Wall clock time and date at job start Mon Mar 8 2021 09:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99895 * 2 1 4 4 H 1.09001 * 112.84813 * 18.80518 * 3 2 1 5 5 C 1.53783 * 113.61576 * 149.99670 * 3 2 1 6 6 C 1.53777 * 87.07934 * 140.06923 * 5 3 2 7 7 H 1.08997 * 113.61504 * 89.20395 * 6 5 3 8 8 C 1.53005 * 113.61214 * 220.02362 * 6 5 3 9 9 C 1.53004 * 109.47044 * 183.47105 * 8 6 5 10 10 N 1.46499 * 109.47094 * 179.97438 * 9 8 6 11 11 S 1.65597 * 119.99926 * 165.27799 * 10 9 8 12 12 O 1.42096 * 106.40195 * 178.26439 * 11 10 9 13 13 O 1.42108 * 106.40105 * 311.18495 * 11 10 9 14 14 C 1.76199 * 107.22117 * 64.72196 * 11 10 9 15 15 C 1.33392 * 125.20480 * 179.72040 * 14 11 10 16 16 C 1.50697 * 122.54129 * 0.02562 * 15 14 11 17 17 O 1.42904 * 109.46802 * 74.99837 * 16 15 14 18 18 Si 1.86292 * 109.47321 * 195.00070 * 16 15 14 19 19 C 1.38425 * 114.91605 * 179.86231 * 15 14 11 20 20 C 1.33380 * 114.92623 * 0.42711 * 19 15 14 21 21 S 1.75886 * 109.59392 * 359.77167 * 20 19 15 22 22 C 1.53778 * 87.17352 * 334.61244 * 6 5 3 23 23 H 1.09004 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47015 * 299.99665 * 1 2 3 25 25 H 1.09007 * 109.47107 * 60.00106 * 1 2 3 26 26 H 1.08998 * 113.60902 * 25.52147 * 5 3 2 27 27 H 1.09000 * 113.69282 * 254.63363 * 5 3 2 28 28 H 1.08994 * 109.47357 * 63.47433 * 8 6 5 29 29 H 1.09002 * 109.47067 * 303.46661 * 8 6 5 30 30 H 1.09007 * 109.47007 * 59.99772 * 9 8 6 31 31 H 1.08995 * 109.47080 * 300.00016 * 9 8 6 32 32 H 0.97001 * 119.99790 * 344.99588 * 10 9 8 33 33 H 1.08999 * 109.46502 * 315.00364 * 16 15 14 34 34 H 0.96701 * 113.99414 * 180.02562 * 17 16 15 35 35 H 1.48504 * 110.00252 * 178.67978 * 18 16 15 36 36 H 1.48496 * 110.00067 * 300.00202 * 18 16 15 37 37 H 1.08007 * 122.53299 * 180.20325 * 19 15 14 38 38 H 1.08007 * 125.20794 * 179.79305 * 20 19 15 39 39 H 1.09001 * 113.61512 * 139.94055 * 22 6 5 40 40 H 1.09006 * 113.61721 * 270.84259 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3238 5 6 3.3755 1.3720 0.7046 6 6 3.8219 2.3200 -0.4209 7 1 3.6220 3.3709 -0.2116 8 6 5.2537 2.0715 -0.8998 9 6 5.6278 3.1163 -1.9530 10 7 6.9989 2.8787 -2.4111 11 16 7.5488 3.6091 -3.7918 12 8 8.9063 3.2162 -3.9402 13 8 6.5605 3.3814 -4.7872 14 6 7.5632 5.3455 -3.4931 15 6 7.9507 6.2734 -4.3696 16 6 8.4333 5.9286 -5.7550 17 8 7.3176 5.5683 -6.5720 18 14 9.2960 7.4035 -6.4971 19 6 7.8726 7.5773 -3.9114 20 6 7.4301 7.7077 -2.6599 21 16 7.0760 6.1200 -1.9910 22 6 2.7530 1.6534 -1.3028 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 3.9094 0.4218 0.7125 27 1 3.3395 1.8454 1.6858 28 1 5.3231 1.0750 -1.3359 29 1 5.9377 2.1467 -0.0545 30 1 5.5583 4.1129 -1.5169 31 1 4.9438 3.0412 -2.7983 32 1 7.5858 2.2968 -1.9034 33 1 9.1285 5.0909 -5.6994 34 1 7.5545 5.3331 -7.4796 35 1 9.8046 7.0664 -7.8510 36 1 8.3587 8.5524 -6.5782 37 1 8.1523 8.4246 -4.5200 38 1 7.3077 8.6449 -2.1372 39 1 2.2136 2.3542 -1.9401 40 1 3.1164 0.7802 -1.8447 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16488028_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:44:58 Heat of formation + Delta-G solvation = -83.131140 kcal Electronic energy + Delta-G solvation = -24748.287398 eV Core-core repulsion = 20977.892620 eV Total energy + Delta-G solvation = -3770.394778 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.61696 -39.94439 -38.14376 -37.74308 -37.28306 -36.75749 -36.31281 -31.53697 -31.25602 -28.07318 -27.69841 -26.76478 -25.27361 -24.21432 -22.79638 -21.57614 -20.64796 -19.79816 -19.60878 -18.66039 -18.14222 -17.57285 -17.39702 -17.24432 -16.61102 -16.36495 -16.08262 -15.87886 -15.80703 -15.66037 -15.35760 -14.64304 -14.26041 -14.21318 -13.99354 -13.68910 -13.59317 -13.42626 -13.31502 -13.08021 -12.96822 -12.88510 -12.70434 -12.56377 -12.52280 -12.35195 -12.28882 -11.81663 -11.60998 -11.45057 -11.33710 -10.73311 -10.60341 -10.40984 -10.39931 -9.65648 -5.04524 -0.64657 -0.64231 0.21649 0.58524 1.12943 1.22008 1.52988 1.84760 1.94386 2.64374 2.84735 3.15160 3.37242 3.54318 3.61175 3.72732 3.75200 3.80883 3.83777 3.88727 4.02909 4.10966 4.14940 4.19293 4.35589 4.38898 4.46566 4.51402 4.59818 4.65913 4.76169 4.77172 4.80471 4.86199 4.87419 4.98452 5.03089 5.06829 5.18982 5.35840 5.81699 6.28713 6.37511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.058 3.942 4 H 0.087 0.913 5 C -0.131 4.131 6 C -0.110 4.110 7 H 0.097 0.903 8 C -0.113 4.113 9 C 0.111 3.889 10 N -1.119 6.119 11 S 2.716 3.284 12 O -0.950 6.950 13 O -0.928 6.928 14 C -0.768 4.768 15 C 0.055 3.945 16 C -0.108 4.108 17 O -0.518 6.518 18 Si 0.707 3.293 19 C -0.158 4.158 20 C -0.165 4.165 21 S 0.205 5.795 22 C -0.155 4.155 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.422 0.578 33 H 0.086 0.914 34 H 0.386 0.614 35 H -0.252 1.252 36 H -0.248 1.248 37 H 0.156 0.844 38 H 0.180 0.820 39 H 0.071 0.929 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 3.382 4.481 5.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.296 6.296 3 C 0.000 4.000 4 H 0.105 0.895 5 C -0.168 4.168 6 C -0.129 4.129 7 H 0.115 0.885 8 C -0.152 4.152 9 C -0.014 4.014 10 N -0.881 5.881 11 S 2.800 3.200 12 O -0.940 6.940 13 O -0.917 6.917 14 C -0.968 4.968 15 C 0.038 3.962 16 C -0.219 4.219 17 O -0.326 6.326 18 Si 0.606 3.394 19 C -0.188 4.188 20 C -0.302 4.302 21 S 0.471 5.529 22 C -0.192 4.192 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.258 0.742 33 H 0.104 0.896 34 H 0.235 0.765 35 H -0.177 1.177 36 H -0.172 1.172 37 H 0.174 0.826 38 H 0.197 0.803 39 H 0.090 0.910 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.724 3.157 4.944 5.911 hybrid contribution -0.189 0.545 -1.416 1.529 sum -0.914 3.702 3.529 5.195 Atomic orbital electron populations 1.22807 0.81028 1.02947 0.99968 1.87953 1.19776 1.27329 1.94575 1.23754 0.93934 0.85371 0.96894 0.89525 1.23269 0.95404 1.00308 0.97850 1.22284 0.93817 0.99621 0.97205 0.88508 1.21723 0.96210 0.99220 0.98024 1.21499 0.81389 0.99237 0.99325 1.55577 1.21978 1.62784 1.47775 1.01555 0.73831 0.72070 0.72589 1.93626 1.34729 1.80966 1.84703 1.93655 1.60540 1.83203 1.54317 1.35707 1.23899 1.30037 1.07108 1.17848 0.93090 0.91887 0.93398 1.25012 0.94084 1.11281 0.91525 1.86698 1.30607 1.89101 1.26232 0.94677 0.84800 0.76685 0.83275 1.20272 1.04841 0.97034 0.96647 1.26129 1.02812 1.02374 0.98852 1.84004 1.61658 0.96794 1.10458 1.23672 0.97339 1.01116 0.97095 0.89588 0.93982 0.93959 0.88868 0.90784 0.90300 0.90485 0.91739 0.89548 0.74222 0.89580 0.76550 1.17669 1.17250 0.82637 0.80301 0.91003 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 101.05 1.10 1.09 16 2 O -0.38 -0.77 10.72 -35.23 -0.38 -1.15 16 3 C 0.06 -0.01 4.31 -25.83 -0.11 -0.12 16 4 H 0.09 -0.12 7.87 -51.93 -0.41 -0.53 16 5 C -0.13 0.17 7.48 -25.92 -0.19 -0.03 16 6 C -0.11 0.24 3.64 -89.81 -0.33 -0.09 16 7 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 8 C -0.11 0.27 5.18 -26.73 -0.14 0.13 16 9 C 0.11 -0.15 5.96 -4.04 -0.02 -0.17 16 10 N -1.12 0.48 5.81 -10.61 -0.06 0.42 16 11 S 2.72 8.57 5.07 -107.50 -0.55 8.02 16 12 O -0.95 -4.99 17.48 -57.17 -1.00 -5.99 16 13 O -0.93 -5.70 16.94 -59.41 -1.01 -6.71 16 14 C -0.77 -1.81 6.45 29.04 0.19 -1.62 16 15 C 0.05 0.13 5.16 -106.25 -0.55 -0.42 16 16 C -0.11 -0.21 2.32 36.00 0.08 -0.13 16 17 O -0.52 -1.63 12.30 -35.88 -0.44 -2.07 16 18 Si 0.71 -0.41 30.42 -169.99 -5.17 -5.58 16 19 C -0.16 -0.05 8.74 -41.21 -0.36 -0.41 16 20 C -0.16 0.18 11.23 29.03 0.33 0.50 16 21 S 0.20 -0.12 21.05 -107.50 -2.26 -2.38 16 22 C -0.15 0.11 7.48 -25.83 -0.19 -0.08 16 23 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 24 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.04 -0.04 8.14 -51.92 -0.42 -0.46 16 26 H 0.09 -0.06 8.10 -51.93 -0.42 -0.48 16 27 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 28 H 0.08 -0.16 7.87 -51.93 -0.41 -0.57 16 29 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 30 H 0.06 -0.17 6.22 -51.93 -0.32 -0.49 16 31 H 0.09 -0.03 7.76 -51.93 -0.40 -0.44 16 32 H 0.42 -1.06 8.65 -34.47 -0.30 -1.36 16 33 H 0.09 0.12 7.23 -51.93 -0.38 -0.25 16 34 H 0.39 -0.42 8.74 45.56 0.40 -0.02 16 35 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 36 H -0.25 -0.32 6.86 56.52 0.39 0.07 16 37 H 0.16 -0.23 5.57 -52.48 -0.29 -0.52 16 38 H 0.18 -0.74 8.06 -52.48 -0.42 -1.16 16 39 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 40 H 0.09 0.02 7.92 -51.93 -0.41 -0.39 16 LS Contribution 353.54 15.07 5.33 5.33 Total: 0.00 -10.12 353.54 -11.28 -21.40 By element: Atomic # 1 Polarization: -4.42 SS G_CDS: -5.54 Total: -9.96 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.20 Total: -1.35 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -0.06 Total: 0.42 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -2.82 Total: -15.91 kcal Atomic # 14 Polarization: -0.41 SS G_CDS: -5.17 Total: -5.58 kcal Atomic # 16 Polarization: 8.45 SS G_CDS: -2.81 Total: 5.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -10.12 -11.28 -21.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16488028_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.734 kcal (2) G-P(sol) polarization free energy of solvation -10.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds