Wall clock time and date at job start Mon Mar 8 2021 13:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45195 * 109.47425 * 2 1 4 4 C 1.34224 * 117.00300 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00080 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00194 * 179.97438 * 4 3 2 7 7 H 1.09004 * 112.84768 * 311.20115 * 6 4 3 8 8 C 1.53952 * 113.74208 * 82.40592 * 6 4 3 9 9 C 1.53781 * 87.01956 * 139.94760 * 8 6 4 10 10 F 1.39896 * 113.61611 * 89.22986 * 9 8 6 11 11 C 1.52999 * 113.61105 * 220.05097 * 9 8 6 12 12 S 1.81407 * 109.46811 * 284.13415 * 11 9 8 13 13 O 1.42091 * 110.54272 * 68.37799 * 12 11 9 14 14 O 1.42098 * 110.53980 * 291.62492 * 12 11 9 15 15 O 1.52204 * 104.44729 * 180.02562 * 12 11 9 16 16 C 1.35630 * 114.00331 * 74.99647 * 15 12 11 17 17 C 1.40202 * 120.15528 * 90.00097 * 16 15 12 18 18 C 1.47402 * 120.19379 * 0.02562 * 17 16 15 19 19 O 1.21513 * 120.00149 * 359.72506 * 18 17 16 20 20 O 1.34754 * 119.99824 * 179.44578 * 18 17 16 21 21 C 1.45202 * 116.99763 * 180.27224 * 20 18 17 22 22 C 1.39762 * 119.61055 * 179.74955 * 17 16 15 23 23 C 1.37772 * 119.90058 * 0.25407 * 22 17 16 24 24 C 1.38562 * 120.30545 * 0.02562 * 23 22 17 25 25 C 1.50698 * 119.79669 * 179.97438 * 24 23 22 26 26 O 1.42902 * 109.47491 * 119.99787 * 25 24 23 27 27 Si 1.86303 * 109.47239 * 359.97438 * 25 24 23 28 28 C 1.38055 * 120.40452 * 359.97438 * 24 23 22 29 29 C 1.53781 * 113.61486 * 180.02562 * 6 4 3 30 30 H 1.09005 * 109.47479 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47597 * 300.00260 * 1 2 3 32 32 H 1.09003 * 109.47191 * 60.00311 * 1 2 3 33 33 H 1.09008 * 109.47274 * 239.99770 * 2 1 3 34 34 H 1.09005 * 109.47274 * 120.00227 * 2 1 3 35 35 H 1.08995 * 113.61559 * 25.41879 * 8 6 4 36 36 H 1.09002 * 113.66376 * 254.47364 * 8 6 4 37 37 H 1.09001 * 109.47343 * 164.13865 * 11 9 8 38 38 H 1.08999 * 109.47510 * 44.13327 * 11 9 8 39 39 H 1.09004 * 109.46770 * 60.00905 * 21 20 18 40 40 H 1.09001 * 109.46882 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.47630 * 300.00501 * 21 20 18 42 42 H 1.08003 * 120.05508 * 180.22805 * 22 17 16 43 43 H 1.07995 * 119.84681 * 180.02562 * 23 22 17 44 44 H 1.08999 * 109.47339 * 240.00010 * 25 24 23 45 45 H 0.96697 * 113.99884 * 299.99949 * 26 25 24 46 46 H 1.48507 * 109.99929 * 58.68060 * 27 25 24 47 47 H 1.48494 * 110.00240 * 180.02562 * 27 25 24 48 48 H 1.08005 * 119.94919 * 179.97438 * 28 24 23 49 49 H 1.09002 * 113.61381 * 105.38877 * 29 6 4 50 50 H 1.09000 * 113.61644 * 334.48264 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.4714 3.5809 -0.7564 8 6 3.9849 3.5821 1.3965 9 6 5.3560 4.1444 0.9857 10 9 5.2849 5.3941 0.3609 11 6 6.3977 4.0983 2.1054 12 16 6.0574 5.4182 3.3025 13 8 4.8526 5.1533 4.0077 14 8 6.3019 6.6923 2.7227 15 8 7.1486 5.2688 4.3530 16 6 8.3662 5.7101 3.9503 17 6 8.7391 7.0440 4.1679 18 6 7.8106 7.9739 4.8357 19 8 6.7164 7.5864 5.1949 20 8 8.1774 9.2523 5.0528 21 6 7.2149 10.1098 5.7209 22 6 9.9987 7.4854 3.7530 23 6 10.8619 6.6110 3.1298 24 6 10.4872 5.2950 2.9115 25 6 11.4402 4.3485 2.2283 26 8 11.7336 3.2554 3.1009 27 14 13.0162 5.2492 1.8089 28 6 9.2461 4.8456 3.3161 29 6 5.4582 2.9680 0.0001 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.0356 2.8582 2.2098 36 1 3.2288 4.3503 1.5589 37 1 7.3923 4.2391 1.6824 38 1 6.3496 3.1318 2.6069 39 1 6.9846 9.7002 6.7044 40 1 7.6353 11.1092 5.8334 41 1 6.3025 10.1637 5.1270 42 1 10.2948 8.5105 3.9203 43 1 11.8351 6.9528 2.8100 44 1 10.9837 3.9706 1.3135 45 1 12.1427 3.5183 3.9367 46 1 13.6322 5.7971 3.0441 47 1 13.9643 4.3268 1.1341 48 1 8.9614 3.8184 3.1419 49 1 5.8896 3.2413 -0.9630 50 1 5.9127 2.0758 0.4307 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16464680_16464788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:00:50 Heat of formation + Delta-G solvation = -274.788325 kcal Electronic energy + Delta-G solvation = -42548.988013 eV Core-core repulsion = 36745.920996 eV Total energy + Delta-G solvation = -5803.067017 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.116 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -49.17409 -42.79626 -41.79791 -41.01357 -40.08868 -39.38444 -38.26387 -37.82778 -37.45690 -37.43202 -37.08967 -33.49510 -32.88121 -32.29032 -31.81213 -29.15598 -27.55056 -27.42429 -26.95245 -25.10318 -24.17697 -23.97664 -22.76822 -22.33391 -21.26175 -20.92186 -19.61109 -19.41206 -19.19024 -18.83866 -18.67887 -18.27873 -18.03612 -17.74410 -17.63663 -17.36202 -17.26144 -16.93423 -16.61193 -16.42605 -16.23627 -16.17352 -16.15249 -15.55250 -15.41646 -15.23390 -14.72505 -14.66289 -14.59402 -14.55188 -14.33787 -14.29244 -14.03900 -13.81285 -13.79179 -13.62310 -13.39033 -13.30005 -13.17729 -13.13647 -13.08426 -13.01041 -12.99175 -12.94594 -12.58375 -12.56663 -12.48912 -11.99663 -11.93573 -11.78963 -11.64311 -11.55710 -11.52476 -11.38940 -11.02927 -10.53111 -10.41166 -5.18079 -1.37035 -0.76726 -0.32061 0.83602 1.00134 1.05534 1.25512 1.37437 1.49215 1.53904 1.76302 2.12458 2.37865 2.54637 2.67443 2.71185 2.92450 2.96423 3.06165 3.08088 3.10003 3.20332 3.36181 3.47574 3.60001 3.68276 3.73280 3.77463 3.90984 3.94485 3.97393 4.11686 4.16721 4.19514 4.22945 4.26906 4.28529 4.29405 4.30228 4.44597 4.50497 4.52827 4.56476 4.64404 4.66261 4.69446 4.78714 4.79186 4.90646 5.00855 5.18557 5.27068 5.40529 6.09483 6.60534 6.66272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.476 3.524 5 O -0.503 6.503 6 C -0.108 4.108 7 H 0.139 0.861 8 C -0.149 4.149 9 C 0.104 3.896 10 F -0.169 7.169 11 C -0.683 4.683 12 S 2.601 3.399 13 O -0.903 6.903 14 O -0.927 6.927 15 O -0.647 6.647 16 C 0.129 3.871 17 C -0.095 4.095 18 C 0.514 3.486 19 O -0.491 6.491 20 O -0.350 6.350 21 C 0.035 3.965 22 C -0.036 4.036 23 C -0.112 4.112 24 C -0.066 4.066 25 C -0.084 4.084 26 O -0.524 6.524 27 Si 0.691 3.309 28 C -0.121 4.121 29 C -0.120 4.120 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.163 0.837 43 H 0.151 0.849 44 H 0.130 0.870 45 H 0.380 0.620 46 H -0.253 1.253 47 H -0.251 1.251 48 H 0.156 0.844 49 H 0.102 0.898 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.567 1.486 -2.777 5.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.318 3.682 5 O -0.390 6.390 6 C -0.127 4.127 7 H 0.157 0.843 8 C -0.187 4.187 9 C 0.084 3.916 10 F -0.149 7.149 11 C -0.807 4.807 12 S 2.693 3.307 13 O -0.901 6.901 14 O -0.926 6.926 15 O -0.605 6.605 16 C 0.086 3.914 17 C -0.099 4.099 18 C 0.358 3.642 19 O -0.379 6.379 20 O -0.266 6.266 21 C -0.058 4.058 22 C -0.054 4.054 23 C -0.130 4.130 24 C -0.067 4.067 25 C -0.193 4.193 26 O -0.331 6.331 27 Si 0.591 3.409 28 C -0.141 4.141 29 C -0.158 4.158 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.170 0.830 38 H 0.179 0.821 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.180 0.820 43 H 0.168 0.832 44 H 0.147 0.853 45 H 0.229 0.771 46 H -0.178 1.178 47 H -0.175 1.175 48 H 0.173 0.827 49 H 0.121 0.879 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.627 1.255 -2.520 5.416 hybrid contribution -0.233 -1.198 0.811 1.466 sum 4.394 0.057 -1.708 4.715 Atomic orbital electron populations 1.21829 0.92195 1.03329 1.03794 1.23129 0.95749 0.79604 1.02835 1.86519 1.23999 1.32977 1.83467 1.23201 0.80910 0.91793 0.72287 1.90689 1.60545 1.42713 1.45076 1.22500 0.97183 0.92097 1.00964 0.84347 1.23868 0.96087 1.02027 0.96695 1.21152 0.95276 0.82286 0.92849 1.93011 1.97001 1.41541 1.83328 1.31495 1.09751 1.23956 1.15472 1.05545 0.74753 0.75908 0.74495 1.93657 1.41547 1.85885 1.69038 1.93654 1.83342 1.36598 1.78986 1.85749 1.28929 1.84352 1.61471 1.17981 0.83046 0.91411 0.98947 1.19331 0.95823 0.91174 1.03528 1.20602 0.85443 0.81764 0.76377 1.90855 1.22170 1.77345 1.47532 1.86486 1.46998 1.21089 1.72024 1.23420 0.92377 0.92854 0.97173 1.21501 0.90057 1.01280 0.92533 1.21283 1.00596 0.92636 0.98488 1.20499 0.94331 0.95027 0.96795 1.25242 1.06069 0.92181 0.95853 1.86644 1.82490 1.31547 1.32401 0.94870 0.75862 0.84487 0.85711 1.21198 0.93420 1.00266 0.99205 1.23590 0.93788 0.97649 1.00795 0.89933 0.91243 0.91303 0.90978 0.90978 0.86423 0.87091 0.83015 0.82087 0.91437 0.87351 0.91175 0.81975 0.83217 0.85259 0.77136 1.17784 1.17540 0.82661 0.87904 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.22 10.29 37.15 0.38 0.61 16 2 C 0.06 0.02 6.19 37.15 0.23 0.25 16 3 O -0.35 -0.61 10.22 -39.24 -0.40 -1.01 16 4 C 0.48 0.85 7.49 36.01 0.27 1.12 16 5 O -0.50 -2.04 15.65 -18.75 -0.29 -2.34 16 6 C -0.11 0.05 4.23 -90.87 -0.38 -0.33 16 7 H 0.14 -0.28 8.14 -51.93 -0.42 -0.70 16 8 C -0.15 0.01 6.76 -25.83 -0.17 -0.17 16 9 C 0.10 0.01 1.56 -89.79 -0.14 -0.13 16 10 F -0.17 -0.34 16.58 2.25 0.04 -0.31 16 11 C -0.68 0.65 5.10 37.16 0.19 0.84 16 12 S 2.60 10.45 4.16 -107.50 -0.45 10.00 16 13 O -0.90 -6.26 17.84 -67.03 -1.20 -7.46 16 14 O -0.93 -5.55 14.31 -69.88 -1.00 -6.55 16 15 O -0.65 -2.46 8.57 -54.02 -0.46 -2.92 16 16 C 0.13 0.25 4.81 -38.67 -0.19 0.06 16 17 C -0.10 -0.20 5.30 -104.86 -0.56 -0.75 16 18 C 0.51 2.32 7.18 34.46 0.25 2.57 16 19 O -0.49 -3.74 13.34 -29.38 -0.39 -4.14 16 20 O -0.35 -0.74 9.82 -40.64 -0.40 -1.14 16 21 C 0.04 0.00 10.57 101.05 1.07 1.07 16 22 C -0.04 0.06 9.61 -39.18 -0.38 -0.31 16 23 C -0.11 0.39 8.64 -39.63 -0.34 0.05 16 24 C -0.07 0.19 5.40 -104.57 -0.56 -0.38 16 25 C -0.08 0.31 2.81 36.00 0.10 0.41 16 26 O -0.52 1.05 12.76 -35.23 -0.45 0.60 16 27 Si 0.69 -2.80 29.77 -169.99 -5.06 -7.86 16 28 C -0.12 0.16 7.99 -39.48 -0.32 -0.15 16 29 C -0.12 0.15 6.86 -25.90 -0.18 -0.02 16 30 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 31 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 32 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 33 H 0.07 0.01 8.14 -51.92 -0.42 -0.41 16 34 H 0.07 0.01 8.13 -51.93 -0.42 -0.41 16 35 H 0.12 -0.11 8.01 -51.93 -0.42 -0.53 16 36 H 0.11 -0.04 8.14 -51.93 -0.42 -0.46 16 37 H 0.15 -0.55 6.58 -51.92 -0.34 -0.89 16 38 H 0.16 -0.61 8.09 -51.92 -0.42 -1.03 16 39 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 40 H 0.11 -0.33 8.14 -51.93 -0.42 -0.75 16 41 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.16 -0.65 7.61 -52.48 -0.40 -1.05 16 43 H 0.15 -0.93 4.85 -52.49 -0.25 -1.18 16 44 H 0.13 -0.63 7.96 -51.93 -0.41 -1.05 16 45 H 0.38 -1.80 8.70 45.56 0.40 -1.41 16 46 H -0.25 0.61 7.11 56.52 0.40 1.01 16 47 H -0.25 0.08 7.11 56.52 0.40 0.48 16 48 H 0.16 -0.55 7.46 -52.48 -0.39 -0.94 16 49 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 50 H 0.12 -0.20 7.40 -51.93 -0.38 -0.58 16 LS Contribution 434.23 15.07 6.54 6.54 Total: 0.00 -14.19 434.23 -10.72 -24.91 By element: Atomic # 1 Polarization: -6.57 SS G_CDS: -6.47 Total: -13.04 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.73 Total: 4.71 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -4.59 Total: -24.96 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.04 Total: -0.31 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: -5.06 Total: -7.86 kcal Atomic # 16 Polarization: 10.45 SS G_CDS: -0.45 Total: 10.00 kcal Total LS contribution 6.54 Total: 6.54 kcal Total: -14.19 -10.72 -24.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16464680_16464788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -249.878 kcal (2) G-P(sol) polarization free energy of solvation -14.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds