C -0.237 4.237 27 H 0.131 0.869 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.268 0.732 33 H 0.166 0.834 34 H 0.237 0.763 35 H -0.176 1.176 36 H -0.189 1.189 37 H 0.216 0.784 38 H 0.175 0.825 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.135 4.356 7.030 8.348 hybrid contribution -1.046 0.873 -1.937 2.368 sum -2.181 5.229 5.093 7.618 Atomic orbital electron populations 1.23249 0.77098 1.05144 1.01891 1.86028 1.22725 1.27040 1.88764 1.19161 0.92524 0.84558 0.97404 1.19280 0.90102 0.96171 1.05917 1.21400 0.93959 0.95211 0.97589 0.88495 1.23421 0.94966 1.02379 0.96312 1.21776 1.00840 0.78577 0.97509 0.86939 1.55231 1.24027 1.16201 1.88683 1.00624 0.72323 0.72296 0.73038 1.93540 1.65983 1.82867 1.55937 1.93544 1.82441 1.33984 1.87186 1.29643 1.09407 1.18823 1.19799 1.25167 1.01036 0.99926 0.96655 1.25234 0.85367 1.02896 1.05814 1.86686 1.61301 1.34345 1.51784 0.94137 0.85390 0.80975 0.75223 1.84079 1.13154 1.49019 1.07689 1.26254 1.05575 1.07404 0.95171 1.19835 0.94251 0.98602 0.99645 1.23743 0.94971 1.02099 0.97085 1.21137 1.01078 0.90597 0.97378 1.21373 0.93997 0.99385 1.03243 1.21249 0.95373 0.97410 0.97272 1.21472 1.00786 0.92578 1.08910 0.86913 0.92081 0.92107 0.87627 0.90935 0.73244 0.83422 0.76287 1.17586 1.18895 0.78433 0.82522 0.90845 0.86882 0.83255 0.84180 0.84409 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.33 -1.24 9.43 -92.41 -0.87 -2.11 16 3 C 0.11 0.41 6.66 22.51 0.15 0.56 16 4 C -0.11 -0.15 5.30 -19.77 -0.10 -0.26 16 5 C -0.06 0.09 3.69 -10.92 -0.04 0.05 16 6 H 0.10 0.02 7.27 -2.39 -0.02 0.00 16 7 C -0.13 0.26 7.34 31.12 0.23 0.49 16 8 C 0.12 -0.30 4.51 45.51 0.21 -0.09 16 9 H 0.11 -0.36 7.74 -2.39 -0.02 -0.37 16 10 N -1.08 -0.56 3.70 -167.21 -0.62 -1.18 16 11 S 2.73 18.72 4.89 -56.49 -0.28 18.44 16 12 O -0.99 -12.25 16.82 -128.00 -2.15 -14.41 16 13 O -0.98 -12.89 16.57 -121.57 -2.01 -14.91 16 14 C -0.67 -1.94 5.79 21.21 0.12 -1.82 16 15 C -0.11 -0.01 5.77 24.59 0.14 0.14 16 16 C -0.08 0.05 2.19 71.24 0.16 0.21 16 17 O -0.53 -0.06 8.08 -134.92 -1.09 -1.15 16 18 Si 0.74 -2.90 31.06 68.60 2.13 -0.77 16 19 S 0.20 -0.80 20.83 -56.49 -1.18 -1.97 16 20 C -0.21 0.64 11.23 66.72 0.75 1.39 16 21 C -0.10 -0.10 9.70 21.22 0.21 0.11 16 22 C -0.14 0.69 7.11 31.21 0.22 0.91 16 23 C -0.08 0.10 8.62 22.25 0.19 0.29 16 24 C -0.16 0.13 10.04 22.28 0.22 0.35 16 25 C -0.10 -0.04 10.04 22.25 0.22 0.19 16 26 C -0.22 -0.43 9.04 22.37 0.20 -0.23 16 27 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 28 H 0.06 -0.23 7.66 -2.39 -0.02 -0.25 16 29 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 30 H 0.11 -0.40 7.73 -2.39 -0.02 -0.41 16 31 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.43 -0.34 7.43 -96.75 -0.72 -1.06 16 33 H 0.15 -0.04 7.96 -2.39 -0.02 -0.06 16 34 H 0.38 -1.78 5.63 -74.06 -0.42 -2.20 16 35 H -0.25 0.48 7.11 99.48 0.71 1.18 16 36 H -0.26 -0.51 7.11 99.48 0.71 0.20 16 37 H 0.20 -1.66 8.06 -2.91 -0.02 -1.69 16 38 H 0.16 0.08 7.74 -2.91 -0.02 0.06 16 39 H 0.07 -0.45 5.95 -2.39 -0.01 -0.46 16 40 H 0.11 -0.84 6.30 -2.39 -0.02 -0.86 16 41 H 0.15 -0.90 6.64 -2.91 -0.02 -0.92 16 42 H 0.14 -0.65 8.06 -2.91 -0.02 -0.67 16 43 H 0.14 -0.46 8.06 -2.91 -0.02 -0.49 16 44 H 0.14 -0.15 6.30 -2.91 -0.02 -0.17 16 Total: 0.00 -21.63 374.93 -2.11 -23.75 By element: Atomic # 1 Polarization: -9.01 SS G_CDS: -0.03 Total: -9.04 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 3.99 Total: 3.34 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -0.62 Total: -1.18 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -6.13 Total: -32.57 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.13 Total: -0.77 kcal Atomic # 16 Polarization: 17.92 SS G_CDS: -1.45 Total: 16.47 kcal Total: -21.63 -2.11 -23.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15784318_14772022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.258 kcal (2) G-P(sol) polarization free energy of solvation -21.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds