Wall clock time and date at job start Mon Mar 8 2021 10:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47150 * 2 1 4 4 H 1.48501 * 109.47288 * 59.99842 * 3 2 1 5 5 H 1.48503 * 109.47118 * 179.97438 * 3 2 1 6 6 H 1.48502 * 109.47462 * 300.00058 * 3 2 1 7 7 C 1.50695 * 109.46674 * 119.99819 * 2 1 3 8 8 C 1.38132 * 120.01802 * 255.19732 * 7 2 1 9 9 C 1.38319 * 120.06269 * 179.97438 * 8 7 2 10 10 I 2.09498 * 119.95681 * 180.02562 * 9 8 7 11 11 C 1.38386 * 120.08567 * 359.97438 * 9 8 7 12 12 Br 1.89100 * 119.98300 * 180.02562 * 11 9 8 13 13 C 1.38248 * 120.03101 * 0.02562 * 11 9 8 14 14 C 1.38692 * 119.94524 * 359.75460 * 13 11 9 15 15 O 1.35905 * 120.04879 * 180.02562 * 14 13 11 16 16 S 1.52199 * 113.99848 * 275.50076 * 15 14 13 17 17 O 1.42096 * 106.40319 * 188.56954 * 16 15 14 18 18 O 1.42102 * 106.40253 * 321.48851 * 16 15 14 19 19 C 1.76201 * 107.21848 * 75.02702 * 16 15 14 20 20 C 1.38240 * 120.00104 * 262.95443 * 19 16 15 21 21 C 1.38232 * 119.99865 * 180.02562 * 20 19 16 22 22 C 1.38233 * 120.00188 * 359.97438 * 21 20 19 23 Xx 1.81000 * 120.00099 * 179.97438 * 22 21 20 24 23 F 9.79126 * 133.42461 * 252.08138 * 7 1 2 25 24 F 1.60995 * 89.99963 * 135.00046 * 23 22 21 26 25 F 1.61003 * 89.99992 * 315.00241 * 23 22 21 27 26 F 1.60992 * 90.00217 * 225.00000 * 23 22 21 28 27 F 1.61008 * 89.99950 * 44.99936 * 23 22 21 29 28 C 1.38229 * 120.00120 * 359.95805 * 22 21 20 30 29 C 1.38234 * 119.99979 * 82.68758 * 19 16 15 31 30 H 0.96701 * 114.00234 * 174.25753 * 1 2 3 32 31 H 1.08993 * 109.46952 * 240.00126 * 2 1 3 33 32 H 1.08002 * 119.96473 * 359.96192 * 8 7 2 34 33 H 1.08007 * 120.02566 * 179.97438 * 13 11 9 35 34 H 1.08005 * 119.99910 * 359.97438 * 20 19 16 36 35 H 1.08008 * 119.99834 * 179.97438 * 21 20 19 37 36 H 1.08005 * 120.00272 * 180.02562 * 29 22 21 38 37 H 1.07998 * 119.99910 * 0.19841 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5550 2.4565 1.2125 5 1 3.5350 1.7564 0.0006 6 1 1.5550 2.4565 -1.2125 7 6 1.9312 -0.7104 1.2305 8 6 2.4496 0.0162 2.2847 9 6 2.9104 -0.6348 3.4148 10 53 3.6952 0.4705 5.0120 11 6 2.8526 -2.0153 3.4921 12 35 3.4826 -2.9023 5.0388 13 6 2.3345 -2.7462 2.4392 14 6 1.8679 -2.0944 1.3073 15 8 1.3577 -2.8108 0.2713 16 16 2.4088 -3.3300 -0.6994 17 8 1.7006 -3.8696 -1.8068 18 8 3.3815 -2.3017 -0.8252 19 6 3.2169 -4.6861 0.0832 20 6 4.4182 -4.4902 0.7386 21 6 5.0524 -5.5543 1.3520 22 6 4.4851 -6.8142 1.3107 23 9 6.0561 -9.4455 2.8280 24 9 3.9130 -8.6785 2.7478 25 9 6.7187 -7.7367 1.4790 26 9 5.0363 -9.1209 0.8174 27 9 5.5954 -7.2943 3.4095 28 6 3.2831 -7.0099 0.6566 29 6 2.6468 -5.9449 0.0466 30 1 -0.3934 -0.8790 -0.0884 31 1 1.7923 -0.5138 -0.8899 32 1 2.4954 1.0937 2.2263 33 1 2.2898 -3.8236 2.4995 34 1 4.8616 -3.5059 0.7705 35 1 5.9912 -5.4013 1.8637 36 1 2.8396 -7.9941 0.6246 37 1 1.7078 -6.0978 -0.4644 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15786362_8643202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:48 Heat of formation + Delta-G solvation = 418.042421 kcal Electronic energy + Delta-G solvation = -39923.778534 eV Core-core repulsion = 33454.717987 eV Total energy + Delta-G solvation = -6469.060547 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 591.848 amu Computer time = 10.50 seconds Orbital eigenvalues (eV) -43.24486 -41.35910 -40.92269 -40.59261 -40.50500 -40.44967 -39.98957 -39.90437 -38.93957 -38.10103 -37.63726 -34.59907 -33.89273 -32.78334 -32.48581 -31.73156 -29.56891 -27.29863 -25.36579 -24.35842 -24.20580 -23.77164 -22.17754 -20.37119 -19.79885 -19.29479 -18.76752 -18.26876 -17.49376 -17.28071 -16.78211 -16.55473 -16.26187 -16.12639 -16.05258 -15.83962 -15.49345 -15.13936 -15.03139 -14.83091 -14.69375 -14.28645 -13.82532 -13.71807 -13.63070 -13.35012 -13.05923 -12.89275 -12.61762 -12.26319 -12.19538 -12.09440 -12.00919 -11.89734 -11.86002 -11.59326 -11.53366 -11.38304 -11.16879 -10.95051 -10.85657 -10.75976 -10.75002 -10.52475 -10.46122 -10.42747 -10.37093 -9.82779 -9.77228 -9.66495 -9.41108 -9.26358 -8.39453 -5.86764 -2.90782 -1.72622 -1.21011 -1.09273 -0.90105 -0.77126 -0.66687 -0.38148 -0.04289 0.09059 0.41778 0.62274 0.70870 1.21197 1.66139 1.69135 1.89714 2.21865 2.43265 2.53932 2.82658 2.91211 3.10321 3.16851 3.23537 3.37417 3.39498 3.47923 3.54630 3.70905 3.84431 4.03981 4.10018 4.11392 4.24113 4.35442 4.41770 4.62837 5.10758 5.28032 6.06364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.509 6.509 2 C -0.338 4.338 3 Si 1.482 2.518 4 H 0.416 0.584 5 H -0.161 1.161 6 H 0.681 0.319 7 C -0.056 4.056 8 C -0.040 4.040 9 C -0.062 4.062 10 I 0.030 6.970 11 C -0.060 4.060 12 Br -0.036 7.036 13 C -0.110 4.110 14 C 0.093 3.907 15 O -0.638 6.638 16 S 2.738 3.262 17 O -0.919 6.919 18 O -0.912 6.912 19 C -0.750 4.750 20 C 0.041 3.959 21 C -0.176 4.176 22 C 0.482 3.518 23 F -0.338 7.338 24 F -0.612 7.612 25 F -0.541 7.541 26 F -0.626 7.626 27 F -0.522 7.522 28 C -0.188 4.188 29 C 0.036 3.964 30 H 0.401 0.599 31 H 0.139 0.861 32 H 0.235 0.765 33 H 0.124 0.876 34 H 0.231 0.769 35 H 0.134 0.866 36 H 0.121 0.879 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.034 113.710 -24.818 122.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.318 6.318 2 C -0.426 4.426 3 Si 1.394 2.606 4 H 0.447 0.553 5 H -0.086 1.086 6 H 0.691 0.309 7 C -0.062 4.062 8 C -0.059 4.059 9 C -0.205 4.205 10 I 0.180 6.820 11 C -0.144 4.144 12 Br 0.051 6.949 13 C -0.134 4.134 14 C 0.049 3.951 15 O -0.596 6.596 16 S 2.822 3.178 17 O -0.917 6.917 18 O -0.911 6.911 19 C -0.826 4.826 20 C 0.023 3.977 21 C -0.195 4.195 22 C 0.472 3.528 23 F -0.338 7.338 24 F -0.609 7.609 25 F -0.538 7.538 26 F -0.622 7.622 27 F -0.519 7.519 28 C -0.207 4.207 29 C 0.018 3.982 30 H 0.254 0.746 31 H 0.155 0.845 32 H 0.249 0.751 33 H 0.142 0.858 34 H 0.247 0.753 35 H 0.152 0.848 36 H 0.139 0.861 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -37.025 115.306 -23.395 123.344 hybrid contribution 1.224 -9.121 1.346 9.301 sum -35.801 106.185 -22.049 114.206 Atomic orbital electron populations 1.86385 1.12512 1.37133 1.95781 1.30645 0.89788 1.29968 0.92169 1.02495 0.80214 0.62067 0.15830 0.55321 1.08629 0.30877 1.21208 0.97165 0.89717 0.98097 1.20386 0.99042 0.97285 0.89190 1.25296 1.01230 0.92545 1.01407 1.97530 1.83811 1.59989 1.40686 1.21864 1.02451 0.95375 0.94687 1.97304 1.85808 1.79060 1.32687 1.21853 0.95691 1.02762 0.93108 1.18053 1.00319 0.91870 0.84835 1.85890 1.56565 1.71740 1.45455 1.01473 0.72034 0.72200 0.72100 1.93721 1.71930 1.79293 1.46771 1.93529 1.60702 1.52355 1.84514 1.32009 1.10820 1.17947 1.21817 1.21298 0.90848 0.97360 0.88178 1.21755 1.04280 0.88451 1.05016 1.25635 0.82958 0.63795 0.80438 1.99993 1.78340 1.56775 1.98692 1.99886 1.72930 1.91289 1.96789 1.99874 1.79442 1.76103 1.98429 1.99888 1.87291 1.85367 1.89649 1.99870 1.95123 1.66980 1.89973 1.21884 0.94437 1.03610 1.00758 1.21228 0.99021 0.87322 0.90627 0.74637 0.84462 0.75083 0.85779 0.75290 0.84808 0.86135 0.77230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 159. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 35.69 12.63 -148.98 -1.88 33.81 16 2 C -0.34 25.31 2.28 71.23 0.16 25.48 16 3 Si 1.48 -173.75 25.75 68.60 1.77 -171.98 16 4 H 0.42 -56.60 6.73 99.48 0.67 -55.94 16 5 H -0.16 17.53 7.11 99.48 0.71 18.23 16 6 H 0.68 -103.21 7.11 99.48 0.71 -102.50 16 7 C -0.06 2.93 4.86 -19.77 -0.10 2.83 16 8 C -0.04 2.21 8.37 22.26 0.19 2.39 16 9 C -0.06 1.95 6.20 22.32 0.14 2.08 16 10 I 0.03 -0.78 38.57 -18.82 -0.73 -1.51 16 11 C -0.06 0.84 6.22 22.31 0.14 0.97 16 12 Br -0.04 -0.18 31.95 -20.37 -0.65 -0.83 16 13 C -0.11 1.38 8.21 22.38 0.18 1.56 16 14 C 0.09 -2.62 4.71 22.50 0.11 -2.52 16 15 O -0.64 15.24 9.14 -61.76 -0.56 14.67 16 16 S 2.74 -37.73 5.16 -56.49 -0.29 -38.02 16 17 O -0.92 6.08 17.48 -118.78 -2.08 4.00 16 18 O -0.91 22.10 14.42 -118.78 -1.71 20.39 16 19 C -0.75 -7.05 4.73 22.27 0.11 -6.95 16 20 C 0.04 0.64 8.57 22.27 0.19 0.83 16 21 C -0.18 -7.77 8.62 22.27 0.19 -7.58 16 22 C 0.48 31.23 4.82 22.27 0.11 31.34 16 23 F -0.34 -38.13 16.66 44.97 0.75 -37.38 16 24 F -0.61 -62.61 15.31 44.97 0.69 -61.92 16 25 F -0.54 -53.68 15.31 44.97 0.69 -52.99 16 26 F -0.63 -65.23 15.32 44.97 0.69 -64.54 16 27 F -0.52 -50.47 15.31 44.97 0.69 -49.78 16 28 C -0.19 -9.39 8.62 22.27 0.19 -9.19 16 29 C 0.04 0.81 9.52 22.27 0.21 1.02 16 30 H 0.40 -22.94 8.74 -74.06 -0.65 -23.59 16 31 H 0.14 -9.80 6.28 -2.39 -0.02 -9.81 16 32 H 0.23 -19.29 4.89 -2.91 -0.01 -19.31 16 33 H 0.12 0.03 7.39 -2.91 -0.02 0.01 16 34 H 0.23 -0.48 7.48 -2.91 -0.02 -0.50 16 35 H 0.13 6.80 7.40 -2.91 -0.02 6.78 16 36 H 0.12 7.26 7.40 -2.91 -0.02 7.24 16 37 H 0.21 2.08 7.79 -2.91 -0.02 2.06 16 Total: 0.00 -541.60 397.06 0.48 -541.12 By element: Atomic # 1 Polarization: -178.62 SS G_CDS: 1.30 Total: -177.32 kcal Atomic # 6 Polarization: 40.46 SS G_CDS: 1.82 Total: 42.28 kcal Atomic # 8 Polarization: 79.11 SS G_CDS: -6.24 Total: 72.87 kcal Atomic # 9 Polarization: -270.12 SS G_CDS: 3.50 Total: -266.62 kcal Atomic # 14 Polarization: -173.75 SS G_CDS: 1.77 Total: -171.98 kcal Atomic # 16 Polarization: -37.73 SS G_CDS: -0.29 Total: -38.02 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.65 Total: -0.83 kcal Atomic # 53 Polarization: -0.78 SS G_CDS: -0.73 Total: -1.51 kcal Total: -541.60 0.48 -541.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15786362_8643202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 959.165 kcal (2) G-P(sol) polarization free energy of solvation -541.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 417.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -541.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 418.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.50 seconds