Wall clock time and date at job start Mon Mar 8 2021 12:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.47228 * 2 1 4 4 C 1.34225 * 116.99744 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00024 * 180.27635 * 4 3 2 7 7 H 1.08993 * 112.84902 * 48.52729 * 6 4 3 8 8 C 1.53781 * 113.61393 * 179.72418 * 6 4 3 9 9 C 1.53779 * 87.07796 * 139.98027 * 8 6 4 10 10 F 1.39903 * 113.61466 * 219.92991 * 9 8 6 11 11 C 1.53005 * 113.61711 * 89.11595 * 9 8 6 12 12 S 1.81395 * 109.47182 * 184.99832 * 11 9 8 13 13 O 1.42098 * 110.54200 * 286.45975 * 12 11 9 14 14 O 1.42098 * 110.54447 * 63.21795 * 12 11 9 15 15 O 1.52209 * 104.44554 * 174.83788 * 12 11 9 16 16 C 1.35643 * 113.99832 * 75.50949 * 15 12 11 17 17 C 1.40191 * 120.15842 * 95.71804 * 16 15 12 18 18 C 1.47401 * 120.19678 * 359.97149 * 17 16 15 19 19 O 1.21512 * 119.99954 * 355.28418 * 18 17 16 20 20 O 1.34748 * 120.00237 * 175.28761 * 18 17 16 21 21 C 1.45201 * 117.00432 * 179.97438 * 20 18 17 22 22 C 1.39772 * 119.60666 * 179.70243 * 17 16 15 23 23 C 1.37765 * 119.89701 * 0.60711 * 22 17 16 24 24 C 1.38564 * 120.30952 * 359.66498 * 23 22 17 25 25 C 1.50706 * 119.79643 * 179.97438 * 24 23 22 26 26 O 1.42892 * 109.46967 * 120.01934 * 25 24 23 27 27 Si 1.86306 * 109.47202 * 0.02562 * 25 24 23 28 28 C 1.38041 * 120.40574 * 0.02562 * 24 23 22 29 29 C 1.53773 * 87.08474 * 334.56813 * 9 8 6 30 30 H 1.08999 * 109.46862 * 59.99650 * 1 2 3 31 31 H 1.09001 * 109.47370 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46754 * 299.99991 * 1 2 3 33 33 H 1.09004 * 109.46754 * 240.00009 * 2 1 3 34 34 H 1.08999 * 109.46862 * 120.00350 * 2 1 3 35 35 H 1.09003 * 113.61097 * 254.52451 * 8 6 4 36 36 H 1.08995 * 113.61649 * 25.34471 * 8 6 4 37 37 H 1.08997 * 109.46648 * 304.99951 * 11 9 8 38 38 H 1.09000 * 109.47063 * 64.99228 * 11 9 8 39 39 H 1.09001 * 109.47078 * 299.99998 * 21 20 18 40 40 H 1.09002 * 109.46674 * 59.99466 * 21 20 18 41 41 H 1.08992 * 109.47194 * 179.97438 * 21 20 18 42 42 H 1.07993 * 120.05094 * 180.27751 * 22 17 16 43 43 H 1.07997 * 119.84446 * 179.67956 * 23 22 17 44 44 H 1.08997 * 109.46690 * 240.02094 * 25 24 23 45 45 H 0.96696 * 114.00650 * 300.00060 * 26 25 24 46 46 H 1.48498 * 109.99789 * 58.67836 * 27 25 24 47 47 H 1.48492 * 109.99993 * 179.97438 * 27 25 24 48 48 H 1.07999 * 119.95922 * 180.02562 * 28 24 23 49 49 H 1.09006 * 113.61123 * 270.88741 * 29 9 8 50 50 H 1.08994 * 113.62055 * 139.98667 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9209 2.9373 0.0057 7 1 3.4688 3.5789 0.7619 8 6 5.4584 2.9678 0.0110 9 6 5.3600 4.1452 -0.9733 10 9 6.3176 4.1052 -1.9924 11 6 5.2776 5.5112 -0.2888 12 16 5.0176 6.7993 -1.5391 13 8 6.2114 7.0281 -2.2751 14 8 3.7743 6.6088 -2.2004 15 8 4.8225 8.0762 -0.7339 16 6 5.9693 8.5820 -0.2153 17 6 6.6653 9.5907 -0.8961 18 6 6.1555 10.1068 -2.1793 19 8 5.1776 9.6001 -2.6925 20 8 6.7740 11.1405 -2.7832 21 6 6.2174 11.5959 -4.0446 22 6 7.8425 10.1080 -0.3482 23 6 8.3171 9.6162 0.8480 24 6 7.6291 8.6152 1.5148 25 6 8.1591 8.0853 2.8223 26 8 7.1902 8.2989 3.8506 27 14 9.7358 8.9760 3.2601 28 6 6.4619 8.0996 0.9883 29 6 3.9912 3.5811 -1.3890 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.8863 3.2400 0.9759 36 1 5.9143 2.0755 -0.4177 37 1 4.4457 5.5150 0.4154 38 1 6.2071 5.7062 0.2460 39 1 6.2383 10.7797 -4.7668 40 1 5.1878 11.9194 -3.8917 41 1 6.8080 12.4306 -4.4220 42 1 8.3820 10.8882 -0.8643 43 1 9.2296 10.0129 1.2680 44 1 8.3590 7.0180 2.7274 45 1 6.9634 9.2285 3.9904 46 1 9.4831 10.4359 3.3609 47 1 10.2682 8.4630 4.5478 48 1 5.9312 7.3198 1.5143 49 1 4.0461 2.8570 -2.2019 50 1 3.2348 4.3481 -1.5546 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16464680_15494190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:25 Heat of formation + Delta-G solvation = -279.855138 kcal Electronic energy + Delta-G solvation = -42564.066425 eV Core-core repulsion = 36760.779694 eV Total energy + Delta-G solvation = -5803.286731 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.116 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -49.13801 -42.82705 -41.95556 -41.23114 -39.97715 -39.64462 -38.55751 -37.71348 -37.64424 -37.59209 -37.39225 -33.39778 -32.79427 -32.11083 -31.48011 -29.16193 -27.48129 -27.33988 -27.10777 -25.08902 -24.08374 -23.99188 -22.81940 -22.45411 -21.54747 -20.45946 -19.82292 -19.51248 -19.24494 -18.97503 -18.70327 -18.30804 -18.08467 -17.95443 -17.67668 -17.55603 -17.11656 -16.88816 -16.54357 -16.40651 -16.30244 -16.12597 -16.03304 -15.54761 -15.50096 -15.04067 -14.92653 -14.73389 -14.61293 -14.49119 -14.27896 -14.23610 -14.17685 -13.73970 -13.71333 -13.55371 -13.52582 -13.47836 -13.33926 -13.21136 -13.09462 -13.02317 -12.94608 -12.76883 -12.53580 -12.50121 -12.40258 -12.10001 -11.96920 -11.85533 -11.73223 -11.60554 -11.55493 -11.48621 -10.78434 -10.37860 -10.30573 -4.83385 -1.48601 -0.75559 -0.20607 0.76580 0.94933 1.13527 1.31407 1.41225 1.51684 1.67750 2.06158 2.17853 2.24229 2.56955 2.61794 2.79868 2.89925 3.09180 3.13823 3.19631 3.30020 3.39875 3.49564 3.56954 3.71090 3.78493 3.82222 3.89703 3.94595 4.00532 4.01269 4.16452 4.20639 4.24300 4.29296 4.35330 4.37354 4.41924 4.51016 4.55071 4.63707 4.64970 4.71174 4.72182 4.79837 4.81523 4.87017 4.96003 4.97330 5.08884 5.10177 5.36943 5.37528 6.38899 6.49804 6.56090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.474 3.526 5 O -0.532 6.532 6 C -0.102 4.102 7 H 0.174 0.826 8 C -0.111 4.111 9 C 0.093 3.907 10 F -0.200 7.200 11 C -0.655 4.655 12 S 2.587 3.413 13 O -0.964 6.964 14 O -0.951 6.951 15 O -0.657 6.657 16 C 0.103 3.897 17 C -0.130 4.130 18 C 0.502 3.498 19 O -0.534 6.534 20 O -0.345 6.345 21 C 0.027 3.973 22 C -0.027 4.027 23 C -0.101 4.101 24 C -0.053 4.053 25 C -0.085 4.085 26 O -0.540 6.540 27 Si 0.763 3.237 28 C -0.124 4.124 29 C -0.165 4.165 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.207 0.793 38 H 0.192 0.808 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.144 0.856 42 H 0.182 0.818 43 H 0.181 0.819 44 H 0.151 0.849 45 H 0.391 0.609 46 H -0.271 1.271 47 H -0.305 1.305 48 H 0.184 0.816 49 H 0.107 0.893 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 3.246 7.285 9.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.318 3.682 5 O -0.421 6.421 6 C -0.120 4.120 7 H 0.191 0.809 8 C -0.149 4.149 9 C 0.073 3.927 10 F -0.181 7.181 11 C -0.783 4.783 12 S 2.685 3.315 13 O -0.962 6.962 14 O -0.950 6.950 15 O -0.615 6.615 16 C 0.061 3.939 17 C -0.134 4.134 18 C 0.348 3.652 19 O -0.425 6.425 20 O -0.261 6.261 21 C -0.066 4.066 22 C -0.045 4.045 23 C -0.119 4.119 24 C -0.054 4.054 25 C -0.194 4.194 26 O -0.348 6.348 27 Si 0.668 3.332 28 C -0.143 4.143 29 C -0.202 4.202 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.154 0.846 36 H 0.124 0.876 37 H 0.224 0.776 38 H 0.209 0.791 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.162 0.838 42 H 0.200 0.800 43 H 0.198 0.802 44 H 0.168 0.832 45 H 0.241 0.759 46 H -0.197 1.197 47 H -0.233 1.233 48 H 0.201 0.799 49 H 0.126 0.874 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.665 3.094 7.017 8.976 hybrid contribution -1.560 -0.225 -0.077 1.578 sum 3.105 2.870 6.940 8.126 Atomic orbital electron populations 1.21839 0.90781 1.04300 1.03756 1.23293 0.96894 0.79153 1.02694 1.86524 1.24041 1.33693 1.83278 1.23676 0.80716 0.92513 0.71321 1.90686 1.61093 1.43943 1.46397 1.22504 0.97571 0.91025 1.00911 0.80869 1.23601 0.93384 0.96425 1.01538 1.21805 0.88338 0.94572 0.87980 1.92961 1.66215 1.97388 1.61494 1.31318 1.18345 1.09585 1.19067 1.05628 0.74079 0.75432 0.76322 1.93603 1.50226 1.82194 1.70218 1.93584 1.44859 1.84833 1.71677 1.85715 1.42133 1.57856 1.75836 1.18436 0.82846 0.97570 0.95091 1.19508 0.99589 1.00656 0.93622 1.21327 0.80638 0.78000 0.85246 1.90848 1.27386 1.58472 1.65837 1.86492 1.55467 1.46091 1.38065 1.23669 1.00830 1.01194 0.80930 1.21777 0.90928 0.97321 0.94501 1.21629 1.00814 0.95190 0.94271 1.20689 0.93170 0.94459 0.97040 1.25403 1.00840 1.09607 0.83526 1.86619 1.60181 1.32922 1.55102 0.94042 0.78144 0.76884 0.84162 1.21550 0.97655 1.03121 0.92010 1.23994 0.96384 1.02337 0.97529 0.91499 0.88495 0.91032 0.91479 0.90867 0.84623 0.87614 0.77594 0.79057 0.92316 0.91834 0.83818 0.80040 0.80228 0.83187 0.75903 1.19697 1.23281 0.79857 0.87433 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.47 10.29 71.98 0.74 1.21 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.18 10.22 -51.37 -0.53 -1.71 16 4 C 0.47 1.63 7.48 71.24 0.53 2.17 16 5 O -0.53 -4.97 15.65 21.97 0.34 -4.62 16 6 C -0.10 0.34 3.91 -11.01 -0.04 0.30 16 7 H 0.17 -1.96 7.61 -2.39 -0.02 -1.98 16 8 C -0.11 0.45 6.89 31.12 0.21 0.67 16 9 C 0.09 -0.02 1.74 -10.27 -0.02 -0.04 16 10 F -0.20 -1.41 16.76 44.97 0.75 -0.65 16 11 C -0.66 3.21 4.68 71.98 0.34 3.55 16 12 S 2.59 23.10 4.24 -56.49 -0.24 22.86 16 13 O -0.96 -14.13 15.28 -116.66 -1.78 -15.91 16 14 O -0.95 -15.31 16.74 -118.57 -1.99 -17.30 16 15 O -0.66 -5.23 8.45 -55.70 -0.47 -5.71 16 16 C 0.10 0.33 4.71 22.86 0.11 0.44 16 17 C -0.13 -0.57 5.42 -20.02 -0.11 -0.68 16 18 C 0.50 5.39 7.55 70.24 0.53 5.92 16 19 O -0.53 -9.85 13.67 28.65 0.39 -9.46 16 20 O -0.35 -1.76 9.83 -56.59 -0.56 -2.31 16 21 C 0.03 0.03 10.57 113.37 1.20 1.23 16 22 C -0.03 0.14 9.61 22.53 0.22 0.35 16 23 C -0.10 1.01 8.64 22.24 0.19 1.20 16 24 C -0.05 0.49 5.39 -19.83 -0.11 0.38 16 25 C -0.08 0.97 2.81 71.24 0.20 1.17 16 26 O -0.54 4.40 12.76 -148.98 -1.90 2.50 16 27 Si 0.76 -8.29 29.77 68.60 2.04 -6.25 16 28 C -0.12 0.72 8.01 22.34 0.18 0.90 16 29 C -0.16 -0.11 6.97 31.12 0.22 0.11 16 30 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 33 H 0.07 0.12 8.13 -2.38 -0.02 0.10 16 34 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 35 H 0.14 -1.51 8.10 -2.39 -0.02 -1.53 16 36 H 0.11 -0.01 7.43 -2.39 -0.02 -0.03 16 37 H 0.21 -2.91 7.31 -2.39 -0.02 -2.93 16 38 H 0.19 -2.33 6.49 -2.39 -0.02 -2.35 16 39 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.14 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H 0.18 -1.78 7.62 -2.91 -0.02 -1.80 16 43 H 0.18 -2.94 4.85 -2.91 -0.01 -2.95 16 44 H 0.15 -2.25 7.96 -2.39 -0.02 -2.27 16 45 H 0.39 -5.13 8.70 -74.06 -0.64 -5.77 16 46 H -0.27 2.11 7.11 99.48 0.71 2.81 16 47 H -0.30 0.45 7.11 99.48 0.71 1.15 16 48 H 0.18 -2.31 6.93 -2.91 -0.02 -2.33 16 49 H 0.11 0.23 8.09 -2.38 -0.02 0.21 16 50 H 0.11 0.09 6.82 -2.39 -0.02 0.07 16 Total: 0.00 -41.78 431.47 1.32 -40.46 By element: Atomic # 1 Polarization: -21.69 SS G_CDS: 0.41 Total: -21.28 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 4.83 Total: 19.38 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -6.49 Total: -54.52 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.75 Total: -0.65 kcal Atomic # 14 Polarization: -8.29 SS G_CDS: 2.04 Total: -6.25 kcal Atomic # 16 Polarization: 23.10 SS G_CDS: -0.24 Total: 22.86 kcal Total: -41.78 1.32 -40.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16464680_15494190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.393 kcal (2) G-P(sol) polarization free energy of solvation -41.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -281.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -279.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds