Wall clock time and date at job start Mon Mar 8 2021 09:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42900 * 114.00194 * 2 1 4 4 H 1.09005 * 112.84755 * 341.19484 * 3 2 1 5 5 C 1.53957 * 113.74747 * 112.40056 * 3 2 1 6 6 C 1.53784 * 87.01888 * 139.94647 * 5 3 2 7 7 H 1.09002 * 113.61402 * 89.23003 * 6 5 3 8 8 C 1.53005 * 113.60969 * 220.04729 * 6 5 3 9 9 C 1.52991 * 109.46963 * 274.13565 * 8 6 5 10 10 N 1.46506 * 109.46887 * 180.02562 * 9 8 6 11 11 S 1.65602 * 120.00166 * 165.00118 * 10 9 8 12 12 O 1.42105 * 106.40176 * 311.46127 * 11 10 9 13 13 O 1.42095 * 106.40125 * 178.53983 * 11 10 9 14 14 C 1.76205 * 107.21590 * 64.99795 * 11 10 9 15 15 C 1.38228 * 120.00115 * 270.21437 * 14 11 10 16 16 C 1.38238 * 120.00114 * 180.26081 * 15 14 11 17 17 C 1.38234 * 119.99675 * 359.50218 * 16 15 14 18 18 C 1.50702 * 120.00257 * 180.25732 * 17 16 15 19 19 O 1.42900 * 109.47024 * 300.00864 * 18 17 16 20 20 Si 1.86294 * 109.47567 * 180.02562 * 18 17 16 21 21 C 1.38235 * 120.00220 * 0.28720 * 17 16 15 22 22 C 1.38234 * 119.99800 * 90.00128 * 14 11 10 23 23 C 1.53781 * 113.61584 * 210.00169 * 3 2 1 24 24 H 1.09007 * 109.47478 * 300.00205 * 1 2 3 25 25 H 1.08998 * 109.47487 * 60.00092 * 1 2 3 26 26 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08996 * 113.60734 * 25.42422 * 5 3 2 28 28 H 1.08997 * 113.66546 * 254.47184 * 5 3 2 29 29 H 1.09008 * 109.46551 * 154.13792 * 8 6 5 30 30 H 1.08999 * 109.47074 * 34.14303 * 8 6 5 31 31 H 1.08999 * 109.47195 * 60.00414 * 9 8 6 32 32 H 1.08999 * 109.47829 * 300.00276 * 9 8 6 33 33 H 0.97002 * 119.99688 * 344.99784 * 10 9 8 34 34 H 1.08004 * 120.00270 * 0.03482 * 15 14 11 35 35 H 1.08002 * 120.00519 * 179.78838 * 16 15 14 36 36 H 1.09007 * 109.46732 * 60.00541 * 18 17 16 37 37 H 0.96698 * 114.00016 * 299.99253 * 19 18 17 38 38 H 1.48500 * 109.99877 * 58.68183 * 20 18 17 39 39 H 1.48501 * 110.00277 * 180.02562 * 20 18 17 40 40 H 1.07996 * 120.00471 * 179.97438 * 21 17 16 41 41 H 1.08001 * 120.00294 * 0.02562 * 22 14 11 42 42 H 1.09000 * 113.61485 * 105.38697 * 23 3 2 43 43 H 1.09001 * 113.69091 * 334.48611 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7529 1.6534 1.3029 6 6 3.8219 2.3200 0.4209 7 1 3.6220 3.3709 0.2116 8 6 5.2537 2.0714 0.8999 9 6 5.6277 3.1162 1.9530 10 7 6.9988 2.8786 2.4112 11 16 7.8027 4.0506 3.2612 12 8 7.6344 5.2601 2.5344 13 8 9.0760 3.5093 3.5851 14 6 6.9500 4.2650 4.7882 15 6 5.9222 5.1844 4.8827 16 6 5.2568 5.3564 6.0821 17 6 5.6124 4.6015 7.1842 18 6 4.8833 4.7848 8.4903 19 8 5.0325 6.1350 8.9337 20 14 5.5958 3.6301 9.7668 21 6 6.6374 3.6790 7.0885 22 6 7.3060 3.5105 5.8904 23 6 3.3755 1.3719 -0.7045 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1163 0.7802 1.8447 28 1 2.2137 2.3541 1.9402 29 1 5.9377 2.1466 0.0545 30 1 5.3231 1.0749 1.3359 31 1 4.9436 3.0411 2.7983 32 1 5.5583 4.1128 1.5170 33 1 7.4357 2.0347 2.2167 34 1 5.6413 5.7710 4.0205 35 1 4.4559 6.0772 6.1570 36 1 3.8252 4.5633 8.3498 37 1 5.9504 6.4019 9.0796 38 1 7.0450 3.9012 9.9442 39 1 4.8848 3.8007 11.0593 40 1 6.9156 3.0895 7.9496 41 1 8.1071 2.7900 5.8157 42 1 3.3381 1.8458 -1.6854 43 1 3.9105 0.4222 -0.7133 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16488028_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:44:54 Heat of formation + Delta-G solvation = -101.279021 kcal Electronic energy + Delta-G solvation = -25742.528234 eV Core-core repulsion = 21882.194259 eV Total energy + Delta-G solvation = -3860.333975 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.122 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70308 -40.49732 -38.44810 -37.87076 -37.67272 -37.03756 -36.16842 -33.05030 -32.19592 -31.09057 -27.62519 -27.25295 -26.63819 -25.12526 -24.08773 -23.01913 -22.55341 -20.81564 -20.31952 -19.26178 -18.61023 -18.28961 -17.53544 -17.36270 -16.92375 -16.54218 -16.40479 -16.21918 -16.07993 -15.88571 -15.69881 -15.52772 -15.03390 -14.82668 -14.49552 -14.05350 -13.93945 -13.77467 -13.56802 -13.32356 -13.31675 -13.25119 -13.11273 -12.84355 -12.67341 -12.55679 -12.45917 -12.20663 -11.94114 -11.77830 -11.65527 -11.36028 -11.14773 -10.79689 -10.50196 -10.38888 -10.34809 -10.14227 -4.98048 -0.73868 -0.38337 0.18738 1.21332 1.55572 1.90809 1.91761 2.32997 2.70520 2.93533 3.21327 3.28746 3.48003 3.55999 3.69435 3.76136 3.82490 3.87956 3.95219 4.05506 4.18261 4.22230 4.33255 4.38332 4.43057 4.49030 4.55978 4.61532 4.61879 4.69484 4.78530 4.84154 4.86317 4.90140 4.93875 4.95161 4.97785 5.03838 5.15421 5.23732 5.24970 5.36516 5.53461 5.69727 6.05348 6.35491 6.36931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.047 3.953 4 H 0.095 0.905 5 C -0.149 4.149 6 C -0.101 4.101 7 H 0.107 0.893 8 C -0.110 4.110 9 C 0.109 3.891 10 N -1.106 6.106 11 S 2.712 3.288 12 O -0.986 6.986 13 O -0.988 6.988 14 C -0.677 4.677 15 C -0.027 4.027 16 C -0.120 4.120 17 C -0.063 4.063 18 C -0.089 4.089 19 O -0.544 6.544 20 Si 0.766 3.234 21 C -0.141 4.141 22 C -0.022 4.022 23 C -0.135 4.135 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.429 0.571 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.388 0.612 38 H -0.283 1.283 39 H -0.301 1.301 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.076 0.924 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 -3.446 -0.126 6.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.010 4.010 4 H 0.113 0.887 5 C -0.187 4.187 6 C -0.120 4.120 7 H 0.125 0.875 8 C -0.149 4.149 9 C -0.016 4.016 10 N -0.869 5.869 11 S 2.803 3.197 12 O -0.976 6.976 13 O -0.978 6.978 14 C -0.766 4.766 15 C -0.047 4.047 16 C -0.139 4.139 17 C -0.063 4.063 18 C -0.197 4.197 19 O -0.352 6.352 20 Si 0.671 3.329 21 C -0.159 4.159 22 C -0.041 4.041 23 C -0.173 4.173 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.266 0.734 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.237 0.763 38 H -0.209 1.209 39 H -0.229 1.229 40 H 0.173 0.827 41 H 0.174 0.826 42 H 0.095 0.905 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.436 -3.066 0.343 5.403 hybrid contribution -0.040 0.917 0.443 1.019 sum -4.476 -2.150 0.786 5.027 Atomic orbital electron populations 1.22911 0.80187 1.03442 1.00619 1.87909 1.20915 1.28737 1.94786 1.23982 0.94314 0.84876 0.97841 0.88665 1.23611 0.97431 1.00874 0.96756 1.22257 0.93725 0.99839 0.96168 0.87522 1.21684 0.95911 0.99021 0.98293 1.21536 0.80640 1.00691 0.98740 1.55243 1.26673 1.33967 1.71053 1.01088 0.72437 0.72793 0.73386 1.93564 1.86535 1.46296 1.71201 1.93567 1.39534 1.79559 1.85127 1.30846 1.14701 1.09904 1.21101 1.21182 0.91086 0.93137 0.99260 1.21337 1.00833 0.99866 0.91873 1.20783 0.94696 0.94544 0.96300 1.25372 1.06658 0.90185 0.97528 1.86596 1.33317 1.27296 1.88028 0.94068 0.76456 0.86614 0.75740 1.21387 0.96346 0.99357 0.98835 1.21136 0.96578 0.95239 0.91193 1.23286 0.95125 1.00274 0.98566 0.93281 0.93355 0.89261 0.89650 0.90331 0.90485 0.90256 0.90111 0.90129 0.73419 0.83082 0.83717 0.84549 0.76311 1.20947 1.22884 0.82749 0.82633 0.90529 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -1.20 10.72 -148.98 -1.60 -2.80 16 3 C 0.05 -0.09 4.31 31.18 0.13 0.05 16 4 H 0.10 -0.40 7.87 -2.38 -0.02 -0.41 16 5 C -0.15 0.68 7.48 31.18 0.23 0.92 16 6 C -0.10 0.63 3.64 -10.26 -0.04 0.59 16 7 H 0.11 -0.84 8.14 -2.39 -0.02 -0.86 16 8 C -0.11 0.76 5.18 30.59 0.16 0.92 16 9 C 0.11 -0.68 6.22 86.38 0.54 -0.15 16 10 N -1.11 4.83 6.00 -187.49 -1.12 3.71 16 11 S 2.71 5.86 5.74 -56.49 -0.32 5.53 16 12 O -0.99 -8.20 16.76 -128.00 -2.15 -10.34 16 13 O -0.99 -8.03 17.28 -128.00 -2.21 -10.25 16 14 C -0.68 -0.11 5.95 22.27 0.13 0.02 16 15 C -0.03 0.02 9.52 22.27 0.21 0.23 16 16 C -0.12 0.19 9.61 22.27 0.21 0.41 16 17 C -0.06 0.15 5.39 -19.87 -0.11 0.05 16 18 C -0.09 0.31 2.82 71.24 0.20 0.52 16 19 O -0.54 -0.05 12.77 -148.98 -1.90 -1.95 16 20 Si 0.77 -3.20 29.79 68.60 2.04 -1.16 16 21 C -0.14 0.43 8.67 22.27 0.19 0.62 16 22 C -0.02 0.03 9.52 22.27 0.21 0.24 16 23 C -0.13 0.43 7.48 31.12 0.23 0.66 16 24 H 0.05 -0.18 8.14 -2.38 -0.02 -0.20 16 25 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.08 -0.26 7.92 -2.39 -0.02 -0.28 16 28 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H 0.08 -0.50 8.14 -2.38 -0.02 -0.52 16 30 H 0.08 -0.59 7.87 -2.39 -0.02 -0.61 16 31 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 32 H 0.08 -0.45 7.75 -2.39 -0.02 -0.47 16 33 H 0.43 -3.25 8.65 -96.74 -0.84 -4.08 16 34 H 0.15 -0.47 7.62 -2.91 -0.02 -0.50 16 35 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 36 H 0.14 -0.82 7.96 -2.38 -0.02 -0.84 16 37 H 0.39 -1.90 8.70 -74.06 -0.64 -2.54 16 38 H -0.28 -0.02 7.11 99.48 0.71 0.68 16 39 H -0.30 -1.16 7.11 99.48 0.71 -0.45 16 40 H 0.16 -1.14 4.88 -2.91 -0.01 -1.15 16 41 H 0.16 -0.61 7.62 -2.91 -0.02 -0.63 16 42 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.08 -0.12 8.10 -2.39 -0.02 -0.14 16 Total: 0.00 -22.45 368.04 -4.13 -26.59 By element: Atomic # 1 Polarization: -15.17 SS G_CDS: -0.42 Total: -15.59 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 3.55 Total: 6.26 kcal Atomic # 7 Polarization: 4.83 SS G_CDS: -1.12 Total: 3.71 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -7.86 Total: -25.34 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: 2.04 Total: -1.16 kcal Atomic # 16 Polarization: 5.86 SS G_CDS: -0.32 Total: 5.53 kcal Total: -22.45 -4.13 -26.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16488028_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.693 kcal (2) G-P(sol) polarization free energy of solvation -22.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds