Wall clock time and date at job start Mon Mar 8 2021 09:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42900 * 114.00194 * 2 1 4 4 H 1.09005 * 112.84755 * 341.19484 * 3 2 1 5 5 C 1.53957 * 113.74747 * 112.40056 * 3 2 1 6 6 C 1.53784 * 87.01888 * 139.94647 * 5 3 2 7 7 H 1.09002 * 113.61402 * 89.23003 * 6 5 3 8 8 C 1.53005 * 113.60969 * 220.04729 * 6 5 3 9 9 C 1.52991 * 109.46963 * 274.13565 * 8 6 5 10 10 N 1.46506 * 109.46887 * 180.02562 * 9 8 6 11 11 S 1.65602 * 120.00166 * 165.00118 * 10 9 8 12 12 O 1.42105 * 106.40176 * 311.46127 * 11 10 9 13 13 O 1.42095 * 106.40125 * 178.53983 * 11 10 9 14 14 C 1.76205 * 107.21590 * 64.99795 * 11 10 9 15 15 C 1.38228 * 120.00115 * 270.21437 * 14 11 10 16 16 C 1.38238 * 120.00114 * 180.26081 * 15 14 11 17 17 C 1.38234 * 119.99675 * 359.50218 * 16 15 14 18 18 C 1.50702 * 120.00257 * 180.25732 * 17 16 15 19 19 O 1.42900 * 109.47024 * 300.00864 * 18 17 16 20 20 Si 1.86294 * 109.47567 * 180.02562 * 18 17 16 21 21 C 1.38235 * 120.00220 * 0.28720 * 17 16 15 22 22 C 1.38234 * 119.99800 * 90.00128 * 14 11 10 23 23 C 1.53781 * 113.61584 * 210.00169 * 3 2 1 24 24 H 1.09007 * 109.47478 * 300.00205 * 1 2 3 25 25 H 1.08998 * 109.47487 * 60.00092 * 1 2 3 26 26 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08996 * 113.60734 * 25.42422 * 5 3 2 28 28 H 1.08997 * 113.66546 * 254.47184 * 5 3 2 29 29 H 1.09008 * 109.46551 * 154.13792 * 8 6 5 30 30 H 1.08999 * 109.47074 * 34.14303 * 8 6 5 31 31 H 1.08999 * 109.47195 * 60.00414 * 9 8 6 32 32 H 1.08999 * 109.47829 * 300.00276 * 9 8 6 33 33 H 0.97002 * 119.99688 * 344.99784 * 10 9 8 34 34 H 1.08004 * 120.00270 * 0.03482 * 15 14 11 35 35 H 1.08002 * 120.00519 * 179.78838 * 16 15 14 36 36 H 1.09007 * 109.46732 * 60.00541 * 18 17 16 37 37 H 0.96698 * 114.00016 * 299.99253 * 19 18 17 38 38 H 1.48500 * 109.99877 * 58.68183 * 20 18 17 39 39 H 1.48501 * 110.00277 * 180.02562 * 20 18 17 40 40 H 1.07996 * 120.00471 * 179.97438 * 21 17 16 41 41 H 1.08001 * 120.00294 * 0.02562 * 22 14 11 42 42 H 1.09000 * 113.61485 * 105.38697 * 23 3 2 43 43 H 1.09001 * 113.69091 * 334.48611 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7529 1.6534 1.3029 6 6 3.8219 2.3200 0.4209 7 1 3.6220 3.3709 0.2116 8 6 5.2537 2.0714 0.8999 9 6 5.6277 3.1162 1.9530 10 7 6.9988 2.8786 2.4112 11 16 7.8027 4.0506 3.2612 12 8 7.6344 5.2601 2.5344 13 8 9.0760 3.5093 3.5851 14 6 6.9500 4.2650 4.7882 15 6 5.9222 5.1844 4.8827 16 6 5.2568 5.3564 6.0821 17 6 5.6124 4.6015 7.1842 18 6 4.8833 4.7848 8.4903 19 8 5.0325 6.1350 8.9337 20 14 5.5958 3.6301 9.7668 21 6 6.6374 3.6790 7.0885 22 6 7.3060 3.5105 5.8904 23 6 3.3755 1.3719 -0.7045 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1163 0.7802 1.8447 28 1 2.2137 2.3541 1.9402 29 1 5.9377 2.1466 0.0545 30 1 5.3231 1.0749 1.3359 31 1 4.9436 3.0411 2.7983 32 1 5.5583 4.1128 1.5170 33 1 7.4357 2.0347 2.2167 34 1 5.6413 5.7710 4.0205 35 1 4.4559 6.0772 6.1570 36 1 3.8252 4.5633 8.3498 37 1 5.9504 6.4019 9.0796 38 1 7.0450 3.9012 9.9442 39 1 4.8848 3.8007 11.0593 40 1 6.9156 3.0895 7.9496 41 1 8.1071 2.7900 5.8157 42 1 3.3381 1.8458 -1.6854 43 1 3.9105 0.4222 -0.7133 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16488028_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:44:55 Heat of formation + Delta-G solvation = -98.565943 kcal Electronic energy + Delta-G solvation = -25742.410586 eV Core-core repulsion = 21882.194259 eV Total energy + Delta-G solvation = -3860.216327 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.122 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.78306 -40.64165 -38.29518 -37.92332 -37.75973 -36.86071 -36.28679 -33.10867 -32.27858 -31.25379 -27.73118 -27.32561 -26.80082 -25.27962 -24.17074 -23.08576 -22.72760 -20.89801 -20.40433 -19.30632 -18.61926 -18.28218 -17.62684 -17.38146 -17.01542 -16.67167 -16.50994 -16.33956 -16.16803 -15.97281 -15.75955 -15.50713 -15.17955 -14.90234 -14.52618 -14.12328 -14.00590 -13.79504 -13.71963 -13.46347 -13.25166 -13.10272 -13.03394 -12.93454 -12.72468 -12.62224 -12.56628 -12.36310 -11.92558 -11.84120 -11.80913 -11.51815 -11.32828 -10.86492 -10.65318 -10.46362 -10.43970 -10.21724 -5.10822 -0.72629 -0.40277 0.11032 1.09086 1.46466 1.83052 1.86902 2.28070 2.72567 2.81585 3.14461 3.22115 3.37067 3.39649 3.51532 3.65949 3.70703 3.73039 3.77331 3.86942 4.03956 4.07940 4.13030 4.26014 4.29640 4.34527 4.39993 4.42804 4.48192 4.51638 4.59807 4.72397 4.73463 4.75146 4.77021 4.85011 4.87499 4.89752 4.96600 5.04329 5.15361 5.17339 5.32830 5.61175 5.83456 6.20072 6.25096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.058 3.942 4 H 0.087 0.913 5 C -0.153 4.153 6 C -0.110 4.110 7 H 0.097 0.903 8 C -0.114 4.114 9 C 0.114 3.886 10 N -1.116 6.116 11 S 2.695 3.305 12 O -0.953 6.953 13 O -0.955 6.955 14 C -0.674 4.674 15 C -0.020 4.020 16 C -0.114 4.114 17 C -0.062 4.062 18 C -0.084 4.084 19 O -0.526 6.526 20 Si 0.686 3.314 21 C -0.138 4.138 22 C -0.012 4.012 23 C -0.132 4.132 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.420 0.580 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.378 0.622 38 H -0.257 1.257 39 H -0.253 1.253 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.074 0.926 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 -3.278 -0.291 5.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.000 4.000 4 H 0.105 0.895 5 C -0.190 4.190 6 C -0.129 4.129 7 H 0.115 0.885 8 C -0.152 4.152 9 C -0.011 4.011 10 N -0.877 5.877 11 S 2.785 3.215 12 O -0.943 6.943 13 O -0.946 6.946 14 C -0.761 4.761 15 C -0.039 4.039 16 C -0.133 4.133 17 C -0.063 4.063 18 C -0.193 4.193 19 O -0.332 6.332 20 Si 0.586 3.414 21 C -0.157 4.157 22 C -0.032 4.032 23 C -0.169 4.169 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.256 0.744 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.226 0.774 38 H -0.182 1.182 39 H -0.178 1.178 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.092 0.908 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.885 -2.889 0.219 4.846 hybrid contribution -0.164 0.865 0.453 0.990 sum -4.049 -2.024 0.672 4.576 Atomic orbital electron populations 1.22805 0.81025 1.02945 0.99975 1.87949 1.19775 1.27351 1.94575 1.23760 0.93965 0.85365 0.96888 0.89523 1.23651 0.97366 1.00934 0.97072 1.22290 0.93827 0.99663 0.97117 0.88470 1.21715 0.96159 0.98953 0.98419 1.21385 0.81081 1.00601 0.98074 1.55522 1.26389 1.34240 1.71571 1.01888 0.72944 0.73302 0.73404 1.93609 1.86061 1.44460 1.70156 1.93617 1.37254 1.79113 1.84572 1.31021 1.14379 1.09165 1.21497 1.21019 0.91114 0.93105 0.98693 1.21183 1.00586 0.99619 0.91895 1.20694 0.94701 0.94636 0.96239 1.25195 1.05771 0.90718 0.97646 1.86623 1.32227 1.26423 1.87929 0.94963 0.79666 0.87888 0.78837 1.21169 0.96706 0.99327 0.98467 1.20903 0.96161 0.94996 0.91095 1.23275 0.95337 1.00316 0.97999 0.93993 0.93958 0.89587 0.88974 0.91161 0.90457 0.90636 0.91474 0.90013 0.74448 0.83912 0.84496 0.85738 0.77370 1.18170 1.17784 0.84530 0.83669 0.90772 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.49 10.72 -35.23 -0.38 -0.87 16 3 C 0.06 -0.05 4.31 -25.83 -0.11 -0.16 16 4 H 0.09 -0.17 7.87 -51.93 -0.41 -0.58 16 5 C -0.15 0.31 7.48 -25.82 -0.19 0.12 16 6 C -0.11 0.31 3.64 -89.80 -0.33 -0.02 16 7 H 0.10 -0.33 8.14 -51.93 -0.42 -0.76 16 8 C -0.11 0.36 5.18 -26.73 -0.14 0.22 16 9 C 0.11 -0.32 6.22 -4.04 -0.03 -0.35 16 10 N -1.12 2.37 6.00 -10.61 -0.06 2.31 16 11 S 2.70 2.28 5.74 -107.50 -0.62 1.67 16 12 O -0.95 -3.61 16.76 -57.17 -0.96 -4.57 16 13 O -0.96 -3.53 17.28 -57.17 -0.99 -4.52 16 14 C -0.67 -0.08 5.95 -39.59 -0.24 -0.32 16 15 C -0.02 0.01 9.52 -39.59 -0.38 -0.37 16 16 C -0.11 0.06 9.61 -39.58 -0.38 -0.33 16 17 C -0.06 0.05 5.39 -104.62 -0.56 -0.51 16 18 C -0.08 0.11 2.82 36.01 0.10 0.22 16 19 O -0.53 -0.14 12.77 -35.23 -0.45 -0.59 16 20 Si 0.69 -1.30 29.79 -169.99 -5.06 -6.36 16 21 C -0.14 0.15 8.67 -39.58 -0.34 -0.19 16 22 C -0.01 0.00 9.52 -39.58 -0.38 -0.37 16 23 C -0.13 0.22 7.48 -25.92 -0.19 0.02 16 24 H 0.04 -0.07 8.14 -51.93 -0.42 -0.50 16 25 H 0.04 -0.07 8.14 -51.93 -0.42 -0.50 16 26 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 27 H 0.09 -0.13 7.92 -51.93 -0.41 -0.54 16 28 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 29 H 0.08 -0.24 8.14 -51.92 -0.42 -0.66 16 30 H 0.07 -0.26 7.87 -51.93 -0.41 -0.67 16 31 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 32 H 0.08 -0.21 7.75 -51.93 -0.40 -0.62 16 33 H 0.42 -1.56 8.65 -34.47 -0.30 -1.86 16 34 H 0.14 -0.22 7.62 -52.48 -0.40 -0.62 16 35 H 0.14 -0.20 8.06 -52.49 -0.42 -0.62 16 36 H 0.12 -0.30 7.96 -51.93 -0.41 -0.71 16 37 H 0.38 -0.89 8.70 45.56 0.40 -0.49 16 38 H -0.26 -0.05 7.11 56.52 0.40 0.35 16 39 H -0.25 -0.38 7.11 56.52 0.40 0.03 16 40 H 0.14 -0.42 4.88 -52.49 -0.26 -0.67 16 41 H 0.15 -0.26 7.62 -52.49 -0.40 -0.66 16 42 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 43 H 0.09 -0.09 8.10 -51.93 -0.42 -0.51 16 LS Contribution 368.04 15.07 5.55 5.55 Total: 0.00 -9.90 368.04 -11.46 -21.36 By element: Atomic # 1 Polarization: -6.58 SS G_CDS: -6.43 Total: -13.01 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.07 Total: -0.98 kcal Atomic # 7 Polarization: 2.37 SS G_CDS: -0.06 Total: 2.31 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -2.77 Total: -10.54 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -5.06 Total: -6.36 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -0.62 Total: 1.67 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -9.90 -11.46 -21.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16488028_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.205 kcal (2) G-P(sol) polarization free energy of solvation -9.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds