Wall clock time and date at job start Mon Mar 8 2021 14:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34754 * 117.00427 * 2 1 4 4 O 1.21508 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.47396 * 120.00191 * 179.97438 * 3 2 1 6 6 C 1.40191 * 120.20010 * 179.97438 * 5 3 2 7 7 O 1.35644 * 120.14972 * 0.02562 * 6 5 3 8 8 S 1.52201 * 113.99708 * 89.99965 * 7 6 5 9 9 O 1.42103 * 104.27667 * 191.06895 * 8 7 6 10 10 O 1.42096 * 104.28019 * 318.92498 * 8 7 6 11 11 C 1.81408 * 104.45170 * 74.99799 * 8 7 6 12 12 C 1.53000 * 109.46962 * 180.02562 * 11 8 7 13 13 H 1.09000 * 112.84702 * 314.66238 * 12 11 8 14 14 C 1.53775 * 113.61379 * 85.86780 * 12 11 8 15 15 C 1.54043 * 86.98920 * 89.15728 * 14 12 11 16 16 O 1.42901 * 113.61303 * 270.88388 * 15 14 12 17 17 C 1.42903 * 113.99981 * 162.82534 * 16 15 14 18 18 C 1.53003 * 113.69893 * 139.98831 * 15 14 12 19 19 F 1.39905 * 109.46554 * 326.99905 * 18 15 14 20 20 F 1.39895 * 109.47314 * 86.99495 * 18 15 14 21 21 F 1.39895 * 109.47319 * 206.99882 * 18 15 14 22 22 C 1.53784 * 113.60938 * 183.47418 * 12 11 8 23 23 C 1.38705 * 119.69677 * 180.02562 * 6 5 3 24 24 C 1.38049 * 120.08518 * 0.02562 * 23 6 5 25 25 C 1.50701 * 119.79841 * 179.97438 * 24 23 6 26 26 O 1.42894 * 109.47655 * 300.00131 * 25 24 23 27 27 Si 1.86306 * 109.47465 * 179.97438 * 25 24 23 28 28 C 1.38571 * 120.40711 * 359.97438 * 24 23 6 29 29 C 1.37763 * 120.30492 * 359.97438 * 28 24 23 30 30 H 1.09010 * 109.46862 * 60.00082 * 1 2 3 31 31 H 1.08991 * 109.47521 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46874 * 300.00624 * 1 2 3 33 33 H 1.09001 * 109.46697 * 299.99868 * 11 8 7 34 34 H 1.09007 * 109.46893 * 59.99788 * 11 8 7 35 35 H 1.09001 * 113.61144 * 203.66392 * 14 12 11 36 36 H 1.09004 * 113.61418 * 334.55693 * 14 12 11 37 37 H 1.08998 * 109.47069 * 183.02485 * 17 16 15 38 38 H 1.08999 * 109.46765 * 303.01832 * 17 16 15 39 39 H 1.08996 * 109.47618 * 63.01834 * 17 16 15 40 40 H 1.08998 * 113.61600 * 25.42407 * 22 12 11 41 41 H 1.09001 * 113.61607 * 156.25462 * 22 12 11 42 42 H 1.07997 * 119.96157 * 179.97438 * 23 6 5 43 43 H 1.09007 * 109.46957 * 60.00213 * 25 24 23 44 44 H 0.96703 * 114.00017 * 300.00362 * 26 25 24 45 45 H 1.48498 * 110.00012 * 180.02562 * 27 25 24 46 46 H 1.48496 * 109.99747 * 301.32421 * 27 25 24 47 47 H 1.08000 * 119.84969 * 180.02562 * 28 24 23 48 48 H 1.07991 * 120.04621 * 180.27692 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2197 -0.0005 5 6 3.5358 1.2777 0.0006 6 6 4.1766 2.5246 0.0000 7 8 3.4449 3.6667 -0.0005 8 16 3.1109 4.1885 1.3897 9 8 2.1453 5.2054 1.1597 10 8 2.7838 3.0222 2.1326 11 6 4.6644 4.9094 1.9880 12 6 4.4560 5.4744 3.3945 13 1 3.5386 6.0559 3.4853 14 6 4.6380 4.4321 4.5103 15 6 6.1289 4.8196 4.5176 16 8 6.9230 4.0571 3.6066 17 6 8.1940 4.6411 3.3141 18 6 6.7383 4.8930 5.9191 19 9 5.7675 5.3289 6.8274 20 9 7.1942 3.6254 6.2965 21 9 7.8102 5.7920 5.9151 22 6 5.6953 6.1865 3.9620 23 6 5.5624 2.5849 0.0000 24 6 6.3057 1.4217 0.0000 25 6 7.8110 1.4948 -0.0005 26 8 8.2537 2.1904 -1.1675 27 14 8.5166 -0.2295 0.0004 28 6 5.6763 0.1871 0.0006 29 6 4.3010 0.1080 0.0016 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 5.4350 4.1390 2.0168 34 1 4.9757 5.7099 1.3167 35 1 4.1165 4.6851 5.4334 36 1 4.4531 3.4081 4.1856 37 1 8.7131 4.0303 2.5754 38 1 8.0495 5.6460 2.9176 39 1 8.7889 4.6923 4.2259 40 1 6.3636 6.5778 3.1949 41 1 5.4624 6.9193 4.7345 42 1 6.0605 3.5432 -0.0008 43 1 8.1493 2.0259 0.8893 44 1 7.9880 1.7734 -1.9986 45 1 10.0004 -0.1710 0.0005 46 1 8.0379 -0.9734 1.1931 47 1 6.2667 -0.7172 0.0010 48 1 3.8148 -0.8562 0.0066 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16464680_17541816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:09:02 Heat of formation + Delta-G solvation = -334.677421 kcal Electronic energy + Delta-G solvation = -46032.179407 eV Core-core repulsion = 39734.515785 eV Total energy + Delta-G solvation = -6297.663622 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 441.097 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -51.30128 -48.83554 -48.76950 -42.79299 -41.52346 -41.17591 -39.91453 -38.50182 -37.67084 -37.46864 -37.44441 -37.27151 -33.32702 -32.13394 -31.65384 -29.13785 -28.45464 -27.92824 -27.33129 -26.86627 -25.05603 -24.02551 -23.66665 -22.82489 -21.51821 -20.67934 -20.00088 -19.65334 -19.55886 -19.40565 -19.29667 -18.83482 -18.62846 -18.16440 -17.92245 -17.51412 -17.31166 -16.83539 -16.61445 -16.46321 -16.22715 -16.01228 -15.91878 -15.71842 -15.64827 -15.49692 -15.31638 -15.19162 -15.04114 -14.95806 -14.90673 -14.76647 -14.68495 -14.58400 -14.42080 -14.21707 -14.17311 -13.57587 -13.49375 -13.43526 -13.33710 -13.30715 -13.24882 -13.16723 -13.01632 -12.93583 -12.41393 -12.27127 -12.25971 -12.18639 -11.94655 -11.90145 -11.76942 -11.50323 -10.88527 -10.62602 -10.33426 -10.22760 -4.93892 -1.37147 -0.69744 -0.15735 0.83624 1.17643 1.31011 1.44424 1.46787 1.70589 2.00239 2.04765 2.22611 2.42136 2.48649 2.54770 2.76609 2.77444 3.07050 3.13107 3.18712 3.25048 3.32170 3.44230 3.48609 3.52116 3.68806 3.82135 3.87101 3.92771 4.14966 4.22247 4.23503 4.25663 4.29383 4.34698 4.36584 4.41498 4.46715 4.50810 4.60241 4.61590 4.67390 4.69666 4.73467 4.79752 4.81139 4.83329 4.98877 5.11874 5.39542 5.64231 6.42251 6.77524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.507 3.493 4 O -0.536 6.536 5 C -0.128 4.128 6 C 0.104 3.896 7 O -0.662 6.662 8 S 2.590 3.410 9 O -0.966 6.966 10 O -0.968 6.968 11 C -0.626 4.626 12 C -0.100 4.100 13 H 0.118 0.882 14 C -0.136 4.136 15 C 0.041 3.959 16 O -0.341 6.341 17 C -0.002 4.002 18 C 0.434 3.566 19 F -0.177 7.177 20 F -0.186 7.186 21 F -0.182 7.182 22 C -0.127 4.127 23 C -0.112 4.112 24 C -0.057 4.057 25 C -0.076 4.076 26 O -0.546 6.546 27 Si 0.771 3.229 28 C -0.102 4.102 29 C -0.029 4.029 30 H 0.064 0.936 31 H 0.143 0.857 32 H 0.056 0.944 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.174 0.826 43 H 0.130 0.870 44 H 0.399 0.601 45 H -0.299 1.299 46 H -0.275 1.275 47 H 0.179 0.821 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.485 -4.642 -3.841 8.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.353 3.647 4 O -0.427 6.427 5 C -0.131 4.131 6 C 0.062 3.938 7 O -0.620 6.620 8 S 2.690 3.310 9 O -0.964 6.964 10 O -0.967 6.967 11 C -0.755 4.755 12 C -0.120 4.120 13 H 0.136 0.864 14 C -0.173 4.173 15 C -0.002 4.002 16 O -0.259 6.259 17 C -0.097 4.097 18 C 0.379 3.621 19 F -0.158 7.158 20 F -0.168 7.168 21 F -0.163 7.163 22 C -0.165 4.165 23 C -0.132 4.132 24 C -0.058 4.058 25 C -0.185 4.185 26 O -0.355 6.355 27 Si 0.676 3.324 28 C -0.120 4.120 29 C -0.047 4.047 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.075 0.925 33 H 0.183 0.817 34 H 0.197 0.803 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.191 0.809 43 H 0.147 0.853 44 H 0.250 0.750 45 H -0.227 1.227 46 H -0.201 1.201 47 H 0.196 0.804 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.142 -4.812 -3.261 8.457 hybrid contribution -0.068 1.377 1.011 1.710 sum 6.073 -3.435 -2.251 7.332 Atomic orbital electron populations 1.23653 0.74034 1.06328 1.02545 1.86487 1.25334 1.30654 1.83697 1.21250 0.89498 0.81994 0.71969 1.90827 1.67634 1.37347 1.46910 1.19493 0.89655 0.94753 1.09240 1.18374 0.90038 0.80588 1.04827 1.85682 1.73951 1.45006 1.57347 1.05563 0.77850 0.74729 0.72905 1.93576 1.58614 1.61162 1.83030 1.93572 1.83561 1.47245 1.72295 1.30773 1.21678 1.15807 1.07270 1.21815 1.02123 0.98316 0.89717 0.86414 1.23660 0.89719 1.02204 1.01737 1.24062 0.93178 0.98540 0.84385 1.88019 1.30009 1.47319 1.60587 1.23383 0.83159 1.01151 1.02010 1.21441 0.76655 0.73506 0.90486 1.93178 1.62849 1.89643 1.70169 1.93191 1.89583 1.41050 1.92950 1.93187 1.57667 1.68479 1.96984 1.23652 0.96321 0.93864 1.02655 1.21383 0.88732 1.02568 1.00482 1.20737 0.97596 0.92127 0.95291 1.25338 0.89778 1.10938 0.92496 1.86514 1.78191 1.54569 1.16177 0.93776 0.77308 0.74503 0.86779 1.21601 0.94166 0.98427 0.97812 1.21748 0.93806 0.97586 0.91553 0.91734 0.83903 0.92465 0.81686 0.80264 0.84872 0.88184 0.86353 0.90767 0.93659 0.86339 0.85568 0.80856 0.85327 0.75000 1.22663 1.20095 0.80411 0.80113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.04 10.57 113.37 1.20 1.24 16 2 O -0.35 -1.92 9.82 -56.65 -0.56 -2.48 16 3 C 0.51 5.61 7.18 70.23 0.50 6.12 16 4 O -0.54 -9.95 13.35 29.46 0.39 -9.55 16 5 C -0.13 -0.64 5.30 -20.02 -0.11 -0.74 16 6 C 0.10 0.46 4.81 22.86 0.11 0.57 16 7 O -0.66 -6.15 8.56 -55.70 -0.48 -6.63 16 8 S 2.59 23.74 4.42 -56.49 -0.25 23.49 16 9 O -0.97 -16.86 18.09 -118.57 -2.15 -19.00 16 10 O -0.97 -12.62 14.53 -115.86 -1.68 -14.31 16 11 C -0.63 1.74 5.06 71.98 0.36 2.11 16 12 C -0.10 0.31 3.83 -10.27 -0.04 0.27 16 13 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 14 C -0.14 0.16 6.92 31.21 0.22 0.38 16 15 C 0.04 -0.08 0.85 -10.17 -0.01 -0.09 16 16 O -0.34 0.90 8.34 -148.98 -1.24 -0.34 16 17 C 0.00 0.01 10.33 113.37 1.17 1.18 16 18 C 0.43 0.71 2.52 71.98 0.18 0.89 16 19 F -0.18 -0.40 15.82 44.97 0.71 0.31 16 20 F -0.19 -1.00 17.11 44.97 0.77 -0.24 16 21 F -0.18 -0.28 15.33 44.97 0.69 0.40 16 22 C -0.13 0.79 6.52 31.12 0.20 0.99 16 23 C -0.11 0.40 8.00 22.34 0.18 0.58 16 24 C -0.06 0.42 5.40 -19.83 -0.11 0.31 16 25 C -0.08 0.72 2.81 71.24 0.20 0.92 16 26 O -0.55 4.90 12.76 -148.98 -1.90 3.00 16 27 Si 0.77 -7.54 29.77 68.60 2.04 -5.49 16 28 C -0.10 0.89 8.64 22.24 0.19 1.08 16 29 C -0.03 0.12 9.61 22.53 0.22 0.34 16 30 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 31 H 0.14 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.17 -0.89 4.54 -2.39 -0.01 -0.90 16 34 H 0.18 -1.67 8.14 -2.39 -0.02 -1.69 16 35 H 0.13 -0.44 7.04 -2.39 -0.02 -0.46 16 36 H 0.10 0.07 7.91 -2.38 -0.02 0.05 16 37 H 0.12 -1.20 8.14 -2.39 -0.02 -1.22 16 38 H 0.07 -0.72 6.60 -2.39 -0.02 -0.74 16 39 H 0.04 -0.18 6.56 -2.39 -0.02 -0.20 16 40 H 0.12 -1.18 6.64 -2.39 -0.02 -1.20 16 41 H 0.13 -1.04 8.04 -2.39 -0.02 -1.06 16 42 H 0.17 -1.45 7.50 -2.91 -0.02 -1.47 16 43 H 0.13 -1.30 7.96 -2.38 -0.02 -1.32 16 44 H 0.40 -6.52 8.70 -74.06 -0.64 -7.16 16 45 H -0.30 0.34 7.11 99.48 0.71 1.05 16 46 H -0.27 1.50 7.11 99.48 0.71 2.21 16 47 H 0.18 -2.68 4.85 -2.91 -0.01 -2.69 16 48 H 0.18 -1.62 7.61 -2.92 -0.02 -1.64 16 Total: 0.00 -35.53 413.25 1.29 -34.24 By element: Atomic # 1 Polarization: -20.01 SS G_CDS: 0.46 Total: -19.54 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 4.47 Total: 16.14 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -7.61 Total: -49.31 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 2.17 Total: 0.48 kcal Atomic # 14 Polarization: -7.54 SS G_CDS: 2.04 Total: -5.49 kcal Atomic # 16 Polarization: 23.74 SS G_CDS: -0.25 Total: 23.49 kcal Total: -35.53 1.29 -34.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16464680_17541816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -300.434 kcal (2) G-P(sol) polarization free energy of solvation -35.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -335.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -334.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds