Wall clock time and date at job start Mon Mar 8 2021 10:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34749 * 117.00591 * 2 1 4 4 O 1.21511 * 119.99770 * 359.97438 * 3 2 1 5 5 C 1.47400 * 120.00271 * 179.97438 * 3 2 1 6 6 C 1.39727 * 120.19448 * 359.72649 * 5 3 2 7 7 C 1.37810 * 119.89721 * 180.24816 * 6 5 3 8 8 C 1.38519 * 120.30950 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.79460 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.47089 * 120.02271 * 9 8 7 11 11 Si 1.86304 * 109.47476 * 0.02562 * 9 8 7 12 12 H 1.48495 * 109.46781 * 59.99926 * 11 9 8 13 13 H 1.48499 * 109.46846 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46801 * 300.00075 * 11 9 8 15 15 C 1.38094 * 120.40433 * 359.97438 * 8 7 6 16 16 C 1.38663 * 120.08811 * 359.97438 * 15 8 7 17 17 O 1.35642 * 120.15558 * 180.02562 * 16 15 8 18 18 S 1.52192 * 114.00186 * 270.02682 * 17 16 15 19 19 O 1.42099 * 104.27897 * 191.06933 * 18 17 16 20 20 O 1.42110 * 104.27542 * 318.92286 * 18 17 16 21 21 C 1.81395 * 104.45288 * 74.99643 * 18 17 16 22 22 C 1.52999 * 109.47491 * 180.02562 * 21 18 17 23 23 C 1.52994 * 109.47596 * 179.97438 * 22 21 18 24 24 Si 1.86300 * 109.47410 * 179.97438 * 23 22 21 25 25 C 1.86300 * 109.47150 * 60.00224 * 24 23 22 26 26 C 1.86302 * 109.47194 * 180.02562 * 24 23 22 27 27 C 1.86307 * 109.46802 * 300.00121 * 24 23 22 28 28 H 1.09005 * 109.46527 * 60.00012 * 1 2 3 29 29 H 1.09002 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47111 * 300.00576 * 1 2 3 31 31 H 1.07993 * 120.05074 * 0.24929 * 6 5 3 32 32 H 1.08001 * 119.84261 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47047 * 240.01987 * 9 8 7 34 34 H 0.96699 * 113.99808 * 299.99839 * 10 9 8 35 35 H 1.08000 * 119.95594 * 180.02562 * 15 8 7 36 36 H 1.09007 * 109.47242 * 300.00025 * 21 18 17 37 37 H 1.08999 * 109.47320 * 60.00115 * 21 18 17 38 38 H 1.09007 * 109.47122 * 300.00149 * 22 21 18 39 39 H 1.09005 * 109.47436 * 59.99710 * 22 21 18 40 40 H 1.08997 * 109.47086 * 300.00283 * 23 22 21 41 41 H 1.09005 * 109.46734 * 59.99563 * 23 22 21 42 42 H 1.08997 * 109.47005 * 59.99836 * 25 24 23 43 43 H 1.08996 * 109.46955 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.46650 * 299.99634 * 25 24 23 45 45 H 1.09005 * 109.47193 * 59.99504 * 26 24 23 46 46 H 1.08996 * 109.47101 * 179.97438 * 26 24 23 47 47 H 1.08997 * 109.46843 * 300.00092 * 26 24 23 48 48 H 1.08991 * 109.47358 * 60.00359 * 27 24 23 49 49 H 1.09002 * 109.46427 * 180.02562 * 27 24 23 50 50 H 1.08999 * 109.47188 * 299.99766 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2006 0.0000 4 8 1.4021 2.2197 -0.0005 5 6 3.5359 1.2776 0.0006 6 6 4.3008 0.1083 0.0069 7 6 5.6766 0.1875 0.0126 8 6 6.3058 1.4216 0.0126 9 6 7.8110 1.4947 0.0194 10 8 8.2595 2.1884 -1.1467 11 14 8.5165 -0.2296 0.0259 12 1 8.0617 -0.9550 -1.1873 13 1 9.9998 -0.1574 0.0333 14 1 8.0505 -0.9504 1.2376 15 6 5.5622 2.5852 0.0064 16 6 4.1769 2.5249 -0.0005 17 8 3.4451 3.6670 -0.0071 18 16 3.1047 4.1921 1.3802 19 8 2.1402 5.2084 1.1433 20 8 2.7740 3.0275 2.1244 21 6 4.6553 4.9144 1.9840 22 6 4.4404 5.4830 3.3881 23 6 5.7484 6.0916 3.8976 24 14 5.4866 6.7845 5.6070 25 6 4.9485 5.4193 6.7548 26 6 7.0791 7.5263 6.2270 27 6 4.1701 8.1015 5.5482 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.8146 -0.8560 0.0073 32 1 6.2670 -0.7168 0.0178 33 1 8.1448 2.0273 0.9098 34 1 7.9979 1.7698 -1.9782 35 1 6.0602 3.5435 0.0060 36 1 5.4258 4.1442 2.0182 37 1 4.9697 5.7133 1.3124 38 1 3.6698 6.2531 3.3543 39 1 4.1262 4.6838 4.0595 40 1 6.5187 5.3212 3.9314 41 1 6.0630 6.8906 3.2262 42 1 5.7186 4.6488 6.7890 43 1 4.7949 5.8248 7.7547 44 1 4.0166 4.9858 6.3918 45 1 7.3936 8.3252 5.5553 46 1 6.9258 7.9321 7.2269 47 1 7.8495 6.7561 6.2612 48 1 3.2383 7.6680 5.1853 49 1 4.0173 8.5072 6.5483 50 1 4.4850 8.9003 4.8767 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16464680_14927650.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:49 Heat of formation + Delta-G solvation = -235.144819 kcal Electronic energy + Delta-G solvation = -33788.304095 eV Core-core repulsion = 29225.557687 eV Total energy + Delta-G solvation = -4562.746408 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 390.126 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.80316 -41.20072 -39.94174 -38.47148 -37.70068 -37.48016 -37.31114 -35.90838 -33.33437 -31.95512 -29.61940 -29.16614 -28.41792 -28.31413 -28.25190 -27.33642 -25.07000 -24.03182 -22.91067 -22.78210 -21.19615 -19.63206 -19.44066 -18.90227 -18.72778 -18.23897 -17.99421 -17.54676 -16.94692 -16.66341 -16.29099 -16.07503 -15.97365 -15.56484 -15.24651 -14.82751 -14.70783 -14.64372 -14.49616 -14.21216 -14.15032 -14.03022 -13.97658 -13.62417 -13.58098 -13.56886 -13.42442 -13.39797 -13.31386 -13.21411 -13.14463 -13.06147 -13.03459 -12.97670 -12.91776 -12.34049 -12.04758 -11.98346 -11.86693 -11.84442 -11.83424 -11.66648 -10.70944 -10.68650 -10.62928 -10.47248 -10.32882 -10.23219 -1.33973 -0.71046 -0.18805 0.85209 1.13177 1.21046 1.41238 1.56148 1.60468 1.90895 2.00276 2.02340 2.02919 2.18349 2.50407 2.73610 2.80464 3.17167 3.26463 3.44315 3.49261 3.57815 3.64464 3.76133 3.80566 3.89936 4.13958 4.18931 4.22134 4.32350 4.41654 4.53129 4.56999 4.62994 4.66698 4.70203 4.75496 4.79894 4.80629 4.83279 4.86042 4.87678 4.88621 4.89453 4.94752 5.08241 5.08674 5.36217 5.45497 5.60128 5.66049 5.68001 6.38906 6.70512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.506 3.494 4 O -0.535 6.535 5 C -0.131 4.131 6 C -0.029 4.029 7 C -0.114 4.114 8 C -0.056 4.056 9 C -0.085 4.085 10 O -0.546 6.546 11 Si 0.972 3.028 12 H -0.243 1.243 13 H -0.275 1.275 14 H -0.244 1.244 15 C -0.112 4.112 16 C 0.106 3.894 17 O -0.664 6.664 18 S 2.574 3.426 19 O -0.972 6.972 20 O -0.976 6.976 21 C -0.625 4.625 22 C -0.120 4.120 23 C -0.408 4.408 24 Si 1.068 2.932 25 C -0.473 4.473 26 C -0.460 4.460 27 C -0.478 4.478 28 H 0.063 0.937 29 H 0.144 0.856 30 H 0.057 0.943 31 H 0.179 0.821 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.393 0.607 35 H 0.182 0.818 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.058 -5.402 0.485 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.352 3.648 4 O -0.427 6.427 5 C -0.134 4.134 6 C -0.047 4.047 7 C -0.132 4.132 8 C -0.057 4.057 9 C -0.195 4.195 10 O -0.353 6.353 11 Si 0.795 3.205 12 H -0.166 1.166 13 H -0.200 1.200 14 H -0.167 1.167 15 C -0.132 4.132 16 C 0.063 3.937 17 O -0.622 6.622 18 S 2.675 3.325 19 O -0.970 6.970 20 O -0.974 6.974 21 C -0.756 4.756 22 C -0.159 4.159 23 C -0.494 4.494 24 Si 1.260 2.740 25 C -0.578 4.578 26 C -0.567 4.567 27 C -0.583 4.583 28 H 0.082 0.918 29 H 0.162 0.838 30 H 0.076 0.924 31 H 0.196 0.804 32 H 0.186 0.814 33 H 0.166 0.834 34 H 0.243 0.757 35 H 0.199 0.801 36 H 0.186 0.814 37 H 0.186 0.814 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.563 -5.665 0.679 10.290 hybrid contribution -1.076 0.867 -0.337 1.422 sum 7.488 -4.798 0.342 8.900 Atomic orbital electron populations 1.23655 0.74011 1.06343 1.02535 1.86484 1.25371 1.30674 1.83730 1.21271 0.89550 0.81992 0.72000 1.90830 1.67637 1.37351 1.46862 1.19508 0.89630 0.94852 1.09456 1.21703 0.93811 0.97554 0.91606 1.21602 0.94318 0.98744 0.98563 1.20791 0.98016 0.91858 0.95049 1.25270 0.89031 1.11651 0.93519 1.86540 1.78175 1.54463 1.16132 0.85345 0.79258 0.73644 0.82293 1.16632 1.20043 1.16742 1.21470 0.88527 1.02786 1.00413 1.18433 0.90245 0.80593 1.04381 1.85683 1.74003 1.44864 1.57688 1.06040 0.78759 0.74722 0.72937 1.93559 1.59505 1.61059 1.82907 1.93566 1.83978 1.47612 1.72282 1.30864 1.19826 1.15231 1.09690 1.21233 1.01421 1.01836 0.91442 1.26228 0.98180 1.07036 1.17986 0.78323 0.65375 0.65030 0.65291 1.26413 1.05954 1.14284 1.11195 1.26229 1.16939 1.07330 1.06181 1.26494 1.13586 1.13910 1.04357 0.91812 0.83839 0.92425 0.80400 0.81409 0.83410 0.75706 0.80063 0.81408 0.81428 0.90215 0.89434 0.88044 0.88700 0.90607 0.91560 0.91701 0.91063 0.91661 0.90724 0.91821 0.91535 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.07 10.57 113.37 1.20 1.27 16 2 O -0.35 -2.34 9.81 -56.60 -0.56 -2.90 16 3 C 0.51 6.29 7.17 70.23 0.50 6.79 16 4 O -0.54 -10.74 13.32 29.49 0.39 -10.35 16 5 C -0.13 -0.81 5.31 -20.02 -0.11 -0.91 16 6 C -0.03 0.08 9.61 22.53 0.22 0.30 16 7 C -0.11 0.85 8.64 22.24 0.19 1.05 16 8 C -0.06 0.42 5.40 -19.83 -0.11 0.31 16 9 C -0.08 0.90 2.81 71.24 0.20 1.10 16 10 O -0.55 4.62 12.76 -148.98 -1.90 2.72 16 11 Si 0.97 -9.49 25.05 68.60 1.72 -7.77 16 12 H -0.24 2.44 7.11 99.48 0.71 3.15 16 13 H -0.28 1.31 7.11 99.48 0.71 2.01 16 14 H -0.24 2.33 7.11 99.48 0.71 3.03 16 15 C -0.11 0.42 8.00 22.34 0.18 0.60 16 16 C 0.11 0.54 4.81 22.86 0.11 0.65 16 17 O -0.66 -6.96 8.57 -55.68 -0.48 -7.44 16 18 S 2.57 27.16 4.41 -56.49 -0.25 26.91 16 19 O -0.97 -19.04 18.09 -118.57 -2.15 -21.19 16 20 O -0.98 -14.18 14.70 -115.82 -1.70 -15.89 16 21 C -0.62 1.68 5.46 71.98 0.39 2.07 16 22 C -0.12 0.28 4.59 30.59 0.14 0.42 16 23 C -0.41 2.88 4.45 71.98 0.32 3.20 16 24 Si 1.07 -6.78 12.19 68.60 0.84 -5.94 16 25 C -0.47 1.45 8.65 113.37 0.98 2.43 16 26 C -0.46 2.22 8.65 113.37 0.98 3.20 16 27 C -0.48 0.82 8.65 113.37 0.98 1.80 16 28 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 29 H 0.14 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.18 -1.31 7.61 -2.91 -0.02 -1.33 16 32 H 0.17 -2.14 4.85 -2.91 -0.01 -2.16 16 33 H 0.15 -2.09 7.96 -2.39 -0.02 -2.11 16 34 H 0.39 -5.61 8.70 -74.06 -0.64 -6.26 16 35 H 0.18 -1.70 7.49 -2.91 -0.02 -1.72 16 36 H 0.17 -1.56 6.60 -2.39 -0.02 -1.57 16 37 H 0.17 -1.28 8.14 -2.39 -0.02 -1.30 16 38 H 0.08 -0.14 7.79 -2.38 -0.02 -0.15 16 39 H 0.09 -0.29 7.79 -2.38 -0.02 -0.31 16 40 H 0.10 -1.05 7.96 -2.39 -0.02 -1.06 16 41 H 0.09 -0.83 7.96 -2.38 -0.02 -0.85 16 42 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 43 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 44 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 45 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 46 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 47 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 48 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 49 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 50 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 Total: 0.00 -33.70 421.62 3.16 -30.54 By element: Atomic # 1 Polarization: -14.04 SS G_CDS: 1.06 Total: -12.98 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: 6.18 Total: 24.27 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -6.39 Total: -55.03 kcal Atomic # 14 Polarization: -16.26 SS G_CDS: 2.55 Total: -13.71 kcal Atomic # 16 Polarization: 27.16 SS G_CDS: -0.25 Total: 26.91 kcal Total: -33.70 3.16 -30.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16464680_14927650.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.602 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds