Wall clock time and date at job start Mon Mar 8 2021 14:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34752 * 117.00019 * 2 1 4 4 O 1.21508 * 120.00039 * 359.97438 * 3 2 1 5 5 C 1.47403 * 120.00210 * 179.97438 * 3 2 1 6 6 C 1.40190 * 120.19978 * 179.97438 * 5 3 2 7 7 O 1.35641 * 120.15027 * 0.02562 * 6 5 3 8 8 S 1.52199 * 113.99843 * 95.62171 * 7 6 5 9 9 O 1.42101 * 104.27819 * 191.17966 * 8 7 6 10 10 O 1.42092 * 104.27800 * 319.03968 * 8 7 6 11 11 C 1.81404 * 104.45016 * 75.11219 * 8 7 6 12 12 H 1.09004 * 112.84485 * 288.08358 * 11 8 7 13 13 C 1.53775 * 113.61756 * 59.27818 * 11 8 7 14 14 C 1.53785 * 87.08072 * 89.11845 * 13 11 8 15 15 H 1.09003 * 113.61317 * 270.88711 * 14 13 11 16 16 C 1.50700 * 113.61388 * 140.06308 * 14 13 11 17 17 C 1.38229 * 120.00430 * 299.72812 * 16 14 13 18 18 C 1.38236 * 120.00394 * 179.76499 * 17 16 14 19 19 C 1.38236 * 119.99281 * 0.48876 * 18 17 16 20 20 C 1.38234 * 120.00589 * 359.78971 * 19 18 17 21 21 C 1.38234 * 119.99635 * 120.00412 * 16 14 13 22 22 C 1.53783 * 113.61813 * 156.89038 * 11 8 7 23 23 C 1.38705 * 119.69421 * 179.77383 * 6 5 3 24 24 C 1.38055 * 120.08529 * 0.49931 * 23 6 5 25 25 C 1.50703 * 119.79898 * 179.76643 * 24 23 6 26 26 O 1.42904 * 109.46612 * 64.72685 * 25 24 23 27 27 Si 1.86292 * 109.47443 * 184.72731 * 25 24 23 28 28 C 1.38564 * 120.40473 * 359.50142 * 24 23 6 29 29 C 1.37761 * 120.30794 * 0.24174 * 28 24 23 30 30 H 1.09005 * 109.46998 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47298 * 300.00099 * 1 2 3 32 32 H 1.08999 * 109.46838 * 60.00502 * 1 2 3 33 33 H 1.09001 * 113.61828 * 203.66608 * 13 11 8 34 34 H 1.09004 * 113.61305 * 334.48870 * 13 11 8 35 35 H 1.08006 * 119.99592 * 0.02562 * 17 16 14 36 36 H 1.07992 * 120.00126 * 180.25311 * 18 17 16 37 37 H 1.08007 * 119.99865 * 179.76899 * 19 18 17 38 38 H 1.07995 * 120.00304 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.00377 * 359.97438 * 21 16 14 40 40 H 1.09007 * 113.60756 * 25.42973 * 22 11 8 41 41 H 1.08993 * 113.61438 * 156.33141 * 22 11 8 42 42 H 1.07998 * 119.95858 * 180.27252 * 23 6 5 43 43 H 1.08999 * 109.46918 * 304.73238 * 25 24 23 44 44 H 0.96705 * 113.99623 * 180.02562 * 26 25 24 45 45 H 1.48504 * 110.00091 * 300.00595 * 27 25 24 46 46 H 1.48500 * 110.00027 * 61.32153 * 27 25 24 47 47 H 1.07999 * 119.84508 * 180.27766 * 28 24 23 48 48 H 1.08001 * 120.04906 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.1765 2.5247 0.0000 7 8 3.4446 3.6668 -0.0005 8 16 3.2253 4.2621 1.3830 9 8 2.2399 5.2657 1.1805 10 8 2.9659 3.1372 2.2114 11 6 4.8202 5.0132 1.8106 12 1 5.5895 4.2742 2.0346 13 6 5.2766 6.0965 0.8192 14 6 4.5079 7.1052 1.6890 15 1 3.4642 7.2258 1.3988 16 6 5.2228 8.4204 1.8627 17 6 6.4719 8.4554 2.4538 18 6 7.1298 9.6613 2.6088 19 6 6.5341 10.8334 2.1818 20 6 5.2825 10.7991 1.5959 21 6 4.6270 9.5926 1.4362 22 6 4.7131 6.1293 2.8631 23 6 5.5622 2.5852 0.0053 24 6 6.3056 1.4219 0.0007 25 6 7.8109 1.4951 0.0012 26 8 8.2585 2.0878 1.2220 27 14 8.5163 -0.2224 -0.1505 28 6 5.6763 0.1874 0.0011 29 6 4.3010 0.1082 0.0012 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 6.3547 6.2571 0.8136 34 1 4.8615 5.9754 -0.1815 35 1 6.9356 7.5401 2.7908 36 1 8.1073 9.6881 3.0669 37 1 7.0464 11.7760 2.3062 38 1 4.8170 11.7148 1.2627 39 1 3.6493 9.5658 0.9780 40 1 3.8422 6.0353 3.5120 41 1 5.6374 6.2988 3.4154 42 1 6.0602 3.5434 0.0094 43 1 8.1454 2.1010 -0.8409 44 1 9.2198 2.1673 1.2914 45 1 8.0674 -1.0586 0.9918 46 1 8.0840 -0.8378 -1.4310 47 1 6.2668 -0.7169 0.0020 48 1 3.8148 -0.8562 0.0011 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16464680_17781816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:22:23 Heat of formation + Delta-G solvation = -115.406036 kcal Electronic energy + Delta-G solvation = -37547.202607 eV Core-core repulsion = 32628.724482 eV Total energy + Delta-G solvation = -4918.478125 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.110 amu Computer time = 6.62 seconds Orbital eigenvalues (eV) -42.72077 -41.18066 -41.00187 -39.94054 -38.98180 -38.08248 -37.74267 -37.41189 -37.06199 -33.55367 -32.31149 -31.99806 -31.78454 -29.16909 -27.58739 -27.14721 -26.92657 -25.01460 -24.00992 -23.77500 -22.96523 -22.68507 -21.40633 -20.70443 -19.45799 -19.10263 -18.84271 -18.66917 -18.51431 -18.08009 -17.88917 -17.32333 -17.08728 -16.78229 -16.60972 -16.23189 -15.95203 -15.75177 -15.57897 -15.27576 -15.04522 -14.78688 -14.66543 -14.42992 -14.42009 -14.30094 -14.22952 -13.99788 -13.98733 -13.72541 -13.42816 -13.34154 -13.27107 -13.15115 -13.10835 -13.05260 -12.80479 -12.64861 -12.46373 -12.18254 -12.00857 -11.90125 -11.79218 -11.61199 -11.52179 -11.33177 -10.74896 -10.46827 -10.34049 -9.82099 -9.60439 -5.19619 -1.24260 -0.71193 -0.26444 0.40285 0.50012 0.88917 1.03830 1.23985 1.44311 1.50187 1.72193 2.14099 2.52071 2.76727 2.81964 2.87348 2.95653 3.15164 3.20017 3.36844 3.38774 3.51159 3.62072 3.67046 3.67651 3.79620 3.95975 4.01048 4.08610 4.10960 4.18736 4.23490 4.27894 4.29398 4.35709 4.40056 4.42053 4.45667 4.50775 4.56414 4.57904 4.62341 4.64772 4.68273 4.75898 4.84037 5.05622 5.08742 5.16907 5.20767 5.27145 5.56552 5.63640 5.71258 6.09237 6.30048 6.61377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.512 3.488 4 O -0.487 6.487 5 C -0.099 4.099 6 C 0.139 3.861 7 O -0.646 6.646 8 S 2.613 3.387 9 O -0.908 6.908 10 O -0.944 6.944 11 C -0.669 4.669 12 H 0.153 0.847 13 C -0.089 4.089 14 C -0.092 4.092 15 H 0.123 0.877 16 C -0.072 4.072 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.086 4.086 23 C -0.121 4.121 24 C -0.019 4.019 25 C -0.082 4.082 26 O -0.543 6.543 27 Si 0.689 3.311 28 C -0.122 4.122 29 C -0.034 4.034 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.157 0.843 43 H 0.087 0.913 44 H 0.389 0.611 45 H -0.244 1.244 46 H -0.249 1.249 47 H 0.141 0.859 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.076 -2.886 -1.458 9.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.355 3.645 4 O -0.375 6.375 5 C -0.102 4.102 6 C 0.097 3.903 7 O -0.603 6.603 8 S 2.706 3.294 9 O -0.906 6.906 10 O -0.943 6.943 11 C -0.775 4.775 12 H 0.171 0.829 13 C -0.127 4.127 14 C -0.110 4.110 15 H 0.141 0.859 16 C -0.072 4.072 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.140 4.140 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.141 4.141 24 C -0.020 4.020 25 C -0.192 4.192 26 O -0.350 6.350 27 Si 0.589 3.411 28 C -0.140 4.140 29 C -0.052 4.052 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.099 0.901 41 H 0.129 0.871 42 H 0.175 0.825 43 H 0.104 0.896 44 H 0.237 0.763 45 H -0.168 1.168 46 H -0.173 1.173 47 H 0.158 0.842 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.238 -3.510 -1.548 8.192 hybrid contribution -0.064 0.794 0.038 0.798 sum 7.174 -2.715 -1.511 7.818 Atomic orbital electron populations 1.23419 0.74808 1.04342 1.03271 1.86492 1.24474 1.31584 1.84191 1.20628 0.88242 0.82205 0.73401 1.90884 1.66388 1.35920 1.44322 1.19270 0.90826 0.93055 1.07092 1.17913 0.88841 0.81374 1.02204 1.85714 1.73201 1.43114 1.58315 1.05118 0.76249 0.75094 0.72927 1.93627 1.53950 1.60556 1.82484 1.93638 1.83603 1.48752 1.68275 1.32726 1.24706 1.10060 1.09967 0.82905 1.22689 1.02778 0.90975 0.96270 1.22015 1.01249 0.91378 0.96346 0.85860 1.19527 0.94748 0.93897 0.98982 1.21013 0.94735 0.98136 0.99721 1.21159 0.99965 0.92551 0.99923 1.21222 0.95637 0.98405 0.98729 1.21208 0.95257 0.97958 0.99072 1.21154 1.00154 0.92015 0.99707 1.22708 1.04560 0.90468 0.94668 1.21231 0.90222 1.01021 1.01593 1.19466 0.94551 0.92206 0.95755 1.24816 0.92366 1.11371 0.90683 1.86468 1.28119 1.84146 1.36295 0.94862 0.90791 0.74342 0.81148 1.21135 0.94873 0.97289 1.00673 1.21429 0.92969 0.98093 0.92740 0.87353 0.91251 0.91349 0.87394 0.89699 0.85971 0.85940 0.85992 0.85838 0.85686 0.90084 0.87140 0.82501 0.89552 0.76265 1.16829 1.17301 0.84151 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 10.57 101.05 1.07 1.10 16 2 O -0.35 -1.15 9.82 -40.63 -0.40 -1.54 16 3 C 0.51 2.96 7.47 34.46 0.26 3.22 16 4 O -0.49 -4.21 13.91 -28.02 -0.39 -4.60 16 5 C -0.10 -0.39 5.42 -104.86 -0.57 -0.96 16 6 C 0.14 0.51 4.72 -38.68 -0.18 0.33 16 7 O -0.65 -3.27 8.35 -54.06 -0.45 -3.72 16 8 S 2.61 13.56 4.41 -107.50 -0.47 13.08 16 9 O -0.91 -7.04 16.30 -67.04 -1.09 -8.13 16 10 O -0.94 -7.08 15.58 -68.50 -1.07 -8.15 16 11 C -0.67 -0.37 3.31 -25.92 -0.09 -0.46 16 12 H 0.15 -0.21 7.16 -51.93 -0.37 -0.58 16 13 C -0.09 0.04 6.78 -25.92 -0.18 -0.14 16 14 C -0.09 -0.10 3.58 -90.81 -0.32 -0.43 16 15 H 0.12 0.27 6.68 -51.93 -0.35 -0.08 16 16 C -0.07 -0.09 5.29 -104.63 -0.55 -0.65 16 17 C -0.12 -0.05 8.63 -39.59 -0.34 -0.39 16 18 C -0.12 -0.05 10.05 -39.58 -0.40 -0.45 16 19 C -0.12 -0.09 10.05 -39.58 -0.40 -0.48 16 20 C -0.12 -0.12 10.05 -39.58 -0.40 -0.52 16 21 C -0.11 -0.18 9.71 -39.58 -0.38 -0.56 16 22 C -0.09 -0.02 7.06 -25.78 -0.18 -0.21 16 23 C -0.12 -0.08 8.23 -39.48 -0.33 -0.40 16 24 C -0.02 0.00 5.39 -104.57 -0.56 -0.56 16 25 C -0.08 0.26 2.78 36.01 0.10 0.36 16 26 O -0.54 1.72 12.80 -35.23 -0.45 1.27 16 27 Si 0.69 -2.69 29.83 -169.99 -5.07 -7.76 16 28 C -0.12 0.02 8.64 -39.64 -0.34 -0.32 16 29 C -0.03 -0.03 9.61 -39.18 -0.38 -0.40 16 30 H 0.11 -0.25 8.14 -51.93 -0.42 -0.67 16 31 H 0.07 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.11 -0.24 7.73 -51.93 -0.40 -0.64 16 34 H 0.08 -0.07 8.08 -51.93 -0.42 -0.49 16 35 H 0.12 -0.18 6.65 -52.48 -0.35 -0.53 16 36 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 37 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 38 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 39 H 0.13 0.07 8.05 -52.48 -0.42 -0.35 16 40 H 0.08 0.01 8.10 -51.93 -0.42 -0.41 16 41 H 0.11 -0.17 6.31 -51.93 -0.33 -0.50 16 42 H 0.16 -0.30 6.74 -52.49 -0.35 -0.66 16 43 H 0.09 -0.45 7.96 -51.93 -0.41 -0.86 16 44 H 0.39 -3.09 8.74 45.56 0.40 -2.69 16 45 H -0.24 0.24 7.04 56.52 0.40 0.64 16 46 H -0.25 0.40 7.11 56.52 0.40 0.81 16 47 H 0.14 -0.25 4.83 -52.49 -0.25 -0.51 16 48 H 0.16 -0.27 7.61 -52.49 -0.40 -0.67 16 LS Contribution 405.73 15.07 6.11 6.11 Total: 0.00 -12.58 405.73 -13.28 -25.86 By element: Atomic # 1 Polarization: -4.68 SS G_CDS: -5.82 Total: -10.50 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -4.17 Total: -1.91 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -3.85 Total: -24.88 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: -5.07 Total: -7.76 kcal Atomic # 16 Polarization: 13.56 SS G_CDS: -0.47 Total: 13.08 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -12.58 -13.28 -25.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16464680_17781816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.549 kcal (2) G-P(sol) polarization free energy of solvation -12.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.62 seconds