Wall clock time and date at job start Mon Mar 8 2021 11:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34750 * 116.99964 * 2 1 4 4 O 1.21508 * 120.00052 * 359.97438 * 3 2 1 5 5 C 1.47404 * 119.99909 * 180.02562 * 3 2 1 6 6 C 1.39720 * 120.19564 * 0.27007 * 5 3 2 7 7 C 1.37810 * 119.90065 * 179.97438 * 6 5 3 8 8 C 1.38519 * 120.30699 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.79767 * 179.97438 * 8 7 6 10 10 O 1.42904 * 109.47263 * 244.99828 * 9 8 7 11 11 Si 1.86304 * 109.47202 * 5.00014 * 9 8 7 12 12 H 1.48498 * 109.46784 * 179.97438 * 11 9 8 13 13 H 1.48499 * 109.47116 * 299.99990 * 11 9 8 14 14 H 1.48500 * 109.47108 * 59.99900 * 11 9 8 15 15 C 1.38099 * 120.40579 * 359.97438 * 8 7 6 16 16 C 1.38663 * 120.08360 * 359.74379 * 15 8 7 17 17 O 1.35646 * 120.15143 * 179.97438 * 16 15 8 18 18 S 1.52200 * 113.99743 * 90.00272 * 17 16 15 19 19 O 1.42098 * 106.40505 * 188.54006 * 18 17 16 20 20 O 1.42102 * 106.40039 * 321.46210 * 18 17 16 21 21 C 1.76195 * 107.22090 * 74.99886 * 18 17 16 22 22 C 1.38241 * 120.00498 * 270.27526 * 21 18 17 23 23 C 1.38228 * 120.00386 * 179.97438 * 22 21 18 24 24 C 1.38231 * 120.00232 * 359.97438 * 23 22 21 25 Xx 1.80993 * 120.00207 * 179.97438 * 24 23 22 26 25 F 5.98300 * 47.43608 * 264.25930 * 2 1 3 27 26 F 1.61002 * 90.00172 * 134.99688 * 25 24 23 28 27 F 1.60997 * 90.00085 * 314.99510 * 25 24 23 29 28 F 1.61003 * 90.00139 * 224.99329 * 25 24 23 30 29 F 1.60998 * 90.00118 * 44.99499 * 25 24 23 31 30 C 1.38240 * 119.99903 * 359.94761 * 24 23 22 32 31 C 1.38237 * 119.99938 * 359.86087 * 31 24 23 33 32 H 1.09001 * 109.47157 * 60.00161 * 1 2 3 34 33 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 35 34 H 1.09000 * 109.47070 * 300.00320 * 1 2 3 36 35 H 1.07998 * 120.05068 * 359.95915 * 6 5 3 37 36 H 1.07995 * 119.85136 * 180.02562 * 7 6 5 38 37 H 1.09001 * 109.47340 * 125.00038 * 9 8 7 39 38 H 0.96695 * 113.99847 * 179.97438 * 10 9 8 40 39 H 1.08004 * 119.95765 * 179.97438 * 15 8 7 41 40 H 1.08004 * 119.99065 * 359.97438 * 22 21 18 42 41 H 1.08005 * 120.00157 * 179.97438 * 23 22 21 43 42 H 1.07998 * 120.00322 * 180.02562 * 31 24 23 44 43 H 1.07996 * 120.00100 * 179.97438 * 32 31 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5358 1.2778 -0.0006 6 6 4.3008 0.1086 -0.0068 7 6 5.6766 0.1878 -0.0078 8 6 6.3057 1.4219 -0.0022 9 6 7.8110 1.4951 -0.0028 10 8 8.2599 2.0810 1.2209 11 14 8.5162 -0.2217 -0.1648 12 1 9.9994 -0.1494 -0.1660 13 1 8.0615 -1.0535 0.9783 14 1 8.0497 -0.8305 -1.4364 15 6 5.5621 2.5855 0.0040 16 6 4.1768 2.5251 -0.0008 17 8 3.4450 3.6672 0.0058 18 16 3.1153 4.1991 -1.3815 19 8 2.5327 5.4812 -1.1918 20 8 4.2704 3.9807 -2.1799 21 6 1.8488 3.1708 -2.0471 22 6 2.1842 2.0455 -2.7767 23 6 1.1906 1.2385 -3.2984 24 6 -0.1385 1.5563 -3.0902 25 9 -2.5949 -0.4408 -4.3845 26 9 -2.2295 0.5659 -2.3725 27 9 -0.6496 0.4340 -5.1752 28 9 -2.2325 1.8056 -4.2822 29 9 -0.6466 -0.8058 -3.2654 30 6 -0.4740 2.6806 -2.3592 31 6 0.5197 3.4855 -1.8341 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 3.8146 -0.8558 -0.0106 36 1 6.2671 -0.7164 -0.0131 37 1 8.1447 2.1056 -0.8418 38 1 9.2212 2.1593 1.2899 39 1 6.0601 3.5438 0.0088 40 1 3.2226 1.7970 -2.9391 41 1 1.4526 0.3596 -3.8688 42 1 -1.5123 2.9287 -2.1961 43 1 0.2576 4.3641 -1.2634 RHF calculation, no. of doubly occupied orbitals= 78 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16464680_8643202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:41:24 Heat of formation + Delta-G solvation = 245.156149 kcal Electronic energy + Delta-G solvation = -46144.520528 eV Core-core repulsion = 39420.967975 eV Total energy + Delta-G solvation = -6723.552552 eV No. of doubly occupied orbitals = 78 Molecular weight (most abundant/longest-lived isotopes) = 446.055 amu Computer time = 37.67 seconds Orbital eigenvalues (eV) -44.48580 -44.32012 -44.27536 -44.16764 -43.66480 -42.99514 -41.71500 -40.87980 -39.90655 -38.83070 -37.78502 -37.47774 -37.46743 -33.60014 -33.22170 -33.02880 -31.96958 -29.21334 -27.43905 -25.17059 -24.92849 -24.80152 -23.89094 -22.80598 -21.48985 -20.48483 -19.45108 -19.29104 -18.93388 -18.61055 -18.34658 -17.79916 -17.66288 -17.35625 -16.74003 -16.68991 -16.53356 -16.18368 -15.77299 -15.65764 -15.57945 -15.47886 -15.25384 -14.97749 -14.85856 -14.83316 -14.71805 -14.64047 -14.46389 -14.28690 -14.26756 -14.23364 -14.19031 -14.09243 -14.05616 -13.97614 -13.73418 -13.69547 -13.67593 -13.61602 -13.45603 -13.29186 -13.19900 -12.92745 -12.75628 -12.47366 -12.39675 -12.08655 -12.01243 -11.93919 -11.85005 -11.75172 -11.47460 -11.28699 -11.07743 -10.52233 -10.34542 -10.18481 -5.34402 -4.87590 -3.54347 -1.60936 -1.39695 -0.88730 -0.68296 -0.14205 0.77989 1.05874 1.18834 1.31789 1.35478 1.54829 1.63059 2.00686 2.09095 2.15095 2.35128 2.51191 2.62947 3.06735 3.10596 3.20262 3.25773 3.37741 3.59642 3.64258 3.68404 3.75529 3.85814 3.91472 4.01789 4.03781 4.09834 4.17507 4.23704 4.33117 4.47859 4.55577 4.62119 4.66496 4.70690 4.75226 5.01155 5.04511 5.34282 6.29205 6.82012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.335 6.335 3 C 0.494 3.506 4 O -0.510 6.510 5 C -0.140 4.140 6 C -0.023 4.023 7 C -0.111 4.111 8 C -0.022 4.022 9 C -0.097 4.097 10 O -0.561 6.561 11 Si 0.969 3.031 12 H -0.261 1.261 13 H -0.258 1.258 14 H -0.240 1.240 15 C -0.080 4.080 16 C 0.100 3.900 17 O -0.639 6.639 18 S 2.703 3.297 19 O -0.932 6.932 20 O -0.939 6.939 21 C -0.672 4.672 22 C 0.025 3.975 23 C -0.127 4.127 24 C 0.382 3.618 25 F -0.201 7.201 26 F -0.158 7.158 27 F -0.163 7.163 28 F -0.168 7.168 29 F -0.146 7.146 30 C -0.131 4.131 31 C 0.089 3.911 32 H 0.054 0.946 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.186 0.814 36 H 0.164 0.836 37 H 0.112 0.888 38 H 0.404 0.596 39 H 0.163 0.837 40 H 0.224 0.776 41 H 0.208 0.792 42 H 0.201 0.799 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.176 -0.844 4.701 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.250 6.250 3 C 0.340 3.660 4 O -0.401 6.401 5 C -0.144 4.144 6 C -0.040 4.040 7 C -0.129 4.129 8 C -0.022 4.022 9 C -0.206 4.206 10 O -0.371 6.371 11 Si 0.792 3.208 12 H -0.185 1.185 13 H -0.182 1.182 14 H -0.164 1.164 15 C -0.100 4.100 16 C 0.058 3.942 17 O -0.598 6.598 18 S 2.793 3.207 19 O -0.931 6.931 20 O -0.938 6.938 21 C -0.754 4.754 22 C 0.007 3.993 23 C -0.145 4.145 24 C 0.376 3.624 25 F -0.201 7.201 26 F -0.157 7.157 27 F -0.162 7.162 28 F -0.167 7.167 29 F -0.145 7.145 30 C -0.149 4.149 31 C 0.071 3.929 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.203 0.797 36 H 0.181 0.819 37 H 0.130 0.870 38 H 0.255 0.745 39 H 0.181 0.819 40 H 0.240 0.760 41 H 0.224 0.776 42 H 0.217 0.783 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 12.993 -0.743 4.947 13.923 hybrid contribution -1.968 -0.493 -0.688 2.143 sum 11.025 -1.236 4.260 11.884 Atomic orbital electron populations 1.23678 0.74332 1.05836 1.02771 1.86547 1.24472 1.30748 1.83262 1.21029 0.88930 0.82299 0.73742 1.90862 1.67077 1.36211 1.45933 1.19339 0.89949 0.93629 1.11461 1.21695 0.93019 0.98099 0.91230 1.21604 0.95167 0.98150 0.98027 1.19789 0.95671 0.92250 0.94487 1.24991 0.92275 1.11806 0.91549 1.86446 1.29850 1.84502 1.36279 0.85388 0.79797 0.74393 0.81236 1.18548 1.18172 1.16356 1.21333 0.89894 1.01875 0.96944 1.18175 0.89809 0.80005 1.06167 1.85712 1.72699 1.45522 1.55843 1.02101 0.73345 0.73292 0.72008 1.93666 1.78918 1.36404 1.84071 1.93676 1.45796 1.85457 1.68826 1.31874 1.15907 1.14551 1.13048 1.21712 1.00120 0.87847 0.89603 1.22156 0.84063 1.05121 1.03169 1.27918 0.63151 0.77673 0.93661 2.00000 1.56715 1.74237 1.89117 1.99910 1.76904 1.74800 1.64052 1.99919 1.44845 1.93101 1.78320 1.99921 1.77726 1.44241 1.94802 1.99918 1.44133 1.70848 1.99605 1.22164 1.06033 0.89706 0.96993 1.21357 0.86480 0.95788 0.89261 0.92733 0.86073 0.90540 0.79711 0.81904 0.86996 0.74451 0.81918 0.75952 0.77555 0.78260 0.77025 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 464. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.11 10.57 113.37 1.20 1.08 16 2 O -0.34 1.75 9.82 -56.61 -0.56 1.19 16 3 C 0.49 -2.24 5.78 70.24 0.41 -1.84 16 4 O -0.51 1.42 9.52 26.81 0.26 1.67 16 5 C -0.14 0.93 5.15 -20.02 -0.10 0.82 16 6 C -0.02 0.25 9.61 22.53 0.22 0.47 16 7 C -0.11 1.24 8.64 22.24 0.19 1.43 16 8 C -0.02 0.18 5.39 -19.83 -0.11 0.07 16 9 C -0.10 1.07 2.78 71.24 0.20 1.27 16 10 O -0.56 4.99 12.81 -148.98 -1.91 3.08 16 11 Si 0.97 -10.79 25.12 68.60 1.72 -9.06 16 12 H -0.26 2.34 7.11 99.48 0.71 3.04 16 13 H -0.26 2.23 7.04 99.48 0.70 2.93 16 14 H -0.24 2.75 7.11 99.48 0.71 3.45 16 15 C -0.08 0.46 8.81 22.34 0.20 0.65 16 16 C 0.10 -0.41 4.81 22.86 0.11 -0.30 16 17 O -0.64 1.14 8.73 -55.82 -0.49 0.65 16 18 S 2.70 -6.36 5.33 -56.49 -0.30 -6.66 16 19 O -0.93 -3.15 17.27 -118.78 -2.05 -5.21 16 20 O -0.94 1.97 15.61 -118.78 -1.85 0.12 16 21 C -0.67 4.09 3.11 22.27 0.07 4.16 16 22 C 0.02 -0.24 7.23 22.27 0.16 -0.08 16 23 C -0.13 0.82 8.62 22.27 0.19 1.02 16 24 C 0.38 -0.15 3.24 22.27 0.07 -0.08 16 25 F -0.20 -4.57 16.66 44.97 0.75 -3.82 16 26 F -0.16 -1.78 14.23 44.97 0.64 -1.14 16 27 F -0.16 -2.17 15.30 44.97 0.69 -1.48 16 28 F -0.17 -2.41 15.32 44.97 0.69 -1.72 16 29 F -0.15 -1.49 15.31 44.97 0.69 -0.81 16 30 C -0.13 0.58 7.94 22.27 0.18 0.76 16 31 C 0.09 -0.60 7.17 22.27 0.16 -0.44 16 32 H 0.05 -0.14 4.45 -2.39 -0.01 -0.15 16 33 H 0.12 -0.72 8.14 -2.38 -0.02 -0.74 16 34 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 35 H 0.19 -2.93 7.61 -2.91 -0.02 -2.95 16 36 H 0.16 -2.42 4.83 -2.91 -0.01 -2.43 16 37 H 0.11 -1.69 7.96 -2.39 -0.02 -1.71 16 38 H 0.40 -6.84 8.74 -74.06 -0.65 -7.49 16 39 H 0.16 -1.17 8.06 -2.91 -0.02 -1.19 16 40 H 0.22 -3.65 7.62 -2.91 -0.02 -3.67 16 41 H 0.21 -1.99 7.40 -2.91 -0.02 -2.01 16 42 H 0.20 -1.26 7.40 -2.91 -0.02 -1.28 16 43 H 0.21 -2.27 7.62 -2.91 -0.02 -2.29 16 Total: 0.00 -33.73 389.10 2.66 -31.06 By element: Atomic # 1 Polarization: -18.13 SS G_CDS: 1.25 Total: -16.88 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 3.14 Total: 9.00 kcal Atomic # 8 Polarization: 8.12 SS G_CDS: -6.60 Total: 1.52 kcal Atomic # 9 Polarization: -12.43 SS G_CDS: 3.45 Total: -8.97 kcal Atomic # 14 Polarization: -10.79 SS G_CDS: 1.72 Total: -9.06 kcal Atomic # 16 Polarization: -6.36 SS G_CDS: -0.30 Total: -6.66 kcal Total: -33.73 2.66 -31.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16464680_8643202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 276.218 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 242.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 245.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 37.67 seconds