Wall clock time and date at job start Mon Mar 8 2021 10:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34749 * 117.00591 * 2 1 4 4 O 1.21511 * 119.99770 * 359.97438 * 3 2 1 5 5 C 1.47400 * 120.00271 * 179.97438 * 3 2 1 6 6 C 1.39727 * 120.19448 * 359.72649 * 5 3 2 7 7 C 1.37810 * 119.89721 * 180.24816 * 6 5 3 8 8 C 1.38519 * 120.30950 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.79460 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.47089 * 120.02271 * 9 8 7 11 11 Si 1.86304 * 109.47476 * 0.02562 * 9 8 7 12 12 H 1.48495 * 109.46781 * 59.99926 * 11 9 8 13 13 H 1.48499 * 109.46846 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46801 * 300.00075 * 11 9 8 15 15 C 1.38094 * 120.40433 * 359.97438 * 8 7 6 16 16 C 1.38663 * 120.08811 * 359.97438 * 15 8 7 17 17 O 1.35642 * 120.15558 * 180.02562 * 16 15 8 18 18 S 1.52192 * 114.00186 * 270.02682 * 17 16 15 19 19 O 1.42099 * 104.27897 * 191.06933 * 18 17 16 20 20 O 1.42110 * 104.27542 * 318.92286 * 18 17 16 21 21 C 1.81395 * 104.45288 * 74.99643 * 18 17 16 22 22 C 1.52999 * 109.47491 * 180.02562 * 21 18 17 23 23 C 1.52994 * 109.47596 * 179.97438 * 22 21 18 24 24 Si 1.86300 * 109.47410 * 179.97438 * 23 22 21 25 25 C 1.86300 * 109.47150 * 60.00224 * 24 23 22 26 26 C 1.86302 * 109.47194 * 180.02562 * 24 23 22 27 27 C 1.86307 * 109.46802 * 300.00121 * 24 23 22 28 28 H 1.09005 * 109.46527 * 60.00012 * 1 2 3 29 29 H 1.09002 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47111 * 300.00576 * 1 2 3 31 31 H 1.07993 * 120.05074 * 0.24929 * 6 5 3 32 32 H 1.08001 * 119.84261 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47047 * 240.01987 * 9 8 7 34 34 H 0.96699 * 113.99808 * 299.99839 * 10 9 8 35 35 H 1.08000 * 119.95594 * 180.02562 * 15 8 7 36 36 H 1.09007 * 109.47242 * 300.00025 * 21 18 17 37 37 H 1.08999 * 109.47320 * 60.00115 * 21 18 17 38 38 H 1.09007 * 109.47122 * 300.00149 * 22 21 18 39 39 H 1.09005 * 109.47436 * 59.99710 * 22 21 18 40 40 H 1.08997 * 109.47086 * 300.00283 * 23 22 21 41 41 H 1.09005 * 109.46734 * 59.99563 * 23 22 21 42 42 H 1.08997 * 109.47005 * 59.99836 * 25 24 23 43 43 H 1.08996 * 109.46955 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.46650 * 299.99634 * 25 24 23 45 45 H 1.09005 * 109.47193 * 59.99504 * 26 24 23 46 46 H 1.08996 * 109.47101 * 179.97438 * 26 24 23 47 47 H 1.08997 * 109.46843 * 300.00092 * 26 24 23 48 48 H 1.08991 * 109.47358 * 60.00359 * 27 24 23 49 49 H 1.09002 * 109.46427 * 180.02562 * 27 24 23 50 50 H 1.08999 * 109.47188 * 299.99766 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2006 0.0000 4 8 1.4021 2.2197 -0.0005 5 6 3.5359 1.2776 0.0006 6 6 4.3008 0.1083 0.0069 7 6 5.6766 0.1875 0.0126 8 6 6.3058 1.4216 0.0126 9 6 7.8110 1.4947 0.0194 10 8 8.2595 2.1884 -1.1467 11 14 8.5165 -0.2296 0.0259 12 1 8.0617 -0.9550 -1.1873 13 1 9.9998 -0.1574 0.0333 14 1 8.0505 -0.9504 1.2376 15 6 5.5622 2.5852 0.0064 16 6 4.1769 2.5249 -0.0005 17 8 3.4451 3.6670 -0.0071 18 16 3.1047 4.1921 1.3802 19 8 2.1402 5.2084 1.1433 20 8 2.7740 3.0275 2.1244 21 6 4.6553 4.9144 1.9840 22 6 4.4404 5.4830 3.3881 23 6 5.7484 6.0916 3.8976 24 14 5.4866 6.7845 5.6070 25 6 4.9485 5.4193 6.7548 26 6 7.0791 7.5263 6.2270 27 6 4.1701 8.1015 5.5482 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.8146 -0.8560 0.0073 32 1 6.2670 -0.7168 0.0178 33 1 8.1448 2.0273 0.9098 34 1 7.9979 1.7698 -1.9782 35 1 6.0602 3.5435 0.0060 36 1 5.4258 4.1442 2.0182 37 1 4.9697 5.7133 1.3124 38 1 3.6698 6.2531 3.3543 39 1 4.1262 4.6838 4.0595 40 1 6.5187 5.3212 3.9314 41 1 6.0630 6.8906 3.2262 42 1 5.7186 4.6488 6.7890 43 1 4.7949 5.8248 7.7547 44 1 4.0166 4.9858 6.3918 45 1 7.3936 8.3252 5.5553 46 1 6.9258 7.9321 7.2269 47 1 7.8495 6.7561 6.2612 48 1 3.2383 7.6680 5.1853 49 1 4.0173 8.5072 6.5483 50 1 4.4850 8.9003 4.8767 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16464680_14927650.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:50 Heat of formation + Delta-G solvation = -234.768263 kcal Electronic energy + Delta-G solvation = -33788.287766 eV Core-core repulsion = 29225.557687 eV Total energy + Delta-G solvation = -4562.730079 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 390.126 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.72163 -40.97008 -40.02182 -38.15259 -37.71826 -37.39552 -36.99892 -35.99690 -33.41294 -32.03307 -29.75652 -29.13354 -28.55249 -28.44705 -28.38795 -27.44312 -25.07732 -24.12721 -22.97811 -22.69597 -21.14172 -19.51760 -19.31959 -18.89663 -18.59069 -18.10232 -17.98508 -17.30780 -16.95412 -16.66693 -16.56667 -16.23170 -16.01813 -15.52985 -15.45828 -14.92028 -14.69371 -14.57983 -14.46920 -14.28529 -14.19358 -14.11107 -13.98651 -13.72950 -13.68166 -13.60368 -13.33258 -13.29455 -13.25042 -13.19388 -13.12672 -13.09486 -13.06702 -13.00554 -12.95876 -12.55360 -12.34871 -12.01825 -11.92932 -11.85602 -11.77023 -11.60804 -10.87178 -10.85837 -10.83701 -10.61339 -10.47055 -10.32268 -1.23150 -0.69301 -0.24812 0.81700 1.03125 1.21717 1.26634 1.31432 1.52380 1.68810 1.70680 1.81100 1.82209 2.16790 2.54678 2.68641 2.94166 3.01368 3.17179 3.22920 3.35743 3.47936 3.55369 3.63299 3.71930 3.79769 3.98138 4.13466 4.20662 4.21933 4.31085 4.33243 4.46923 4.49141 4.53862 4.61679 4.66366 4.67908 4.68835 4.70505 4.72645 4.73097 4.74838 4.76388 4.82439 4.88029 5.21854 5.23332 5.29945 5.43510 5.51607 5.54227 6.24174 6.63902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.351 6.351 3 C 0.514 3.486 4 O -0.490 6.490 5 C -0.097 4.097 6 C -0.036 4.036 7 C -0.123 4.123 8 C -0.068 4.068 9 C -0.090 4.090 10 O -0.533 6.533 11 Si 0.948 3.052 12 H -0.245 1.245 13 H -0.247 1.247 14 H -0.244 1.244 15 C -0.117 4.117 16 C 0.133 3.867 17 O -0.650 6.650 18 S 2.591 3.409 19 O -0.913 6.913 20 O -0.945 6.945 21 C -0.655 4.655 22 C -0.101 4.101 23 C -0.406 4.406 24 Si 1.001 2.999 25 C -0.453 4.453 26 C -0.448 4.448 27 C -0.454 4.454 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.161 0.839 32 H 0.143 0.857 33 H 0.129 0.871 34 H 0.381 0.619 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.848 -4.376 0.522 7.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.358 3.642 4 O -0.378 6.378 5 C -0.101 4.101 6 C -0.054 4.054 7 C -0.141 4.141 8 C -0.069 4.069 9 C -0.200 4.200 10 O -0.338 6.338 11 Si 0.769 3.231 12 H -0.168 1.168 13 H -0.171 1.171 14 H -0.167 1.167 15 C -0.137 4.137 16 C 0.091 3.909 17 O -0.608 6.608 18 S 2.687 3.313 19 O -0.912 6.912 20 O -0.944 6.944 21 C -0.782 4.782 22 C -0.139 4.139 23 C -0.491 4.491 24 Si 1.198 2.802 25 C -0.560 4.560 26 C -0.556 4.556 27 C -0.562 4.562 28 H 0.086 0.914 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.229 0.771 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.429 -4.600 0.731 7.153 hybrid contribution -0.188 0.609 -0.364 0.734 sum 5.240 -3.991 0.367 6.597 Atomic orbital electron populations 1.23406 0.74857 1.04267 1.03252 1.86483 1.24428 1.31600 1.84215 1.20604 0.88256 0.82150 0.73182 1.90857 1.66470 1.36009 1.44443 1.19322 0.90797 0.93213 1.06728 1.21459 0.93178 0.97998 0.92744 1.21290 0.94953 0.97659 1.00197 1.20526 0.97238 0.92320 0.96836 1.25192 0.90550 1.11353 0.92870 1.86558 1.78094 1.53879 1.15275 0.85682 0.81324 0.73759 0.82371 1.16843 1.17063 1.16737 1.21196 0.90088 1.01089 1.01357 1.17973 0.89068 0.81273 1.02601 1.85733 1.73122 1.43963 1.57951 1.05726 0.77018 0.75471 0.73122 1.93645 1.55576 1.59995 1.81946 1.93627 1.82345 1.46552 1.71849 1.31056 1.23689 1.13981 1.09488 1.20971 1.00190 1.01340 0.91432 1.26171 0.98812 1.06145 1.18005 0.79339 0.67405 0.67267 0.66185 1.26170 1.05918 1.13183 1.10775 1.26096 1.16174 1.07003 1.06333 1.26181 1.12652 1.12673 1.04649 0.91431 0.87419 0.91239 0.82185 0.83954 0.85341 0.77134 0.82447 0.84687 0.84086 0.89905 0.89906 0.89995 0.89929 0.91157 0.91091 0.91117 0.91227 0.91141 0.91248 0.91094 0.91095 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.01 10.57 101.05 1.07 1.08 16 2 O -0.35 -0.89 9.81 -40.62 -0.40 -1.29 16 3 C 0.51 2.53 7.17 34.46 0.25 2.77 16 4 O -0.49 -3.93 13.32 -29.41 -0.39 -4.32 16 5 C -0.10 -0.25 5.31 -104.86 -0.56 -0.80 16 6 C -0.04 0.04 9.61 -39.18 -0.38 -0.34 16 7 C -0.12 0.32 8.64 -39.63 -0.34 -0.02 16 8 C -0.07 0.17 5.40 -104.57 -0.56 -0.40 16 9 C -0.09 0.34 2.81 36.01 0.10 0.44 16 10 O -0.53 1.53 12.76 -35.23 -0.45 1.08 16 11 Si 0.95 -3.51 25.05 -169.99 -4.26 -7.77 16 12 H -0.25 0.91 7.11 56.52 0.40 1.31 16 13 H -0.25 0.46 7.11 56.52 0.40 0.86 16 14 H -0.24 0.83 7.11 56.52 0.40 1.23 16 15 C -0.12 0.12 8.00 -39.48 -0.32 -0.19 16 16 C 0.13 0.30 4.81 -38.67 -0.19 0.12 16 17 O -0.65 -2.74 8.57 -54.06 -0.46 -3.20 16 18 S 2.59 10.96 4.41 -107.50 -0.47 10.49 16 19 O -0.91 -7.23 18.09 -67.04 -1.21 -8.44 16 20 O -0.95 -5.57 14.70 -69.91 -1.03 -6.59 16 21 C -0.66 0.49 5.46 37.16 0.20 0.69 16 22 C -0.10 0.08 4.59 -26.73 -0.12 -0.05 16 23 C -0.41 0.95 4.45 37.15 0.17 1.11 16 24 Si 1.00 -2.75 12.19 -169.99 -2.07 -4.82 16 25 C -0.45 0.67 8.65 101.05 0.87 1.54 16 26 C -0.45 0.81 8.65 101.05 0.87 1.68 16 27 C -0.45 0.53 8.65 101.05 0.87 1.40 16 28 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 29 H 0.11 -0.29 8.14 -51.93 -0.42 -0.71 16 30 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.16 -0.52 7.61 -52.49 -0.40 -0.92 16 32 H 0.14 -0.69 4.85 -52.49 -0.25 -0.94 16 33 H 0.13 -0.66 7.96 -51.93 -0.41 -1.07 16 34 H 0.38 -2.27 8.70 45.56 0.40 -1.87 16 35 H 0.16 -0.51 7.49 -52.49 -0.39 -0.91 16 36 H 0.13 -0.43 6.60 -51.92 -0.34 -0.77 16 37 H 0.14 -0.38 8.14 -51.92 -0.42 -0.80 16 38 H 0.08 -0.09 7.79 -51.93 -0.40 -0.50 16 39 H 0.08 -0.13 7.79 -51.93 -0.40 -0.54 16 40 H 0.08 -0.26 7.96 -51.93 -0.41 -0.68 16 41 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 42 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 43 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 44 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 45 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 46 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 47 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 48 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 49 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 50 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 LS Contribution 421.62 15.07 6.35 6.35 Total: 0.00 -12.06 421.62 -9.69 -21.74 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: -7.23 Total: -12.28 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 1.94 Total: 9.05 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -3.94 Total: -22.76 kcal Atomic # 14 Polarization: -6.26 SS G_CDS: -6.33 Total: -12.59 kcal Atomic # 16 Polarization: 10.96 SS G_CDS: -0.47 Total: 10.49 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -12.06 -9.69 -21.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16464680_14927650.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.027 kcal (2) G-P(sol) polarization free energy of solvation -12.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds