Wall clock time and date at job start Mon Mar 8 2021 12:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34752 * 117.00172 * 2 1 4 4 O 1.21513 * 119.99939 * 359.97438 * 3 2 1 5 5 C 1.47399 * 120.00593 * 180.02562 * 3 2 1 6 6 C 1.40185 * 120.20250 * 185.47640 * 5 3 2 7 7 O 1.35644 * 120.15676 * 0.02562 * 6 5 3 8 8 S 1.52200 * 114.00036 * 93.62000 * 7 6 5 9 9 O 1.42096 * 104.27614 * 192.01616 * 8 7 6 10 10 O 1.42098 * 104.27958 * 319.87548 * 8 7 6 11 11 C 1.81404 * 104.44593 * 75.94690 * 8 7 6 12 12 H 1.09000 * 112.84994 * 306.10071 * 11 8 7 13 13 C 1.53783 * 113.61493 * 77.40766 * 11 8 7 14 14 C 1.53783 * 87.08233 * 139.97878 * 13 11 8 15 15 H 1.08996 * 113.69133 * 220.00885 * 14 13 11 16 16 O 1.42904 * 113.60959 * 89.11295 * 14 13 11 17 17 C 1.42902 * 113.99520 * 112.50701 * 16 14 13 18 18 C 1.50702 * 109.47003 * 180.02562 * 17 16 14 19 19 C 1.38238 * 119.99685 * 269.72514 * 18 17 16 20 20 C 1.38234 * 119.99831 * 179.74303 * 19 18 17 21 21 C 1.38229 * 119.99900 * 0.55478 * 20 19 18 22 22 C 1.38242 * 120.00113 * 359.69781 * 21 20 19 23 23 C 1.38226 * 120.00296 * 89.99959 * 18 17 16 24 24 C 1.53779 * 113.61304 * 174.90555 * 11 8 7 25 25 C 1.38711 * 119.69478 * 180.02562 * 6 5 3 26 26 C 1.38051 * 120.08679 * 0.02865 * 25 6 5 27 27 C 1.50703 * 119.79570 * 179.97438 * 26 25 6 28 28 O 1.42903 * 109.46883 * 299.99182 * 27 26 25 29 29 Si 1.86299 * 109.46953 * 179.97438 * 27 26 25 30 30 C 1.38566 * 120.40473 * 0.24645 * 26 25 6 31 31 C 1.37766 * 120.30411 * 359.44931 * 30 26 25 32 32 H 1.09005 * 109.47603 * 300.00037 * 1 2 3 33 33 H 1.08998 * 109.47614 * 60.00246 * 1 2 3 34 34 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 35 35 H 1.08999 * 113.61823 * 254.53403 * 13 11 8 36 36 H 1.09006 * 113.61329 * 25.42948 * 13 11 8 37 37 H 1.09007 * 109.47325 * 299.99804 * 17 16 14 38 38 H 1.09002 * 109.47179 * 59.99711 * 17 16 14 39 39 H 1.08004 * 119.99697 * 359.97438 * 19 18 17 40 40 H 1.08005 * 119.99872 * 180.27060 * 20 19 18 41 41 H 1.08001 * 120.00049 * 179.72417 * 21 20 19 42 42 H 1.07997 * 120.00055 * 180.02562 * 22 21 20 43 43 H 1.08010 * 120.00299 * 0.02562 * 23 18 17 44 44 H 1.09001 * 113.61735 * 334.56360 * 24 11 8 45 45 H 1.08996 * 113.61491 * 105.46939 * 24 11 8 46 46 H 1.07995 * 119.95416 * 179.97438 * 25 6 5 47 47 H 1.08997 * 109.47629 * 59.99508 * 27 26 25 48 48 H 0.96696 * 114.00025 * 300.00026 * 28 27 26 49 49 H 1.48504 * 110.00085 * 58.68006 * 29 27 26 50 50 H 1.48502 * 110.00091 * 179.97438 * 29 27 26 51 51 H 1.07999 * 119.84600 * 179.71073 * 30 26 25 52 52 H 1.08004 * 120.04510 * 180.27412 * 31 30 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5357 1.2779 -0.0006 6 6 4.1767 2.5192 0.1151 7 8 3.4454 3.6559 0.2286 8 16 3.1935 4.0890 1.6658 9 8 2.1990 5.0982 1.5585 10 8 2.9339 2.8751 2.3573 11 6 4.7707 4.8045 2.2058 12 1 5.6134 4.1283 2.0621 13 6 5.0190 6.2241 1.6691 14 6 5.5948 6.5622 3.0544 15 1 5.3133 7.5511 3.4162 16 8 6.9961 6.3071 3.1696 17 6 7.7910 7.4853 3.3183 18 6 9.2438 7.1005 3.4294 19 6 9.8005 6.8542 4.6706 20 6 11.1318 6.4959 4.7721 21 6 11.9091 6.3952 3.6336 22 6 11.3537 6.6466 2.3929 23 6 10.0210 6.9992 2.2909 24 6 4.7149 5.4297 3.6096 25 6 5.5625 2.5797 0.1128 26 6 6.3056 1.4221 -0.0034 27 6 7.8109 1.4955 -0.0057 28 8 8.2468 2.3003 -1.1032 29 14 8.5160 -0.2206 -0.1748 30 6 5.6759 0.1936 -0.1237 31 6 4.3006 0.1139 -0.1170 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 5.7566 6.2652 0.8677 36 1 4.1042 6.7674 1.4320 37 1 7.6516 8.1297 2.4502 38 1 7.4859 8.0181 4.2190 39 1 9.1944 6.9380 5.5605 40 1 11.5656 6.2992 5.7414 41 1 12.9504 6.1197 3.7133 42 1 11.9610 6.5675 1.5033 43 1 9.5873 7.1964 1.3216 44 1 3.7171 5.7559 3.9030 45 1 5.2071 4.8294 4.3748 46 1 6.0607 3.5338 0.2012 47 1 8.1545 1.9387 0.9289 48 1 7.9761 1.9649 -1.9688 49 1 8.0295 -0.8483 -1.4296 50 1 9.9998 -0.1619 -0.1790 51 1 6.2661 -0.7058 -0.2188 52 1 3.8142 -0.8463 -0.2066 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16464680_15608174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:23:12 Heat of formation + Delta-G solvation = -157.088024 kcal Electronic energy + Delta-G solvation = -42009.753871 eV Core-core repulsion = 36615.248468 eV Total energy + Delta-G solvation = -5394.505403 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 435.126 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.81883 -41.23309 -40.83492 -40.02228 -39.92676 -38.55641 -37.73185 -37.62737 -37.41370 -37.06576 -33.39136 -32.70252 -31.96699 -31.81297 -29.18006 -27.71609 -27.32624 -27.09937 -26.52085 -24.99118 -24.06351 -23.50466 -22.83042 -22.29411 -21.82620 -20.82314 -19.72872 -19.53325 -19.02238 -18.97315 -18.37586 -18.09897 -17.82796 -17.55910 -17.43821 -17.00383 -16.72183 -16.63422 -16.37648 -16.26829 -16.15442 -15.80589 -15.58659 -15.31643 -15.11730 -14.81286 -14.71721 -14.63999 -14.38143 -14.29212 -14.25967 -14.11746 -13.91681 -13.67096 -13.61261 -13.57316 -13.50134 -13.43006 -13.33975 -13.23686 -13.17345 -12.97721 -12.43297 -12.18972 -12.09291 -11.98407 -11.89473 -11.86567 -11.78144 -11.76264 -11.31035 -10.81574 -10.61971 -10.40323 -10.31515 -9.84759 -9.79132 -4.87973 -1.37646 -0.74890 -0.21231 0.30398 0.47584 0.76902 1.10462 1.26875 1.39999 1.64003 2.01800 2.16726 2.36555 2.40342 2.59330 2.84837 2.95446 3.12712 3.18542 3.28193 3.36328 3.40022 3.48029 3.63691 3.75244 3.77077 3.86605 3.89727 3.91380 4.12703 4.18059 4.19484 4.22983 4.27494 4.33028 4.33362 4.35998 4.43252 4.49229 4.58107 4.60040 4.62708 4.64233 4.68915 4.69798 4.73384 4.77145 4.78656 4.79962 4.94251 5.06031 5.06647 5.12979 5.35029 5.52955 5.60270 5.62697 6.06468 6.14387 6.37180 6.45479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.344 6.344 3 C 0.504 3.496 4 O -0.535 6.535 5 C -0.132 4.132 6 C 0.108 3.892 7 O -0.661 6.661 8 S 2.587 3.413 9 O -0.958 6.958 10 O -0.977 6.977 11 C -0.621 4.621 12 H 0.176 0.824 13 C -0.135 4.135 14 C 0.083 3.917 15 H 0.112 0.888 16 O -0.368 6.368 17 C 0.099 3.901 18 C -0.106 4.106 19 C -0.110 4.110 20 C -0.133 4.133 21 C -0.123 4.123 22 C -0.135 4.135 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.054 4.054 27 C -0.091 4.091 28 O -0.541 6.541 29 Si 0.773 3.227 30 C -0.101 4.101 31 C -0.026 4.026 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.145 0.855 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.167 0.833 47 H 0.139 0.861 48 H 0.390 0.610 49 H -0.265 1.265 50 H -0.302 1.302 51 H 0.183 0.817 52 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.925 -4.357 1.450 8.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.260 6.260 3 C 0.350 3.650 4 O -0.427 6.427 5 C -0.135 4.135 6 C 0.066 3.934 7 O -0.620 6.620 8 S 2.688 3.312 9 O -0.956 6.956 10 O -0.975 6.975 11 C -0.732 4.732 12 H 0.193 0.807 13 C -0.174 4.174 14 C 0.024 3.976 15 H 0.130 0.870 16 O -0.287 6.287 17 C 0.023 3.977 18 C -0.106 4.106 19 C -0.128 4.128 20 C -0.151 4.151 21 C -0.141 4.141 22 C -0.152 4.152 23 C -0.129 4.129 24 C -0.154 4.154 25 C -0.141 4.141 26 C -0.055 4.055 27 C -0.199 4.199 28 O -0.350 6.350 29 Si 0.676 3.324 30 C -0.119 4.119 31 C -0.044 4.044 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.185 0.815 47 H 0.156 0.844 48 H 0.240 0.760 49 H -0.190 1.190 50 H -0.230 1.230 51 H 0.200 0.800 52 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.666 -4.538 1.270 8.164 hybrid contribution -0.496 1.513 -1.065 1.916 sum 6.170 -3.025 0.205 6.875 Atomic orbital electron populations 1.23680 0.73942 1.06479 1.02558 1.86490 1.25412 1.30497 1.83605 1.21284 0.89504 0.82104 0.72100 1.90866 1.67594 1.37305 1.46901 1.19513 0.89808 0.94747 1.09436 1.18369 0.89921 0.80760 1.04322 1.85664 1.74129 1.46063 1.56096 1.05713 0.78171 0.74548 0.72796 1.93567 1.56638 1.61552 1.83881 1.93566 1.85282 1.44657 1.74010 1.32166 1.20811 1.10080 1.10122 0.80666 1.23393 1.04004 0.89544 1.00432 1.22825 0.81395 0.99096 0.94298 0.86990 1.87943 1.15891 1.31444 1.93450 1.21547 0.86810 0.87115 1.02232 1.19766 0.94804 1.02210 0.93842 1.21323 0.95737 0.98265 0.97490 1.21458 0.94214 0.99824 0.99596 1.21524 1.00904 0.98974 0.92717 1.21438 0.95499 0.99782 0.98528 1.21287 0.94335 0.98781 0.98487 1.23080 1.02292 0.97710 0.92294 1.21405 0.88980 1.02333 1.01422 1.20694 0.97453 0.92235 0.95134 1.25510 0.90014 1.10186 0.94223 1.86628 1.78529 1.52086 1.17732 0.93997 0.77292 0.74402 0.86752 1.21610 0.94148 0.98421 0.97710 1.21796 0.93761 0.97476 0.91357 0.92454 0.91710 0.83685 0.87407 0.86920 0.90994 0.90633 0.84822 0.84374 0.84498 0.84694 0.85172 0.86821 0.86962 0.81521 0.84368 0.75993 1.19047 1.23014 0.79991 0.79688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.06 10.56 113.37 1.20 1.26 16 2 O -0.34 -2.24 9.83 -56.63 -0.56 -2.80 16 3 C 0.50 6.37 7.26 70.23 0.51 6.88 16 4 O -0.54 -10.81 14.08 27.86 0.39 -10.42 16 5 C -0.13 -0.92 5.37 -20.02 -0.11 -1.03 16 6 C 0.11 0.79 4.73 22.86 0.11 0.90 16 7 O -0.66 -8.09 8.38 -55.71 -0.47 -8.56 16 8 S 2.59 29.96 4.54 -56.49 -0.26 29.71 16 9 O -0.96 -17.67 17.41 -118.57 -2.06 -19.73 16 10 O -0.98 -15.25 15.45 -117.46 -1.82 -17.06 16 11 C -0.62 -0.74 3.76 31.12 0.12 -0.62 16 12 H 0.18 -0.44 6.12 -2.39 -0.01 -0.45 16 13 C -0.14 0.15 7.47 31.12 0.23 0.38 16 14 C 0.08 -0.22 4.38 31.12 0.14 -0.08 16 15 H 0.11 -0.76 7.87 -2.39 -0.02 -0.78 16 16 O -0.37 0.04 10.25 -148.98 -1.53 -1.49 16 17 C 0.10 -0.22 5.90 71.24 0.42 0.20 16 18 C -0.11 -0.10 5.51 -19.87 -0.11 -0.21 16 19 C -0.11 -0.07 9.70 22.27 0.22 0.15 16 20 C -0.13 -0.02 10.05 22.27 0.22 0.20 16 21 C -0.12 -0.03 10.05 22.27 0.22 0.20 16 22 C -0.13 -0.09 10.05 22.27 0.22 0.13 16 23 C -0.11 -0.12 9.70 22.26 0.22 0.10 16 24 C -0.11 0.15 7.50 31.12 0.23 0.38 16 25 C -0.12 0.02 8.08 22.34 0.18 0.20 16 26 C -0.05 0.26 5.39 -19.83 -0.11 0.16 16 27 C -0.09 0.61 2.81 71.24 0.20 0.82 16 28 O -0.54 1.86 12.76 -148.98 -1.90 -0.04 16 29 Si 0.77 -6.48 29.77 68.60 2.04 -4.44 16 30 C -0.10 0.73 8.64 22.24 0.19 0.92 16 31 C -0.03 0.07 9.61 22.53 0.22 0.29 16 32 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 33 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.15 -0.85 8.14 -2.39 -0.02 -0.87 16 35 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H 0.11 -0.08 7.53 -2.38 -0.02 -0.09 16 37 H 0.07 -0.32 8.09 -2.38 -0.02 -0.34 16 38 H 0.08 -0.38 8.08 -2.39 -0.02 -0.40 16 39 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 40 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 41 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 42 H 0.14 -0.34 8.06 -2.91 -0.02 -0.37 16 43 H 0.13 -0.19 8.06 -2.91 -0.02 -0.22 16 44 H 0.11 -0.32 8.10 -2.39 -0.02 -0.33 16 45 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 46 H 0.17 -0.56 6.95 -2.91 -0.02 -0.58 16 47 H 0.14 -1.15 7.96 -2.39 -0.02 -1.17 16 48 H 0.39 -3.57 8.70 -74.06 -0.64 -4.21 16 49 H -0.26 1.66 7.10 99.48 0.71 2.36 16 50 H -0.30 -0.16 7.11 99.48 0.71 0.55 16 51 H 0.18 -2.59 4.85 -2.91 -0.01 -2.60 16 52 H 0.19 -1.55 7.62 -2.91 -0.02 -1.57 16 Total: 0.00 -35.13 446.09 -1.26 -36.39 By element: Atomic # 1 Polarization: -13.15 SS G_CDS: 0.37 Total: -12.78 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 4.52 Total: 11.22 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -7.94 Total: -60.10 kcal Atomic # 14 Polarization: -6.48 SS G_CDS: 2.04 Total: -4.44 kcal Atomic # 16 Polarization: 29.96 SS G_CDS: -0.26 Total: 29.71 kcal Total: -35.13 -1.26 -36.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16464680_15608174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.694 kcal (2) G-P(sol) polarization free energy of solvation -35.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds