Wall clock time and date at job start Mon Mar 8 2021 14:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34754 * 117.00427 * 2 1 4 4 O 1.21508 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.47396 * 120.00191 * 179.97438 * 3 2 1 6 6 C 1.40191 * 120.20010 * 179.97438 * 5 3 2 7 7 O 1.35644 * 120.14972 * 0.02562 * 6 5 3 8 8 S 1.52201 * 113.99708 * 89.99965 * 7 6 5 9 9 O 1.42103 * 104.27667 * 191.06895 * 8 7 6 10 10 O 1.42096 * 104.28019 * 318.92498 * 8 7 6 11 11 C 1.81408 * 104.45170 * 74.99799 * 8 7 6 12 12 C 1.53000 * 109.46962 * 180.02562 * 11 8 7 13 13 H 1.09000 * 112.84702 * 314.66238 * 12 11 8 14 14 C 1.53775 * 113.61379 * 85.86780 * 12 11 8 15 15 C 1.54043 * 86.98920 * 89.15728 * 14 12 11 16 16 O 1.42901 * 113.61303 * 270.88388 * 15 14 12 17 17 C 1.42903 * 113.99981 * 162.82534 * 16 15 14 18 18 C 1.53003 * 113.69893 * 139.98831 * 15 14 12 19 19 F 1.39905 * 109.46554 * 326.99905 * 18 15 14 20 20 F 1.39895 * 109.47314 * 86.99495 * 18 15 14 21 21 F 1.39895 * 109.47319 * 206.99882 * 18 15 14 22 22 C 1.53784 * 113.60938 * 183.47418 * 12 11 8 23 23 C 1.38705 * 119.69677 * 180.02562 * 6 5 3 24 24 C 1.38049 * 120.08518 * 0.02562 * 23 6 5 25 25 C 1.50701 * 119.79841 * 179.97438 * 24 23 6 26 26 O 1.42894 * 109.47655 * 300.00131 * 25 24 23 27 27 Si 1.86306 * 109.47465 * 179.97438 * 25 24 23 28 28 C 1.38571 * 120.40711 * 359.97438 * 24 23 6 29 29 C 1.37763 * 120.30492 * 359.97438 * 28 24 23 30 30 H 1.09010 * 109.46862 * 60.00082 * 1 2 3 31 31 H 1.08991 * 109.47521 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46874 * 300.00624 * 1 2 3 33 33 H 1.09001 * 109.46697 * 299.99868 * 11 8 7 34 34 H 1.09007 * 109.46893 * 59.99788 * 11 8 7 35 35 H 1.09001 * 113.61144 * 203.66392 * 14 12 11 36 36 H 1.09004 * 113.61418 * 334.55693 * 14 12 11 37 37 H 1.08998 * 109.47069 * 183.02485 * 17 16 15 38 38 H 1.08999 * 109.46765 * 303.01832 * 17 16 15 39 39 H 1.08996 * 109.47618 * 63.01834 * 17 16 15 40 40 H 1.08998 * 113.61600 * 25.42407 * 22 12 11 41 41 H 1.09001 * 113.61607 * 156.25462 * 22 12 11 42 42 H 1.07997 * 119.96157 * 179.97438 * 23 6 5 43 43 H 1.09007 * 109.46957 * 60.00213 * 25 24 23 44 44 H 0.96703 * 114.00017 * 300.00362 * 26 25 24 45 45 H 1.48498 * 110.00012 * 180.02562 * 27 25 24 46 46 H 1.48496 * 109.99747 * 301.32421 * 27 25 24 47 47 H 1.08000 * 119.84969 * 180.02562 * 28 24 23 48 48 H 1.07991 * 120.04621 * 180.27692 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2197 -0.0005 5 6 3.5358 1.2777 0.0006 6 6 4.1766 2.5246 0.0000 7 8 3.4449 3.6667 -0.0005 8 16 3.1109 4.1885 1.3897 9 8 2.1453 5.2054 1.1597 10 8 2.7838 3.0222 2.1326 11 6 4.6644 4.9094 1.9880 12 6 4.4560 5.4744 3.3945 13 1 3.5386 6.0559 3.4853 14 6 4.6380 4.4321 4.5103 15 6 6.1289 4.8196 4.5176 16 8 6.9230 4.0571 3.6066 17 6 8.1940 4.6411 3.3141 18 6 6.7383 4.8930 5.9191 19 9 5.7675 5.3289 6.8274 20 9 7.1942 3.6254 6.2965 21 9 7.8102 5.7920 5.9151 22 6 5.6953 6.1865 3.9620 23 6 5.5624 2.5849 0.0000 24 6 6.3057 1.4217 0.0000 25 6 7.8110 1.4948 -0.0005 26 8 8.2537 2.1904 -1.1675 27 14 8.5166 -0.2295 0.0004 28 6 5.6763 0.1871 0.0006 29 6 4.3010 0.1080 0.0016 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 5.4350 4.1390 2.0168 34 1 4.9757 5.7099 1.3167 35 1 4.1165 4.6851 5.4334 36 1 4.4531 3.4081 4.1856 37 1 8.7131 4.0303 2.5754 38 1 8.0495 5.6460 2.9176 39 1 8.7889 4.6923 4.2259 40 1 6.3636 6.5778 3.1949 41 1 5.4624 6.9193 4.7345 42 1 6.0605 3.5432 -0.0008 43 1 8.1493 2.0259 0.8893 44 1 7.9880 1.7734 -1.9986 45 1 10.0004 -0.1710 0.0005 46 1 8.0379 -0.9734 1.1931 47 1 6.2667 -0.7172 0.0010 48 1 3.8148 -0.8562 0.0066 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16464680_17541816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:09:06 Heat of formation + Delta-G solvation = -330.674311 kcal Electronic energy + Delta-G solvation = -46032.005819 eV Core-core repulsion = 39734.515785 eV Total energy + Delta-G solvation = -6297.490034 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 441.097 amu Computer time = 10.50 seconds Orbital eigenvalues (eV) -51.23834 -48.78292 -48.67145 -42.74047 -41.63934 -40.98238 -40.01404 -38.22356 -37.71448 -37.53823 -37.40393 -37.04303 -33.42395 -32.21309 -31.71973 -29.13357 -28.62594 -27.96765 -27.43879 -27.03270 -25.07765 -24.12986 -23.71339 -22.72347 -21.50506 -20.72086 -20.00074 -19.59073 -19.49246 -19.36863 -19.23446 -18.82078 -18.55965 -18.03657 -17.98094 -17.44916 -17.29884 -16.83126 -16.73566 -16.58494 -16.33998 -16.16010 -15.98114 -15.78046 -15.58794 -15.54153 -15.30652 -15.19622 -15.13445 -14.93692 -14.85426 -14.76925 -14.62453 -14.52409 -14.46748 -14.24097 -14.01201 -13.63399 -13.49934 -13.42411 -13.30014 -13.25242 -13.21175 -13.10742 -13.05104 -12.97869 -12.56529 -12.42733 -12.41183 -12.22205 -12.04205 -11.77521 -11.61515 -11.56730 -10.99403 -10.85521 -10.47406 -10.33154 -5.25323 -1.28139 -0.70438 -0.25416 0.89678 1.04451 1.28245 1.43512 1.46206 1.52191 1.78069 1.86213 2.17537 2.42235 2.52552 2.53214 2.71275 2.82000 3.00025 3.02712 3.10224 3.17300 3.24223 3.25350 3.39592 3.41549 3.56869 3.65377 3.75033 3.81730 3.95120 3.99907 4.08055 4.12390 4.20217 4.20355 4.22092 4.28821 4.30758 4.34118 4.40502 4.48591 4.50902 4.55279 4.59307 4.66434 4.68063 4.70482 4.83810 5.23363 5.29588 5.47915 6.26882 6.63212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.515 3.485 4 O -0.491 6.491 5 C -0.096 4.096 6 C 0.131 3.869 7 O -0.648 6.648 8 S 2.601 3.399 9 O -0.912 6.912 10 O -0.940 6.940 11 C -0.653 4.653 12 C -0.091 4.091 13 H 0.111 0.889 14 C -0.126 4.126 15 C 0.042 3.958 16 O -0.333 6.333 17 C 0.007 3.993 18 C 0.438 3.562 19 F -0.173 7.173 20 F -0.173 7.173 21 F -0.181 7.181 22 C -0.137 4.137 23 C -0.115 4.115 24 C -0.066 4.066 25 C -0.076 4.076 26 O -0.535 6.535 27 Si 0.692 3.308 28 C -0.114 4.114 29 C -0.037 4.037 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.154 0.846 43 H 0.124 0.876 44 H 0.383 0.617 45 H -0.249 1.249 46 H -0.250 1.250 47 H 0.149 0.851 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 -4.179 -3.298 6.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.358 3.642 4 O -0.379 6.379 5 C -0.099 4.099 6 C 0.088 3.912 7 O -0.606 6.606 8 S 2.695 3.305 9 O -0.910 6.910 10 O -0.938 6.938 11 C -0.778 4.778 12 C -0.111 4.111 13 H 0.129 0.871 14 C -0.163 4.163 15 C -0.001 4.001 16 O -0.251 6.251 17 C -0.088 4.088 18 C 0.383 3.617 19 F -0.155 7.155 20 F -0.154 7.154 21 F -0.162 7.162 22 C -0.175 4.175 23 C -0.135 4.135 24 C -0.066 4.066 25 C -0.186 4.186 26 O -0.340 6.340 27 Si 0.592 3.408 28 C -0.132 4.132 29 C -0.055 4.055 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.169 0.831 34 H 0.165 0.835 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.172 0.828 43 H 0.142 0.858 44 H 0.231 0.769 45 H -0.174 1.174 46 H -0.175 1.175 47 H 0.166 0.834 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.893 -4.316 -2.681 6.400 hybrid contribution 0.485 1.317 0.817 1.624 sum 4.378 -2.998 -1.864 5.624 Atomic orbital electron populations 1.23406 0.74865 1.04286 1.03236 1.86487 1.24414 1.31580 1.84181 1.20613 0.88266 0.82143 0.73131 1.90855 1.66496 1.36030 1.44546 1.19304 0.90755 0.93182 1.06702 1.17959 0.89002 0.81180 1.03035 1.85731 1.73137 1.44132 1.57626 1.05486 0.76462 0.75475 0.73127 1.93652 1.55079 1.60152 1.82131 1.93627 1.82080 1.46255 1.71870 1.30994 1.25519 1.14726 1.06600 1.21694 1.00952 0.98115 0.90296 0.87094 1.23542 0.89280 1.02434 1.01033 1.23992 0.93552 0.97357 0.85176 1.88028 1.29387 1.46765 1.60942 1.23178 0.83903 0.99813 1.01950 1.21109 0.76732 0.74070 0.89745 1.93190 1.62771 1.89666 1.69851 1.93223 1.89385 1.40106 1.92732 1.93194 1.57537 1.68533 1.96945 1.23591 0.97177 0.94611 1.02139 1.21147 0.90080 1.01021 1.01238 1.20518 0.97101 0.92368 0.96661 1.25242 0.90814 1.10489 0.92074 1.86536 1.78141 1.54025 1.15330 0.94685 0.81122 0.76258 0.88723 1.21266 0.94727 0.97430 0.99748 1.21475 0.93220 0.97972 0.92822 0.91421 0.87408 0.91265 0.83138 0.83503 0.85589 0.87231 0.88043 0.92380 0.92586 0.88286 0.86731 0.82799 0.85846 0.76873 1.17378 1.17467 0.83402 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.00 10.57 101.05 1.07 1.07 16 2 O -0.35 -0.71 9.82 -40.64 -0.40 -1.11 16 3 C 0.51 2.23 7.18 34.46 0.25 2.48 16 4 O -0.49 -3.66 13.35 -29.36 -0.39 -4.05 16 5 C -0.10 -0.19 5.30 -104.86 -0.56 -0.74 16 6 C 0.13 0.23 4.81 -38.68 -0.19 0.05 16 7 O -0.65 -2.36 8.56 -54.07 -0.46 -2.82 16 8 S 2.60 9.28 4.42 -107.50 -0.47 8.81 16 9 O -0.91 -6.51 18.09 -67.04 -1.21 -7.72 16 10 O -0.94 -4.80 14.53 -69.87 -1.02 -5.81 16 11 C -0.65 0.71 5.06 37.16 0.19 0.90 16 12 C -0.09 0.12 3.83 -89.81 -0.34 -0.23 16 13 H 0.11 -0.25 8.14 -51.93 -0.42 -0.67 16 14 C -0.13 0.09 6.92 -25.78 -0.18 -0.09 16 15 C 0.04 -0.02 0.85 -89.66 -0.08 -0.10 16 16 O -0.33 0.21 8.34 -35.23 -0.29 -0.08 16 17 C 0.01 -0.02 10.33 101.05 1.04 1.03 16 18 C 0.44 0.41 2.52 37.16 0.09 0.51 16 19 F -0.17 -0.19 15.82 2.25 0.04 -0.16 16 20 F -0.17 -0.44 17.11 2.25 0.04 -0.40 16 21 F -0.18 -0.20 15.33 2.25 0.03 -0.16 16 22 C -0.14 0.31 6.52 -25.91 -0.17 0.14 16 23 C -0.11 0.15 8.00 -39.48 -0.32 -0.17 16 24 C -0.07 0.18 5.40 -104.57 -0.56 -0.38 16 25 C -0.08 0.27 2.81 36.01 0.10 0.37 16 26 O -0.53 1.74 12.76 -35.23 -0.45 1.29 16 27 Si 0.69 -2.75 29.77 -169.99 -5.06 -7.81 16 28 C -0.11 0.38 8.64 -39.63 -0.34 0.04 16 29 C -0.04 0.06 9.61 -39.18 -0.38 -0.31 16 30 H 0.07 0.00 8.14 -51.92 -0.42 -0.43 16 31 H 0.11 -0.33 8.14 -51.93 -0.42 -0.75 16 32 H 0.07 0.05 8.14 -51.93 -0.42 -0.38 16 33 H 0.15 -0.31 4.54 -51.92 -0.24 -0.54 16 34 H 0.15 -0.54 8.14 -51.92 -0.42 -0.96 16 35 H 0.13 -0.25 7.04 -51.93 -0.37 -0.61 16 36 H 0.11 -0.02 7.91 -51.93 -0.41 -0.43 16 37 H 0.10 -0.39 8.14 -51.93 -0.42 -0.82 16 38 H 0.06 -0.20 6.60 -51.93 -0.34 -0.55 16 39 H 0.06 -0.08 6.56 -51.93 -0.34 -0.43 16 40 H 0.10 -0.34 6.64 -51.93 -0.35 -0.69 16 41 H 0.11 -0.37 8.04 -51.93 -0.42 -0.79 16 42 H 0.15 -0.49 7.50 -52.49 -0.39 -0.89 16 43 H 0.12 -0.46 7.96 -51.92 -0.41 -0.87 16 44 H 0.38 -2.64 8.70 45.56 0.40 -2.25 16 45 H -0.25 0.11 7.11 56.52 0.40 0.51 16 46 H -0.25 0.45 7.11 56.52 0.40 0.85 16 47 H 0.15 -0.89 4.85 -52.49 -0.25 -1.14 16 48 H 0.16 -0.63 7.61 -52.49 -0.40 -1.03 16 LS Contribution 413.25 15.07 6.23 6.23 Total: 0.00 -13.05 413.25 -9.05 -22.09 By element: Atomic # 1 Polarization: -7.59 SS G_CDS: -5.26 Total: -12.84 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.37 Total: 4.56 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -4.23 Total: -20.31 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 0.11 Total: -0.72 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: -5.06 Total: -7.81 kcal Atomic # 16 Polarization: 9.28 SS G_CDS: -0.47 Total: 8.81 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -13.05 -9.05 -22.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16464680_17541816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -308.581 kcal (2) G-P(sol) polarization free energy of solvation -13.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -321.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -330.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.50 seconds