Wall clock time and date at job start Mon Mar 8 2021 14:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34752 * 117.00019 * 2 1 4 4 O 1.21508 * 120.00039 * 359.97438 * 3 2 1 5 5 C 1.47403 * 120.00210 * 179.97438 * 3 2 1 6 6 C 1.40190 * 120.19978 * 179.97438 * 5 3 2 7 7 O 1.35641 * 120.15027 * 0.02562 * 6 5 3 8 8 S 1.52199 * 113.99843 * 95.62171 * 7 6 5 9 9 O 1.42101 * 104.27819 * 191.17966 * 8 7 6 10 10 O 1.42092 * 104.27800 * 319.03968 * 8 7 6 11 11 C 1.81404 * 104.45016 * 75.11219 * 8 7 6 12 12 H 1.09004 * 112.84485 * 288.08358 * 11 8 7 13 13 C 1.53775 * 113.61756 * 59.27818 * 11 8 7 14 14 C 1.53785 * 87.08072 * 89.11845 * 13 11 8 15 15 H 1.09003 * 113.61317 * 270.88711 * 14 13 11 16 16 C 1.50700 * 113.61388 * 140.06308 * 14 13 11 17 17 C 1.38229 * 120.00430 * 299.72812 * 16 14 13 18 18 C 1.38236 * 120.00394 * 179.76499 * 17 16 14 19 19 C 1.38236 * 119.99281 * 0.48876 * 18 17 16 20 20 C 1.38234 * 120.00589 * 359.78971 * 19 18 17 21 21 C 1.38234 * 119.99635 * 120.00412 * 16 14 13 22 22 C 1.53783 * 113.61813 * 156.89038 * 11 8 7 23 23 C 1.38705 * 119.69421 * 179.77383 * 6 5 3 24 24 C 1.38055 * 120.08529 * 0.49931 * 23 6 5 25 25 C 1.50703 * 119.79898 * 179.76643 * 24 23 6 26 26 O 1.42904 * 109.46612 * 64.72685 * 25 24 23 27 27 Si 1.86292 * 109.47443 * 184.72731 * 25 24 23 28 28 C 1.38564 * 120.40473 * 359.50142 * 24 23 6 29 29 C 1.37761 * 120.30794 * 0.24174 * 28 24 23 30 30 H 1.09005 * 109.46998 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47298 * 300.00099 * 1 2 3 32 32 H 1.08999 * 109.46838 * 60.00502 * 1 2 3 33 33 H 1.09001 * 113.61828 * 203.66608 * 13 11 8 34 34 H 1.09004 * 113.61305 * 334.48870 * 13 11 8 35 35 H 1.08006 * 119.99592 * 0.02562 * 17 16 14 36 36 H 1.07992 * 120.00126 * 180.25311 * 18 17 16 37 37 H 1.08007 * 119.99865 * 179.76899 * 19 18 17 38 38 H 1.07995 * 120.00304 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.00377 * 359.97438 * 21 16 14 40 40 H 1.09007 * 113.60756 * 25.42973 * 22 11 8 41 41 H 1.08993 * 113.61438 * 156.33141 * 22 11 8 42 42 H 1.07998 * 119.95858 * 180.27252 * 23 6 5 43 43 H 1.08999 * 109.46918 * 304.73238 * 25 24 23 44 44 H 0.96705 * 113.99623 * 180.02562 * 26 25 24 45 45 H 1.48504 * 110.00091 * 300.00595 * 27 25 24 46 46 H 1.48500 * 110.00027 * 61.32153 * 27 25 24 47 47 H 1.07999 * 119.84508 * 180.27766 * 28 24 23 48 48 H 1.08001 * 120.04906 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.1765 2.5247 0.0000 7 8 3.4446 3.6668 -0.0005 8 16 3.2253 4.2621 1.3830 9 8 2.2399 5.2657 1.1805 10 8 2.9659 3.1372 2.2114 11 6 4.8202 5.0132 1.8106 12 1 5.5895 4.2742 2.0346 13 6 5.2766 6.0965 0.8192 14 6 4.5079 7.1052 1.6890 15 1 3.4642 7.2258 1.3988 16 6 5.2228 8.4204 1.8627 17 6 6.4719 8.4554 2.4538 18 6 7.1298 9.6613 2.6088 19 6 6.5341 10.8334 2.1818 20 6 5.2825 10.7991 1.5959 21 6 4.6270 9.5926 1.4362 22 6 4.7131 6.1293 2.8631 23 6 5.5622 2.5852 0.0053 24 6 6.3056 1.4219 0.0007 25 6 7.8109 1.4951 0.0012 26 8 8.2585 2.0878 1.2220 27 14 8.5163 -0.2224 -0.1505 28 6 5.6763 0.1874 0.0011 29 6 4.3010 0.1082 0.0012 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 6.3547 6.2571 0.8136 34 1 4.8615 5.9754 -0.1815 35 1 6.9356 7.5401 2.7908 36 1 8.1073 9.6881 3.0669 37 1 7.0464 11.7760 2.3062 38 1 4.8170 11.7148 1.2627 39 1 3.6493 9.5658 0.9780 40 1 3.8422 6.0353 3.5120 41 1 5.6374 6.2988 3.4154 42 1 6.0602 3.5434 0.0094 43 1 8.1454 2.1010 -0.8409 44 1 9.2198 2.1673 1.2914 45 1 8.0674 -1.0586 0.9918 46 1 8.0840 -0.8378 -1.4310 47 1 6.2668 -0.7169 0.0020 48 1 3.8148 -0.8562 0.0011 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16464680_17781816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:22:18 Heat of formation + Delta-G solvation = -116.423347 kcal Electronic energy + Delta-G solvation = -37547.246721 eV Core-core repulsion = 32628.724482 eV Total energy + Delta-G solvation = -4918.522239 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.110 amu Computer time = 3.34 seconds Orbital eigenvalues (eV) -42.91235 -41.33265 -41.19098 -39.97182 -39.05323 -38.42301 -37.79057 -37.51617 -37.43850 -33.57423 -32.33207 -32.04550 -31.77542 -29.26371 -27.57412 -27.13385 -26.98361 -25.12290 -24.01427 -23.79145 -23.01491 -22.91584 -21.53389 -20.80398 -19.66447 -19.37626 -18.96857 -18.77040 -18.37284 -18.16082 -18.01102 -17.63414 -17.16574 -16.76919 -16.69263 -16.26656 -16.10066 -15.74793 -15.52603 -15.27691 -15.10022 -14.85669 -14.80901 -14.51647 -14.36646 -14.34577 -14.26726 -14.19327 -14.02815 -13.69518 -13.66506 -13.61094 -13.49413 -13.32085 -13.25230 -13.21535 -12.82046 -12.53673 -12.51075 -12.06345 -12.04740 -12.01329 -11.92145 -11.87885 -11.54033 -11.40248 -10.64106 -10.47609 -10.22710 -9.82634 -9.61287 -4.87061 -1.47082 -0.85149 -0.34160 0.39387 0.49299 0.69905 1.00780 1.29416 1.31330 1.73835 2.01034 2.03354 2.30609 2.61578 2.75057 2.85955 3.00950 3.05042 3.15228 3.30812 3.44392 3.51209 3.56156 3.64345 3.72209 3.95538 3.98524 4.06332 4.12516 4.15110 4.16569 4.18909 4.28658 4.33407 4.36313 4.42701 4.46660 4.48869 4.53464 4.58555 4.59730 4.60193 4.62458 4.67664 4.76584 4.83409 4.97345 5.07146 5.11020 5.17483 5.19934 5.57265 5.63950 5.69856 6.11057 6.27969 6.92531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.347 6.347 3 C 0.504 3.496 4 O -0.530 6.530 5 C -0.134 4.134 6 C 0.114 3.886 7 O -0.656 6.656 8 S 2.598 3.402 9 O -0.954 6.954 10 O -0.981 6.981 11 C -0.639 4.639 12 H 0.183 0.817 13 C -0.083 4.083 14 C -0.103 4.103 15 H 0.100 0.900 16 C -0.078 4.078 17 C -0.120 4.120 18 C -0.123 4.123 19 C -0.133 4.133 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.089 4.089 23 C -0.116 4.116 24 C -0.020 4.020 25 C -0.085 4.085 26 O -0.557 6.557 27 Si 0.768 3.232 28 C -0.125 4.125 29 C -0.029 4.029 30 H 0.145 0.855 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.141 0.859 34 H 0.085 0.915 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.185 0.815 43 H 0.118 0.882 44 H 0.411 0.589 45 H -0.286 1.286 46 H -0.281 1.281 47 H 0.156 0.844 48 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.185 -3.256 -1.231 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.263 6.263 3 C 0.350 3.650 4 O -0.421 6.421 5 C -0.137 4.137 6 C 0.071 3.929 7 O -0.615 6.615 8 S 2.697 3.303 9 O -0.953 6.953 10 O -0.979 6.979 11 C -0.750 4.750 12 H 0.201 0.799 13 C -0.121 4.121 14 C -0.121 4.121 15 H 0.118 0.882 16 C -0.078 4.078 17 C -0.137 4.137 18 C -0.141 4.141 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.153 4.153 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.020 4.020 25 C -0.195 4.195 26 O -0.368 6.368 27 Si 0.673 3.327 28 C -0.143 4.143 29 C -0.046 4.046 30 H 0.163 0.837 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.159 0.841 34 H 0.104 0.896 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.093 0.907 41 H 0.159 0.841 42 H 0.202 0.798 43 H 0.135 0.865 44 H 0.263 0.737 45 H -0.214 1.214 46 H -0.207 1.207 47 H 0.173 0.827 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 11.325 -3.899 -1.332 12.051 hybrid contribution -1.271 0.851 -0.026 1.530 sum 10.053 -3.049 -1.358 10.593 Atomic orbital electron populations 1.23702 0.73721 1.06520 1.02730 1.86494 1.25635 1.30525 1.83652 1.21187 0.89309 0.82158 0.72313 1.90853 1.67438 1.37189 1.46643 1.19470 0.89985 0.94552 1.09684 1.18388 0.90070 0.80795 1.03614 1.85668 1.74099 1.43834 1.57850 1.05325 0.77969 0.74428 0.72592 1.93562 1.57371 1.61226 1.83095 1.93576 1.85171 1.50159 1.69027 1.32333 1.21107 1.10707 1.10805 0.79927 1.22868 1.04394 0.89065 0.95808 1.22001 1.00459 0.92145 0.97495 0.88209 1.19597 0.95351 0.93511 0.99352 1.21276 0.94138 0.99244 0.99073 1.21482 1.00789 0.92341 0.99484 1.21496 0.95525 0.99487 0.98579 1.21399 0.95799 0.98119 0.99435 1.21316 1.00476 0.92848 1.00692 1.22928 1.05815 0.89484 0.94507 1.21543 0.88741 1.02683 1.00619 1.19981 0.96559 0.91660 0.93805 1.24916 0.89954 1.12567 0.92013 1.86418 1.30424 1.84002 1.35942 0.93938 0.89418 0.72274 0.77104 1.21423 0.94552 0.98325 0.99958 1.21657 0.93460 0.97866 0.91660 0.83719 0.92287 0.91524 0.84052 0.89599 0.83484 0.83881 0.84610 0.85066 0.86150 0.90716 0.84080 0.79755 0.86482 0.73667 1.21352 1.20712 0.82653 0.80308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 10.57 113.37 1.20 1.29 16 2 O -0.35 -2.99 9.82 -56.63 -0.56 -3.55 16 3 C 0.50 7.37 7.47 70.24 0.52 7.90 16 4 O -0.53 -11.41 13.91 28.18 0.39 -11.01 16 5 C -0.13 -1.30 5.42 -20.02 -0.11 -1.41 16 6 C 0.11 0.97 4.72 22.86 0.11 1.08 16 7 O -0.66 -8.25 8.35 -55.66 -0.46 -8.71 16 8 S 2.60 33.25 4.41 -56.49 -0.25 33.00 16 9 O -0.95 -18.72 16.30 -118.57 -1.93 -20.65 16 10 O -0.98 -17.74 15.58 -117.17 -1.83 -19.57 16 11 C -0.64 -0.19 3.31 31.12 0.10 -0.09 16 12 H 0.18 -1.00 7.16 -2.39 -0.02 -1.02 16 13 C -0.08 0.19 6.78 31.12 0.21 0.40 16 14 C -0.10 -0.25 3.58 -10.92 -0.04 -0.29 16 15 H 0.10 0.71 6.68 -2.39 -0.02 0.70 16 16 C -0.08 -0.18 5.29 -19.87 -0.11 -0.28 16 17 C -0.12 0.16 8.63 22.27 0.19 0.35 16 18 C -0.12 0.14 10.05 22.27 0.22 0.36 16 19 C -0.13 -0.08 10.05 22.27 0.22 0.15 16 20 C -0.13 -0.33 10.05 22.27 0.22 -0.11 16 21 C -0.14 -0.57 9.71 22.27 0.22 -0.36 16 22 C -0.09 0.03 7.06 31.21 0.22 0.25 16 23 C -0.12 -0.01 8.23 22.34 0.18 0.17 16 24 C -0.02 0.04 5.39 -19.83 -0.11 -0.06 16 25 C -0.08 0.81 2.78 71.24 0.20 1.01 16 26 O -0.56 5.63 12.80 -148.98 -1.91 3.72 16 27 Si 0.77 -7.51 29.83 68.60 2.05 -5.47 16 28 C -0.12 0.13 8.64 22.23 0.19 0.32 16 29 C -0.03 -0.06 9.61 22.53 0.22 0.16 16 30 H 0.14 -0.63 8.14 -2.38 -0.02 -0.65 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.14 -1.19 7.73 -2.39 -0.02 -1.21 16 34 H 0.09 -0.16 8.08 -2.38 -0.02 -0.18 16 35 H 0.15 -1.02 6.65 -2.91 -0.02 -1.04 16 36 H 0.14 -0.81 8.06 -2.91 -0.02 -0.83 16 37 H 0.14 -0.41 8.06 -2.91 -0.02 -0.43 16 38 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 39 H 0.12 0.45 8.05 -2.91 -0.02 0.43 16 40 H 0.07 0.09 8.10 -2.38 -0.02 0.07 16 41 H 0.14 -0.88 6.31 -2.39 -0.02 -0.89 16 42 H 0.19 -1.23 6.74 -2.91 -0.02 -1.25 16 43 H 0.12 -1.75 7.96 -2.39 -0.02 -1.77 16 44 H 0.41 -8.25 8.74 -74.05 -0.65 -8.89 16 45 H -0.29 0.78 7.04 99.48 0.70 1.48 16 46 H -0.28 1.25 7.11 99.48 0.71 1.96 16 47 H 0.16 -0.72 4.83 -2.91 -0.01 -0.73 16 48 H 0.18 -0.51 7.61 -2.91 -0.02 -0.54 16 Total: 0.00 -35.50 405.73 -0.21 -35.71 By element: Atomic # 1 Polarization: -14.71 SS G_CDS: 0.41 Total: -14.30 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 3.88 Total: 10.84 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -6.29 Total: -59.78 kcal Atomic # 14 Polarization: -7.51 SS G_CDS: 2.05 Total: -5.47 kcal Atomic # 16 Polarization: 33.25 SS G_CDS: -0.25 Total: 33.00 kcal Total: -35.50 -0.21 -35.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16464680_17781816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.713 kcal (2) G-P(sol) polarization free energy of solvation -35.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds