Wall clock time and date at job start Mon Mar 8 2021 13:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45195 * 109.47425 * 2 1 4 4 C 1.34224 * 117.00300 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00080 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00194 * 179.97438 * 4 3 2 7 7 H 1.09004 * 112.84768 * 311.20115 * 6 4 3 8 8 C 1.53952 * 113.74208 * 82.40592 * 6 4 3 9 9 C 1.53781 * 87.01956 * 139.94760 * 8 6 4 10 10 F 1.39896 * 113.61611 * 89.22986 * 9 8 6 11 11 C 1.52999 * 113.61105 * 220.05097 * 9 8 6 12 12 S 1.81407 * 109.46811 * 284.13415 * 11 9 8 13 13 O 1.42091 * 110.54272 * 68.37799 * 12 11 9 14 14 O 1.42098 * 110.53980 * 291.62492 * 12 11 9 15 15 O 1.52204 * 104.44729 * 180.02562 * 12 11 9 16 16 C 1.35630 * 114.00331 * 74.99647 * 15 12 11 17 17 C 1.40202 * 120.15528 * 90.00097 * 16 15 12 18 18 C 1.47402 * 120.19379 * 0.02562 * 17 16 15 19 19 O 1.21513 * 120.00149 * 359.72506 * 18 17 16 20 20 O 1.34754 * 119.99824 * 179.44578 * 18 17 16 21 21 C 1.45202 * 116.99763 * 180.27224 * 20 18 17 22 22 C 1.39762 * 119.61055 * 179.74955 * 17 16 15 23 23 C 1.37772 * 119.90058 * 0.25407 * 22 17 16 24 24 C 1.38562 * 120.30545 * 0.02562 * 23 22 17 25 25 C 1.50698 * 119.79669 * 179.97438 * 24 23 22 26 26 O 1.42902 * 109.47491 * 119.99787 * 25 24 23 27 27 Si 1.86303 * 109.47239 * 359.97438 * 25 24 23 28 28 C 1.38055 * 120.40452 * 359.97438 * 24 23 22 29 29 C 1.53781 * 113.61486 * 180.02562 * 6 4 3 30 30 H 1.09005 * 109.47479 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47597 * 300.00260 * 1 2 3 32 32 H 1.09003 * 109.47191 * 60.00311 * 1 2 3 33 33 H 1.09008 * 109.47274 * 239.99770 * 2 1 3 34 34 H 1.09005 * 109.47274 * 120.00227 * 2 1 3 35 35 H 1.08995 * 113.61559 * 25.41879 * 8 6 4 36 36 H 1.09002 * 113.66376 * 254.47364 * 8 6 4 37 37 H 1.09001 * 109.47343 * 164.13865 * 11 9 8 38 38 H 1.08999 * 109.47510 * 44.13327 * 11 9 8 39 39 H 1.09004 * 109.46770 * 60.00905 * 21 20 18 40 40 H 1.09001 * 109.46882 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.47630 * 300.00501 * 21 20 18 42 42 H 1.08003 * 120.05508 * 180.22805 * 22 17 16 43 43 H 1.07995 * 119.84681 * 180.02562 * 23 22 17 44 44 H 1.08999 * 109.47339 * 240.00010 * 25 24 23 45 45 H 0.96697 * 113.99884 * 299.99949 * 26 25 24 46 46 H 1.48507 * 109.99929 * 58.68060 * 27 25 24 47 47 H 1.48494 * 110.00240 * 180.02562 * 27 25 24 48 48 H 1.08005 * 119.94919 * 179.97438 * 28 24 23 49 49 H 1.09002 * 113.61381 * 105.38877 * 29 6 4 50 50 H 1.09000 * 113.61644 * 334.48264 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.4714 3.5809 -0.7564 8 6 3.9849 3.5821 1.3965 9 6 5.3560 4.1444 0.9857 10 9 5.2849 5.3941 0.3609 11 6 6.3977 4.0983 2.1054 12 16 6.0574 5.4182 3.3025 13 8 4.8526 5.1533 4.0077 14 8 6.3019 6.6923 2.7227 15 8 7.1486 5.2688 4.3530 16 6 8.3662 5.7101 3.9503 17 6 8.7391 7.0440 4.1679 18 6 7.8106 7.9739 4.8357 19 8 6.7164 7.5864 5.1949 20 8 8.1774 9.2523 5.0528 21 6 7.2149 10.1098 5.7209 22 6 9.9987 7.4854 3.7530 23 6 10.8619 6.6110 3.1298 24 6 10.4872 5.2950 2.9115 25 6 11.4402 4.3485 2.2283 26 8 11.7336 3.2554 3.1009 27 14 13.0162 5.2492 1.8089 28 6 9.2461 4.8456 3.3161 29 6 5.4582 2.9680 0.0001 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.0356 2.8582 2.2098 36 1 3.2288 4.3503 1.5589 37 1 7.3923 4.2391 1.6824 38 1 6.3496 3.1318 2.6069 39 1 6.9846 9.7002 6.7044 40 1 7.6353 11.1092 5.8334 41 1 6.3025 10.1637 5.1270 42 1 10.2948 8.5105 3.9203 43 1 11.8351 6.9528 2.8100 44 1 10.9837 3.9706 1.3135 45 1 12.1427 3.5183 3.9367 46 1 13.6322 5.7971 3.0441 47 1 13.9643 4.3268 1.1341 48 1 8.9614 3.8184 3.1419 49 1 5.8896 3.2413 -0.9630 50 1 5.9127 2.0758 0.4307 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16464680_16464788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:00:47 Heat of formation + Delta-G solvation = -278.399142 kcal Electronic energy + Delta-G solvation = -42549.144590 eV Core-core repulsion = 36745.920996 eV Total energy + Delta-G solvation = -5803.223594 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.116 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -49.23094 -42.84776 -41.88670 -41.21262 -39.98874 -39.38380 -38.54911 -37.71240 -37.61675 -37.58421 -37.37273 -33.40508 -32.85794 -32.22452 -31.74764 -29.16413 -27.45185 -27.33954 -26.96142 -25.07764 -24.07402 -23.93891 -22.87178 -22.39506 -21.31120 -20.90462 -19.70085 -19.50231 -19.26002 -18.89221 -18.76578 -18.34407 -18.07184 -17.81790 -17.68560 -17.53616 -17.26845 -16.93696 -16.50909 -16.32594 -16.24757 -16.20139 -16.05476 -15.52767 -15.44422 -15.04245 -14.74931 -14.70103 -14.67187 -14.60978 -14.32886 -14.24435 -14.21193 -13.74312 -13.70875 -13.56472 -13.49637 -13.47055 -13.34926 -13.21202 -13.12532 -13.00111 -12.98084 -12.94286 -12.55628 -12.47741 -12.41589 -11.96622 -11.95463 -11.85978 -11.74280 -11.60052 -11.54772 -11.45526 -10.79694 -10.38691 -10.31889 -4.84943 -1.47898 -0.75401 -0.21230 0.75651 0.94906 1.14133 1.30074 1.41503 1.52638 1.66995 2.05317 2.17497 2.29849 2.59398 2.64275 2.70373 2.86458 3.10955 3.12915 3.15772 3.27766 3.38641 3.48431 3.56760 3.72427 3.77735 3.80483 3.88717 3.94888 4.00730 4.03480 4.20740 4.24586 4.25778 4.29191 4.30873 4.35391 4.38356 4.51095 4.56976 4.62610 4.65152 4.70918 4.72130 4.78995 4.80203 4.86920 4.95140 4.98816 5.09305 5.09978 5.36128 5.37408 6.39197 6.47743 6.56117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.477 3.523 5 O -0.528 6.528 6 C -0.107 4.107 7 H 0.153 0.847 8 C -0.161 4.161 9 C 0.095 3.905 10 F -0.182 7.182 11 C -0.660 4.660 12 S 2.587 3.413 13 O -0.953 6.953 14 O -0.961 6.961 15 O -0.659 6.659 16 C 0.099 3.901 17 C -0.129 4.129 18 C 0.506 3.494 19 O -0.536 6.536 20 O -0.345 6.345 21 C 0.027 3.973 22 C -0.028 4.028 23 C -0.099 4.099 24 C -0.055 4.055 25 C -0.088 4.088 26 O -0.542 6.542 27 Si 0.769 3.231 28 C -0.117 4.117 29 C -0.108 4.108 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.185 0.815 38 H 0.194 0.806 39 H 0.063 0.937 40 H 0.144 0.856 41 H 0.057 0.943 42 H 0.184 0.816 43 H 0.182 0.818 44 H 0.149 0.851 45 H 0.391 0.609 46 H -0.270 1.270 47 H -0.304 1.304 48 H 0.178 0.822 49 H 0.120 0.880 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 0.894 -4.246 8.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.320 3.680 5 O -0.417 6.417 6 C -0.126 4.126 7 H 0.170 0.830 8 C -0.199 4.199 9 C 0.075 3.925 10 F -0.163 7.163 11 C -0.788 4.788 12 S 2.686 3.314 13 O -0.952 6.952 14 O -0.959 6.959 15 O -0.618 6.618 16 C 0.057 3.943 17 C -0.132 4.132 18 C 0.352 3.648 19 O -0.428 6.428 20 O -0.261 6.261 21 C -0.066 4.066 22 C -0.046 4.046 23 C -0.117 4.117 24 C -0.056 4.056 25 C -0.196 4.196 26 O -0.350 6.350 27 Si 0.673 3.327 28 C -0.137 4.137 29 C -0.146 4.146 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.203 0.797 38 H 0.212 0.788 39 H 0.082 0.918 40 H 0.162 0.838 41 H 0.076 0.924 42 H 0.201 0.799 43 H 0.199 0.801 44 H 0.166 0.834 45 H 0.241 0.759 46 H -0.196 1.196 47 H -0.233 1.233 48 H 0.195 0.805 49 H 0.138 0.862 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.802 0.734 -3.944 7.897 hybrid contribution -0.789 -1.068 1.232 1.811 sum 6.013 -0.334 -2.712 6.605 Atomic orbital electron populations 1.21840 0.90919 1.04310 1.03677 1.23300 0.96830 0.79083 1.02803 1.86530 1.24184 1.33812 1.83261 1.23601 0.80701 0.92313 0.71338 1.90670 1.60950 1.43677 1.46400 1.22617 0.98055 0.90928 1.01005 0.82976 1.23999 0.96331 1.02226 0.97319 1.21344 0.95436 0.82213 0.93463 1.92988 1.97068 1.42597 1.83599 1.31355 1.11289 1.22713 1.13460 1.05613 0.74217 0.76672 0.74897 1.93585 1.44121 1.86683 1.70775 1.93596 1.83513 1.39385 1.79401 1.85709 1.29799 1.84454 1.61822 1.18437 0.82904 0.92196 1.00798 1.19537 0.97075 0.91170 1.05421 1.21270 0.85381 0.82462 0.75709 1.90827 1.24129 1.78137 1.49701 1.86486 1.47191 1.20522 1.71862 1.23668 0.92268 0.94138 0.96531 1.21784 0.88636 1.02584 0.91553 1.21633 1.01236 0.92047 0.96746 1.20692 0.93701 0.95420 0.95763 1.25461 1.06133 0.91911 0.96144 1.86627 1.82685 1.32447 1.33275 0.94043 0.73433 0.82421 0.82799 1.21468 0.93265 1.00773 0.98210 1.23608 0.93013 0.96872 1.01132 0.88411 0.91468 0.91258 0.90928 0.91118 0.85781 0.87636 0.79722 0.78839 0.91836 0.83779 0.92367 0.79920 0.80103 0.83400 0.75936 1.19634 1.23268 0.80452 0.86192 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.44 10.29 71.98 0.74 1.18 16 2 C 0.05 0.05 6.19 71.98 0.45 0.49 16 3 O -0.36 -1.40 10.22 -51.36 -0.52 -1.92 16 4 C 0.48 1.69 7.49 71.24 0.53 2.23 16 5 O -0.53 -4.18 15.65 21.96 0.34 -3.83 16 6 C -0.11 0.14 4.23 -10.95 -0.05 0.10 16 7 H 0.15 -0.68 8.14 -2.38 -0.02 -0.70 16 8 C -0.16 -0.06 6.76 31.18 0.21 0.15 16 9 C 0.10 -0.04 1.56 -10.26 -0.02 -0.05 16 10 F -0.18 -0.79 16.58 44.97 0.75 -0.05 16 11 C -0.66 1.80 5.10 71.98 0.37 2.17 16 12 S 2.59 25.83 4.16 -56.49 -0.24 25.59 16 13 O -0.95 -16.47 17.84 -118.57 -2.12 -18.58 16 14 O -0.96 -14.02 14.31 -115.85 -1.66 -15.68 16 15 O -0.66 -6.31 8.57 -55.54 -0.48 -6.79 16 16 C 0.10 0.44 4.81 22.86 0.11 0.55 16 17 C -0.13 -0.65 5.30 -20.02 -0.11 -0.76 16 18 C 0.51 5.77 7.18 70.24 0.50 6.27 16 19 O -0.54 -10.22 13.34 29.46 0.39 -9.82 16 20 O -0.34 -1.96 9.82 -56.65 -0.56 -2.52 16 21 C 0.03 0.05 10.57 113.37 1.20 1.24 16 22 C -0.03 0.12 9.61 22.53 0.22 0.34 16 23 C -0.10 0.93 8.64 22.24 0.19 1.12 16 24 C -0.06 0.44 5.40 -19.83 -0.11 0.34 16 25 C -0.09 0.88 2.81 71.24 0.20 1.09 16 26 O -0.54 3.39 12.76 -148.98 -1.90 1.49 16 27 Si 0.77 -7.90 29.77 68.60 2.04 -5.86 16 28 C -0.12 0.48 7.99 22.34 0.18 0.66 16 29 C -0.11 0.45 6.86 31.13 0.21 0.67 16 30 H 0.10 -0.59 8.14 -2.38 -0.02 -0.61 16 31 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.07 -0.20 8.14 -2.39 -0.02 -0.21 16 33 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 34 H 0.07 0.07 8.13 -2.38 -0.02 0.05 16 35 H 0.12 -0.17 8.01 -2.39 -0.02 -0.19 16 36 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.19 -1.77 6.58 -2.39 -0.02 -1.78 16 38 H 0.19 -1.82 8.09 -2.39 -0.02 -1.84 16 39 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 40 H 0.14 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.18 -1.73 7.61 -2.91 -0.02 -1.75 16 43 H 0.18 -2.89 4.85 -2.91 -0.01 -2.90 16 44 H 0.15 -1.98 7.96 -2.39 -0.02 -2.00 16 45 H 0.39 -4.46 8.70 -74.06 -0.64 -5.11 16 46 H -0.27 1.97 7.11 99.48 0.71 2.68 16 47 H -0.30 0.28 7.11 99.48 0.71 0.99 16 48 H 0.18 -1.68 7.46 -2.91 -0.02 -1.71 16 49 H 0.12 -0.87 8.14 -2.39 -0.02 -0.89 16 50 H 0.13 -0.71 7.40 -2.39 -0.02 -0.73 16 Total: 0.00 -38.82 434.23 1.30 -37.51 By element: Atomic # 1 Polarization: -17.72 SS G_CDS: 0.41 Total: -17.31 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 4.84 Total: 17.78 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -6.49 Total: -57.67 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.75 Total: -0.05 kcal Atomic # 14 Polarization: -7.90 SS G_CDS: 2.04 Total: -5.86 kcal Atomic # 16 Polarization: 25.83 SS G_CDS: -0.24 Total: 25.59 kcal Total: -38.82 1.30 -37.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16464680_16464788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -240.886 kcal (2) G-P(sol) polarization free energy of solvation -38.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -278.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds